Wall clock time and date at job start Tue Mar 31 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 C 1.52997 * 109.46936 * 239.99401 * 2 1 3 5 5 C 1.50702 * 109.46845 * 60.00397 * 4 2 1 6 6 H 1.08000 * 120.00231 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99963 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99763 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99977 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46820 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47248 * 120.00040 * 9 7 5 12 12 H 1.48502 * 109.46550 * 239.99758 * 9 7 5 13 13 C 1.53003 * 109.46726 * 119.99720 * 2 1 3 14 14 N 1.46897 * 109.47374 * 299.99703 * 13 2 1 15 15 C 1.46904 * 110.99948 * 180.02562 * 14 13 2 16 16 C 1.50694 * 109.47084 * 179.97438 * 15 14 13 17 17 C 1.38653 * 120.79277 * 104.99748 * 16 15 14 18 18 C 1.38195 * 119.17975 * 180.02562 * 17 16 15 19 19 N 1.31883 * 120.79006 * 0.02562 * 18 17 16 20 20 C 1.31842 * 121.74130 * 359.97438 * 19 18 17 21 21 C 1.38349 * 120.74297 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 120.43161 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.47112 * 300.00164 * 1 2 3 24 24 H 1.09000 * 109.47230 * 59.99983 * 1 2 3 25 25 H 1.08994 * 109.47484 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47245 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46954 * 300.00185 * 3 2 1 28 28 H 1.09004 * 109.47134 * 59.99849 * 3 2 1 29 29 H 1.08998 * 109.47259 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.47761 * 300.00413 * 4 2 1 31 31 H 0.97006 * 119.99675 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46928 * 179.97438 * 13 2 1 33 33 H 1.09000 * 109.47394 * 60.00439 * 13 2 1 34 34 H 1.00899 * 111.00046 * 56.05160 * 14 13 2 35 35 H 1.09003 * 109.46975 * 60.00034 * 15 14 13 36 36 H 1.09005 * 109.47119 * 300.00297 * 15 14 13 37 37 H 1.08002 * 120.41349 * 0.05045 * 17 16 15 38 38 H 1.07990 * 119.60288 * 179.72771 * 18 17 16 39 39 H 1.08004 * 119.62972 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5376 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8711 -0.4818 -3.7320 8 7 2.6280 -1.5506 -3.8525 9 14 1.2491 0.3992 -5.2572 10 1 0.4236 1.5655 -4.8530 11 1 2.4044 0.8659 -6.0651 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0218 -0.6945 3.6704 16 6 1.5012 0.0429 4.8771 17 6 0.4592 -0.4754 5.6307 18 6 0.0077 0.2290 6.7306 19 7 0.5553 1.3810 7.0658 20 6 1.5475 1.9049 6.3735 21 6 2.0531 1.2566 5.2607 22 17 3.3593 1.9541 4.3546 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1299 -0.7210 -1.2494 30 1 1.6766 -1.7490 -1.2492 31 1 2.8629 -1.8816 -4.7336 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2494 34 1 0.5438 0.0414 2.4402 35 1 3.1117 -0.6939 3.6869 36 1 1.6586 -1.7221 3.6874 37 1 0.0062 -1.4182 5.3618 38 1 -0.8065 -0.1662 7.3198 39 1 1.9704 2.8507 6.6784 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598973734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:29 Heat of formation + Delta-G solvation = -7.452383 kcal Electronic energy + Delta-G solvation = -19688.951606 eV Core-core repulsion = 16655.837307 eV Total energy + Delta-G solvation = -3033.114299 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25198 -39.17783 -37.48537 -36.32915 -34.49830 -32.90969 -31.96213 -29.12069 -27.88514 -27.79886 -26.01655 -24.49044 -24.05923 -22.75885 -19.60316 -18.32679 -17.91845 -17.79462 -16.92958 -16.62793 -16.24515 -15.90977 -15.41222 -15.03007 -14.92631 -14.65859 -14.25683 -13.98062 -13.82756 -13.54615 -13.21266 -12.89138 -12.80110 -12.72345 -12.67084 -12.37229 -12.23414 -12.14785 -12.03835 -11.87289 -11.36872 -10.90071 -10.81032 -10.58816 -10.51808 -10.50399 -9.88240 -9.29987 -8.13794 -6.20177 -0.02644 0.08402 1.19085 1.39734 1.41251 1.53010 2.43820 2.65088 3.20470 3.27800 3.50280 3.57773 3.79279 3.97468 4.14331 4.22991 4.29617 4.40813 4.46935 4.64201 4.67564 4.79400 4.81871 4.87614 4.97837 5.09246 5.15294 5.22533 5.23535 5.53355 5.54993 5.55826 5.59820 5.66133 5.88606 5.93981 6.02364 6.37843 6.48567 6.85158 6.95327 7.47120 8.98659 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.003471 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.440032 B = 8065.079411 C = 8317.632237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.053 4.053 3 C -0.105 4.105 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.954 3.046 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.086 3.914 14 N -0.673 5.673 15 C 0.096 3.904 16 C -0.039 4.039 17 C -0.150 4.150 18 C 0.097 3.903 19 N -0.492 5.492 20 C 0.100 3.900 21 C -0.079 4.079 22 Cl -0.050 7.050 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.035 0.965 28 H 0.065 0.935 29 H -0.016 1.016 30 H -0.014 1.014 31 H 0.259 0.741 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.167 0.833 38 H 0.191 0.809 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 3.162 21.812 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.054 4.054 3 C -0.162 4.162 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.043 4.043 14 N -0.305 5.305 15 C -0.033 4.033 16 C -0.048 4.048 17 C -0.170 4.170 18 C -0.060 4.060 19 N -0.202 5.202 20 C -0.057 4.057 21 C -0.108 4.108 22 Cl -0.021 7.021 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.002 0.998 30 H 0.005 0.995 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.185 0.815 38 H 0.208 0.792 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.906 4.030 22.337 23.031 hybrid contribution 0.097 -1.077 -2.105 2.366 sum -3.810 2.953 20.232 20.799 Atomic orbital electron populations 1.21673 0.94659 1.00511 1.01017 1.20473 0.95775 0.95892 0.93235 1.21477 0.98981 0.95480 1.00264 1.19002 0.94046 0.94063 0.92616 1.21656 1.30067 1.11819 0.91509 0.91735 1.25894 0.95758 0.95909 1.02495 1.70110 1.38871 1.24987 1.23925 0.85557 0.78117 0.78841 0.79521 1.18556 1.20947 1.20762 1.21790 0.99188 0.94367 0.88913 1.60436 1.16687 1.53382 1.00003 1.20881 1.00884 0.95105 0.86415 1.20318 0.94994 0.93209 0.96302 1.22419 0.96060 1.02705 0.95809 1.23361 0.98308 0.89699 0.94612 1.67846 1.09124 1.13045 1.30160 1.23000 0.92593 1.00001 0.90080 1.22113 0.95572 0.96480 0.96679 1.98406 1.46367 1.83394 1.73901 0.91613 0.93694 0.94119 0.95298 0.94574 0.91618 0.99803 0.99519 0.93199 0.92464 0.95688 0.83557 0.90092 0.92333 0.81541 0.79216 0.80864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 7.89 71.98 0.57 -3.66 16 2 C -0.05 -2.06 0.60 -52.18 -0.03 -2.09 16 3 C -0.10 -3.98 8.06 71.98 0.58 -3.39 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.20 7.65 25.60 0.20 -28.00 16 6 H 0.06 3.43 5.68 -2.91 -0.02 3.41 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.94 -57.08 13.29 21.45 0.28 -56.80 16 9 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.09 2.77 4.65 86.30 0.40 3.17 16 14 N -0.67 -16.97 5.69 -517.92 -2.94 -19.91 16 15 C 0.10 1.99 5.22 85.55 0.45 2.44 16 16 C -0.04 -0.75 5.43 -19.65 -0.11 -0.85 16 17 C -0.15 -2.16 9.77 22.36 0.22 -1.94 16 18 C 0.10 1.41 11.18 84.67 0.95 2.36 16 19 N -0.49 -9.53 10.36 -195.75 -2.03 -11.56 16 20 C 0.10 1.94 10.99 84.72 0.93 2.87 16 21 C -0.08 -1.64 6.34 22.41 0.14 -1.50 16 22 Cl -0.05 -1.13 27.81 -2.72 -0.08 -1.21 16 23 H 0.07 1.85 6.57 -2.39 -0.02 1.84 16 24 H 0.04 1.74 6.62 -2.39 -0.02 1.72 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 1.47 6.62 -2.39 -0.02 1.46 16 28 H 0.06 2.19 7.60 -2.39 -0.02 2.17 16 29 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 32 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.34 8.15 6.76 -89.69 -0.61 7.54 16 35 H 0.08 1.83 7.68 -2.39 -0.02 1.82 16 36 H 0.06 1.06 8.01 -2.38 -0.02 1.04 16 37 H 0.17 1.51 8.05 -2.91 -0.02 1.49 16 38 H 0.19 1.50 8.06 -2.92 -0.02 1.48 16 39 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -64.86 332.16 2.57 -62.29 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.44 Total: 8.91 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.87 Total: -28.19 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -4.69 Total: -88.27 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -64.86 2.57 -62.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598973734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.836 kcal (2) G-P(sol) polarization free energy of solvation -64.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds