Wall clock time and date at job start Tue Mar 31 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 C 1.52997 * 109.46936 * 239.99401 * 2 1 3 5 5 C 1.50702 * 109.46845 * 60.00397 * 4 2 1 6 6 H 1.08000 * 120.00231 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99963 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99763 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99977 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46820 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47248 * 120.00040 * 9 7 5 12 12 H 1.48502 * 109.46550 * 239.99758 * 9 7 5 13 13 C 1.53003 * 109.46726 * 119.99720 * 2 1 3 14 14 N 1.46897 * 109.47374 * 299.99703 * 13 2 1 15 15 C 1.46904 * 110.99948 * 180.02562 * 14 13 2 16 16 C 1.50694 * 109.47084 * 179.97438 * 15 14 13 17 17 C 1.38653 * 120.79277 * 104.99748 * 16 15 14 18 18 C 1.38195 * 119.17975 * 180.02562 * 17 16 15 19 19 N 1.31883 * 120.79006 * 0.02562 * 18 17 16 20 20 C 1.31842 * 121.74130 * 359.97438 * 19 18 17 21 21 C 1.38349 * 120.74297 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 120.43161 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.47112 * 300.00164 * 1 2 3 24 24 H 1.09000 * 109.47230 * 59.99983 * 1 2 3 25 25 H 1.08994 * 109.47484 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47245 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46954 * 300.00185 * 3 2 1 28 28 H 1.09004 * 109.47134 * 59.99849 * 3 2 1 29 29 H 1.08998 * 109.47259 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.47761 * 300.00413 * 4 2 1 31 31 H 0.97006 * 119.99675 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46928 * 179.97438 * 13 2 1 33 33 H 1.09000 * 109.47394 * 60.00439 * 13 2 1 34 34 H 1.00899 * 111.00046 * 56.05160 * 14 13 2 35 35 H 1.09003 * 109.46975 * 60.00034 * 15 14 13 36 36 H 1.09005 * 109.47119 * 300.00297 * 15 14 13 37 37 H 1.08002 * 120.41349 * 0.05045 * 17 16 15 38 38 H 1.07990 * 119.60288 * 179.72771 * 18 17 16 39 39 H 1.08004 * 119.62972 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5376 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8711 -0.4818 -3.7320 8 7 2.6280 -1.5506 -3.8525 9 14 1.2491 0.3992 -5.2572 10 1 0.4236 1.5655 -4.8530 11 1 2.4044 0.8659 -6.0651 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0218 -0.6945 3.6704 16 6 1.5012 0.0429 4.8771 17 6 0.4592 -0.4754 5.6307 18 6 0.0077 0.2290 6.7306 19 7 0.5553 1.3810 7.0658 20 6 1.5475 1.9049 6.3735 21 6 2.0531 1.2566 5.2607 22 17 3.3593 1.9541 4.3546 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1299 -0.7210 -1.2494 30 1 1.6766 -1.7490 -1.2492 31 1 2.8629 -1.8816 -4.7336 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2494 34 1 0.5438 0.0414 2.4402 35 1 3.1117 -0.6939 3.6869 36 1 1.6586 -1.7221 3.6874 37 1 0.0062 -1.4182 5.3618 38 1 -0.8065 -0.1662 7.3198 39 1 1.9704 2.8507 6.6784 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598973734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:29 Heat of formation + Delta-G solvation = 10.107876 kcal Electronic energy + Delta-G solvation = -19688.190136 eV Core-core repulsion = 16655.837307 eV Total energy + Delta-G solvation = -3032.352829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49791 -37.74407 -36.62757 -35.10801 -32.70958 -31.66620 -31.21621 -27.33438 -26.52909 -26.32074 -24.53669 -23.76229 -22.45131 -21.80109 -18.07106 -17.05930 -16.97969 -16.26706 -16.12371 -15.19740 -15.01348 -14.50597 -14.24782 -13.99296 -13.92391 -13.20719 -12.74281 -12.64754 -12.51561 -12.05199 -12.00207 -11.81298 -11.69625 -11.17878 -10.99359 -10.88743 -10.75683 -10.50698 -10.30003 -10.14017 -9.89253 -9.79149 -9.69607 -9.12862 -9.01647 -8.83238 -8.32586 -8.18359 -5.97018 -3.96925 0.70450 0.84730 2.01063 3.32014 3.39515 3.40105 3.43612 4.15599 4.22828 4.37127 4.48235 4.63030 4.73386 5.01003 5.21598 5.32214 5.39054 5.46132 5.63831 5.67471 5.73193 5.91713 5.96683 6.20667 6.23567 6.30929 6.48781 6.66520 6.76995 6.83040 7.14493 7.19865 7.26138 7.33917 7.56894 7.57304 7.69711 7.84421 8.03391 8.47809 9.08685 9.66025 11.14687 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.003471 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.440032 B = 8065.079411 C = 8317.632237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.072 3.928 14 N -0.674 5.674 15 C 0.092 3.908 16 C -0.029 4.029 17 C -0.157 4.157 18 C 0.096 3.904 19 N -0.474 5.474 20 C 0.106 3.894 21 C -0.067 4.067 22 Cl -0.035 7.035 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.340 0.660 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 2.718 20.483 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.057 4.057 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.056 4.056 14 N -0.306 5.306 15 C -0.037 4.037 16 C -0.038 4.038 17 C -0.178 4.178 18 C -0.060 4.060 19 N -0.183 5.183 20 C -0.051 4.051 21 C -0.097 4.097 22 Cl -0.006 7.006 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.159 0.841 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.159 0.841 38 H 0.178 0.822 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.218 3.571 20.989 21.406 hybrid contribution -0.412 -0.904 -1.781 2.040 sum -2.629 2.666 19.208 19.569 Atomic orbital electron populations 1.21771 0.96114 1.00309 1.00433 1.20621 0.94678 0.96192 0.94245 1.21589 0.99757 0.95721 1.00190 1.19125 0.96132 0.94943 0.90172 1.21276 1.30677 1.11878 0.90588 0.92237 1.25017 0.95415 0.95117 0.99067 1.69977 1.37318 1.23292 1.23176 0.86613 0.78622 0.79741 0.83503 1.19763 1.21146 1.21202 1.22133 0.99952 0.94621 0.88930 1.60566 1.16402 1.53401 1.00268 1.20923 1.01233 0.94338 0.87205 1.20312 0.94096 0.93203 0.96175 1.22147 0.97117 1.02010 0.96500 1.22815 0.98153 0.90477 0.94593 1.67790 1.08790 1.12007 1.29739 1.22802 0.92557 0.99486 0.90287 1.22017 0.95488 0.95957 0.96233 1.98412 1.45574 1.83092 1.73533 0.94888 0.91681 0.94119 0.94202 0.92770 0.93811 0.96663 0.96939 0.93230 0.91350 0.95712 0.84137 0.89304 0.93943 0.84097 0.82211 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 2 C -0.06 -1.11 0.60 -154.51 -0.09 -1.20 16 3 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.73 7.65 -34.44 -0.26 -14.00 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.07 1.18 4.65 -3.82 -0.02 1.16 16 14 N -0.67 -9.16 5.69 -115.05 -0.65 -9.81 16 15 C 0.09 1.05 5.22 -4.98 -0.03 1.02 16 16 C -0.03 -0.31 5.43 -104.29 -0.57 -0.87 16 17 C -0.16 -1.40 9.77 -39.44 -0.39 -1.78 16 18 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 19 N -0.47 -5.12 10.36 -13.22 -0.14 -5.26 16 20 C 0.11 1.11 10.99 -17.51 -0.19 0.92 16 21 C -0.07 -0.75 6.34 -39.36 -0.25 -1.00 16 22 Cl -0.04 -0.42 27.81 -51.86 -1.44 -1.86 16 23 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 24 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 28 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.52 6.76 -39.29 -0.27 4.25 16 35 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16 36 H 0.04 0.44 8.01 -51.93 -0.42 0.03 16 37 H 0.14 0.94 8.05 -52.49 -0.42 0.52 16 38 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -29.81 332.16 -8.86 -38.67 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.74 Total: -0.39 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.61 Total: -16.89 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.05 Total: -41.06 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.44 Total: -1.86 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.81 -8.86 -38.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598973734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.782 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds