Wall clock time and date at job start Tue Mar 31 2020 05:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35975 * 117.00317 * 2 1 4 4 C 1.38723 * 119.97312 * 0.02562 * 3 2 1 5 5 C 1.38128 * 120.04868 * 179.74127 * 4 3 2 6 6 C 1.38774 * 120.01042 * 0.51250 * 5 4 3 7 7 N 1.40287 * 120.02036 * 179.74196 * 6 5 4 8 8 C 1.34777 * 120.00136 * 335.21387 * 7 6 5 9 9 O 1.21595 * 119.99908 * 354.37078 * 8 7 6 10 10 N 1.34769 * 119.99867 * 174.36395 * 8 7 6 11 11 C 1.46499 * 120.00007 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47094 * 325.00199 * 11 10 8 13 13 C 1.53002 * 109.47121 * 85.00099 * 11 10 8 14 14 C 1.50703 * 109.47466 * 205.00290 * 11 10 8 15 15 H 1.08001 * 119.99574 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00469 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99364 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 119.99997 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46769 * 269.99172 * 18 16 14 20 20 H 1.48497 * 109.47523 * 29.99338 * 18 16 14 21 21 H 1.48503 * 109.46930 * 150.00085 * 18 16 14 22 22 C 1.39015 * 119.95619 * 359.46842 * 6 5 4 23 23 F 1.35093 * 120.02854 * 180.30102 * 22 6 5 24 24 C 1.38282 * 119.94401 * 0.27314 * 22 6 5 25 25 H 1.09000 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47291 * 299.99830 * 1 2 3 27 27 H 1.08999 * 109.47325 * 59.99819 * 1 2 3 28 28 H 1.07994 * 119.97735 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.99659 * 180.25111 * 5 4 3 30 30 H 0.97004 * 119.99691 * 155.22196 * 7 6 5 31 31 H 0.97003 * 120.00415 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.47422 * 299.99757 * 13 11 10 33 33 H 1.08997 * 109.47054 * 60.00075 * 13 11 10 34 34 H 1.09009 * 109.47005 * 180.02562 * 13 11 10 35 35 H 0.97003 * 119.99543 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.00448 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3746 0.0005 5 6 1.9158 3.6061 0.0059 6 6 3.3015 3.6808 0.0001 7 7 3.9370 4.9315 0.0001 8 6 3.2955 6.0134 -0.4840 9 8 2.2081 5.8889 -1.0138 10 7 3.8591 7.2332 -0.3809 11 6 3.1616 8.4093 -0.9066 12 1 2.6135 8.1340 -1.8076 13 6 2.1825 8.9342 0.1455 14 6 4.1660 9.4828 -1.2380 15 1 5.2188 9.3067 -1.0730 16 6 3.7411 10.6901 -1.7507 17 7 2.4591 10.9046 -1.9511 18 14 4.9863 12.0203 -2.1621 19 1 5.1997 12.8834 -0.9726 20 1 6.2727 11.3902 -2.5537 21 1 4.4763 12.8450 -3.2869 22 6 4.0595 2.5155 0.0000 23 9 5.4086 2.5865 0.0004 24 6 3.4314 1.2835 0.0000 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2119 2.3172 0.0014 29 1 1.3264 4.5112 0.0105 30 1 4.8382 5.0175 0.3485 31 1 4.7267 7.3325 0.0415 32 1 1.4559 8.1579 0.3851 33 1 2.7306 9.2095 1.0465 34 1 1.6632 9.8090 -0.2459 35 1 2.1601 11.7541 -2.3115 36 1 4.0193 0.3776 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603064154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:56 Heat of formation + Delta-G solvation = -81.364849 kcal Electronic energy + Delta-G solvation = -21585.325444 eV Core-core repulsion = 17984.836590 eV Total energy + Delta-G solvation = -3600.488854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.93051 -40.43265 -39.51262 -37.28359 -35.01888 -34.06498 -32.43621 -30.84634 -29.52945 -28.29001 -27.03622 -25.28679 -23.46622 -22.32983 -21.15565 -19.92666 -18.72137 -18.22927 -17.56517 -16.55092 -16.12942 -16.05864 -15.78189 -15.46570 -15.10210 -14.90411 -14.66419 -14.21573 -13.81391 -13.36641 -12.92800 -12.60976 -12.56073 -12.42315 -12.37436 -11.81938 -11.50715 -11.17191 -11.11973 -10.97235 -10.76618 -10.35980 -10.26423 -9.90177 -9.42534 -9.08847 -8.88456 -8.60054 -8.09165 -7.54295 -6.16041 -4.25222 1.08798 1.29841 2.97083 3.10034 3.22693 3.29974 3.32736 3.43887 3.89513 4.27109 4.29893 4.68607 4.82062 4.90852 4.94888 4.97691 5.16883 5.21518 5.30239 5.36178 5.63142 5.95393 6.19556 6.33330 6.42074 6.74422 6.88360 6.92727 7.04924 7.16534 7.24780 7.39126 7.58453 7.77549 7.93799 8.10863 8.66822 8.78415 9.14420 9.42742 10.90076 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.033351 B = 0.003464 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.364083 B = 8080.354956 C = 8716.070098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.191 4.191 5 C -0.068 4.068 6 C 0.124 3.876 7 N -0.689 5.689 8 C 0.695 3.305 9 O -0.582 6.582 10 N -0.716 5.716 11 C 0.280 3.720 12 H 0.051 0.949 13 C -0.148 4.148 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.274 1.274 21 H -0.285 1.285 22 C 0.092 3.908 23 F -0.135 7.135 24 C -0.167 4.167 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.136 0.864 29 H 0.165 0.835 30 H 0.406 0.594 31 H 0.388 0.612 32 H 0.015 0.985 33 H 0.026 0.974 34 H 0.091 0.909 35 H 0.265 0.735 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -17.734 6.084 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.076 3.924 4 C -0.210 4.210 5 C -0.088 4.088 6 C 0.026 3.974 7 N -0.337 5.337 8 C 0.395 3.605 9 O -0.460 6.460 10 N -0.366 5.366 11 C 0.178 3.822 12 H 0.068 0.932 13 C -0.207 4.207 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.198 1.198 21 H -0.210 1.210 22 C 0.070 3.930 23 F -0.114 7.114 24 C -0.187 4.187 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.182 0.818 30 H 0.241 0.759 31 H 0.220 0.780 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.778 -17.710 5.504 18.631 hybrid contribution 1.556 0.989 0.121 1.848 sum -0.223 -16.721 5.625 17.643 Atomic orbital electron populations 1.23067 0.78213 1.03830 1.01683 1.86036 1.21453 1.26577 1.89052 1.18523 0.91293 0.84402 0.98176 1.21240 1.00477 0.91447 1.07858 1.21319 0.92284 0.99232 0.95989 1.17507 0.92239 0.83406 1.04274 1.42745 1.19308 1.05745 1.65877 1.16112 0.84437 0.80580 0.79359 1.90823 1.21004 1.84759 1.49411 1.45895 1.23107 1.05653 1.61987 1.18719 0.91070 0.79472 0.92945 0.93156 1.22109 0.98717 1.01427 0.98416 1.21208 0.93145 0.98771 1.44236 0.92027 1.24877 0.95502 0.98256 0.95033 1.69901 1.13562 1.24695 1.43870 0.86420 0.81107 0.81330 0.78084 1.20526 1.19842 1.21031 1.16899 0.76665 0.92403 1.07053 1.91473 1.28600 1.97038 1.94249 1.19912 0.92404 0.96722 1.09630 0.88311 0.92508 0.92406 0.84671 0.81798 0.75943 0.78007 0.96581 0.95447 0.89021 0.92511 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.49 10.50 -19.66 -0.21 -3.70 16 3 C 0.12 1.51 6.69 -39.23 -0.26 1.25 16 4 C -0.19 -2.41 9.03 -39.44 -0.36 -2.77 16 5 C -0.07 -1.04 8.71 -39.42 -0.34 -1.38 16 6 C 0.12 1.91 6.44 -83.50 -0.54 1.38 16 7 N -0.69 -11.01 5.33 -14.13 -0.08 -11.08 16 8 C 0.69 13.92 8.33 -86.92 -0.72 13.20 16 9 O -0.58 -13.51 13.17 5.28 0.07 -13.44 16 10 N -0.72 -14.69 5.07 -59.81 -0.30 -15.00 16 11 C 0.28 7.00 2.56 -69.08 -0.18 6.82 16 12 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 13 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 14 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -24.55 11.32 55.43 0.63 -23.92 16 18 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 C 0.09 1.28 7.30 -39.28 -0.29 0.99 16 23 F -0.13 -1.83 16.81 2.25 0.04 -1.79 16 24 C -0.17 -2.09 9.96 -39.40 -0.39 -2.48 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.14 1.38 6.29 -52.49 -0.33 1.05 16 29 H 0.16 2.86 5.78 -52.48 -0.30 2.56 16 30 H 0.41 5.34 8.47 -40.82 -0.35 4.99 16 31 H 0.39 6.83 8.56 -40.82 -0.35 6.48 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 2.43 6.07 -51.92 -0.32 2.11 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -30.43 311.77 -6.38 -36.81 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.06 Total: 9.68 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -2.14 Total: 2.31 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.25 Total: -50.00 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.14 Total: -17.14 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.43 -6.38 -36.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603064154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.557 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds