Wall clock time and date at job start Tue Mar 31 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00014 * 2 1 4 4 C 1.53000 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46995 * 64.99765 * 4 3 2 6 6 C 1.46494 * 120.00229 * 274.74396 * 5 4 3 7 7 C 1.50703 * 109.46868 * 262.75060 * 6 5 4 8 8 H 1.08006 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00170 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99963 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00429 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46728 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.46936 * 120.00119 * 11 9 7 14 14 H 1.48494 * 109.47541 * 240.00386 * 11 9 7 15 15 C 1.34781 * 119.99878 * 94.74017 * 5 4 3 16 16 O 1.21536 * 119.99606 * 3.25475 * 15 5 4 17 17 C 1.47995 * 120.00298 * 183.25663 * 15 5 4 18 18 N 1.32809 * 119.74742 * 353.98959 * 17 15 5 19 19 C 1.31435 * 121.66618 * 179.97438 * 18 17 15 20 20 C 1.38684 * 120.97637 * 359.97438 * 19 18 17 21 21 C 1.38443 * 119.39846 * 0.25750 * 20 19 18 22 22 C 1.38975 * 118.46674 * 359.50472 * 21 20 19 23 23 F 1.35100 * 120.50205 * 180.24720 * 22 21 20 24 24 H 1.09006 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47080 * 299.99579 * 1 2 3 26 26 H 1.09004 * 109.47400 * 59.99754 * 1 2 3 27 27 H 1.08996 * 109.46843 * 59.99853 * 3 2 1 28 28 H 1.09001 * 109.47259 * 300.00198 * 3 2 1 29 29 H 1.08999 * 109.46946 * 305.00017 * 4 3 2 30 30 H 1.08999 * 109.47080 * 184.99806 * 4 3 2 31 31 H 1.08995 * 109.47468 * 22.75453 * 6 5 4 32 32 H 1.09003 * 109.47114 * 142.75687 * 6 5 4 33 33 H 0.96999 * 120.00200 * 179.97438 * 10 9 7 34 34 H 1.08000 * 119.51538 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.29803 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.77095 * 179.72351 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0057 -0.8950 -1.3763 7 6 5.4038 -1.3926 -1.1138 8 1 6.1911 -0.6917 -0.8781 9 6 5.6777 -2.7425 -1.1735 10 7 4.7190 -3.5960 -1.4600 11 14 7.4105 -3.3594 -0.8475 12 1 8.2983 -2.2069 -0.5493 13 1 7.3960 -4.2856 0.3131 14 1 7.9147 -4.0760 -2.0464 15 6 4.3529 1.3365 -2.2911 16 8 4.3844 2.5454 -2.1694 17 6 4.7286 0.7124 -3.5793 18 7 4.8082 -0.6101 -3.6724 19 6 5.1379 -1.2039 -4.7976 20 6 5.4166 -0.4668 -5.9388 21 6 5.3511 0.9151 -5.8880 22 6 4.9951 1.5178 -4.6873 23 9 4.9137 2.8630 -4.5929 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1766 0.0889 31 1 3.3213 -1.3352 -0.6512 32 1 3.7015 -1.1808 -2.3832 33 1 4.9117 -4.5457 -1.5024 34 1 5.1917 -2.2820 -4.8343 35 1 5.6868 -0.9661 -6.8575 36 1 5.5681 1.5111 -6.7622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597136523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:32 Heat of formation + Delta-G solvation = -80.919428 kcal Electronic energy + Delta-G solvation = -22916.449577 eV Core-core repulsion = 19315.980038 eV Total energy + Delta-G solvation = -3600.469539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.93948 -41.49845 -40.00871 -38.68743 -36.64737 -34.43705 -33.58121 -32.10232 -30.97491 -28.77901 -27.22099 -25.89417 -24.66900 -24.46769 -23.50582 -20.81054 -18.73930 -18.62414 -18.22236 -17.97655 -17.40863 -17.10792 -16.92643 -16.53966 -16.40939 -15.99085 -15.88645 -15.36117 -14.85649 -14.58480 -14.34696 -14.16162 -14.04258 -13.46793 -13.35125 -13.17731 -12.99867 -12.80554 -12.68083 -12.53007 -12.09731 -11.93644 -11.56134 -11.15050 -10.85365 -10.60843 -10.46870 -10.01415 -9.70979 -9.32042 -7.98205 -6.03777 -0.39680 0.19424 1.40607 1.44563 1.53452 1.78045 2.18599 2.51351 2.83466 2.93667 3.05891 3.33565 3.35570 3.72611 3.78103 4.00933 4.11427 4.17601 4.35540 4.45036 4.52800 4.55455 4.59737 4.75715 4.84411 4.85823 4.88368 5.02734 5.19046 5.55662 5.66915 5.98320 6.03511 6.28255 6.35543 6.57161 6.88324 7.05082 7.26652 7.58550 9.09078 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.009867 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.790392 B = 2836.923720 C = 4703.016032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.058 3.942 4 C 0.108 3.892 5 N -0.572 5.572 6 C 0.251 3.749 7 C -0.503 4.503 8 H 0.028 0.972 9 C 0.034 3.966 10 N -0.912 5.912 11 Si 0.937 3.063 12 H -0.285 1.285 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.551 3.449 16 O -0.586 6.586 17 C 0.014 3.986 18 N -0.393 5.393 19 C 0.064 3.936 20 C -0.096 4.096 21 C -0.116 4.116 22 C 0.080 3.920 23 F -0.126 7.126 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.261 0.739 34 H 0.171 0.829 35 H 0.197 0.803 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 5.228 -7.474 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.019 4.019 4 C -0.015 4.015 5 N -0.300 5.300 6 C 0.131 3.869 7 C -0.542 4.542 8 H 0.046 0.954 9 C -0.165 4.165 10 N -0.552 5.552 11 Si 0.764 3.236 12 H -0.210 1.210 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.339 3.661 16 O -0.469 6.469 17 C -0.124 4.124 18 N -0.104 5.104 19 C -0.096 4.096 20 C -0.116 4.116 21 C -0.142 4.142 22 C 0.057 3.943 23 F -0.105 7.105 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.189 0.811 35 H 0.214 0.786 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.617 5.036 -6.612 9.065 hybrid contribution 0.878 0.388 -0.082 0.963 sum -2.740 5.424 -6.694 9.041 Atomic orbital electron populations 1.22879 0.79955 1.03378 1.00619 1.88036 1.21222 1.28079 1.95468 1.22902 0.93134 0.84917 1.00987 1.21640 0.93393 0.99687 0.86737 1.48209 1.60269 1.09806 1.11680 1.19738 0.95530 0.72241 0.99367 1.21335 0.95008 0.91848 1.46026 0.95363 1.25258 0.99226 0.96570 0.95443 1.70036 1.32836 1.02346 1.49991 0.85852 0.81799 0.77880 0.78046 1.21004 1.20883 1.19829 1.18197 0.77874 0.85713 0.84342 1.90675 1.57894 1.14269 1.84099 1.21367 1.05715 0.91129 0.94195 1.68704 1.07510 1.07314 1.26829 1.23558 0.95638 1.02333 0.88059 1.22762 0.95076 0.92792 1.00924 1.22005 0.99442 0.96466 0.96245 1.19057 1.01580 0.77761 0.95872 1.91524 1.93316 1.28862 1.96785 0.89275 0.92184 0.94091 0.89468 0.94327 0.89985 0.88569 0.96816 0.90956 0.92953 0.81148 0.78635 0.79264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -15.28 9.22 -148.98 -1.37 -16.66 16 3 C 0.06 1.97 6.28 71.98 0.45 2.42 16 4 C 0.11 4.31 5.90 86.38 0.51 4.82 16 5 N -0.57 -27.00 2.46 -829.41 -2.04 -29.05 16 6 C 0.25 13.11 4.51 85.64 0.39 13.49 16 7 C -0.50 -27.77 7.99 25.60 0.20 -27.56 16 8 H 0.03 1.64 7.81 -2.91 -0.02 1.62 16 9 C 0.03 1.86 5.46 84.65 0.46 2.32 16 10 N -0.91 -50.74 13.29 21.45 0.28 -50.45 16 11 Si 0.94 43.30 29.54 68.60 2.03 45.33 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 C 0.55 26.25 7.58 86.83 0.66 26.91 16 16 O -0.59 -28.92 14.83 -3.83 -0.06 -28.98 16 17 C 0.01 0.60 6.63 41.90 0.28 0.88 16 18 N -0.39 -16.86 4.99 -184.79 -0.92 -17.78 16 19 C 0.06 2.10 11.18 84.86 0.95 3.04 16 20 C -0.10 -2.14 10.11 22.43 0.23 -1.91 16 21 C -0.12 -2.81 10.16 22.50 0.23 -2.59 16 22 C 0.08 2.87 7.31 22.76 0.17 3.04 16 23 F -0.13 -4.82 15.57 44.97 0.70 -4.12 16 24 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 3.29 8.11 -2.39 -0.02 3.27 16 30 H 0.10 3.65 7.24 -2.39 -0.02 3.63 16 31 H 0.01 0.79 6.85 -2.39 -0.02 0.77 16 32 H 0.07 3.94 5.21 -3.87 -0.02 3.92 16 33 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 34 H 0.17 5.20 8.06 -2.91 -0.02 5.18 16 35 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.19 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -71.89 313.77 5.47 -66.42 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.09 Total: 8.44 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 5.77 Total: 26.86 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -2.68 Total: -97.28 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -1.43 Total: -45.64 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.70 Total: -4.12 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -71.89 5.47 -66.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.504 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds