Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35974 * 116.99749 * 2 1 4 4 C 1.38718 * 119.98061 * 0.02759 * 3 2 1 5 5 C 1.38129 * 120.05551 * 179.72424 * 4 3 2 6 6 C 1.38777 * 120.00968 * 0.50092 * 5 4 3 7 7 N 1.40282 * 120.02373 * 179.76924 * 6 5 4 8 8 C 1.34770 * 119.99929 * 335.21793 * 7 6 5 9 9 O 1.21592 * 120.00545 * 354.32758 * 8 7 6 10 10 N 1.34780 * 120.00015 * 174.05203 * 8 7 6 11 11 C 1.46504 * 119.99710 * 0.27325 * 10 8 7 12 12 C 1.46499 * 120.00245 * 180.27663 * 10 8 7 13 13 C 1.50696 * 109.47081 * 89.99962 * 12 10 8 14 14 H 1.07996 * 120.00316 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99696 * 180.02562 * 13 12 10 16 16 N 1.31520 * 120.00090 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47336 * 89.99659 * 17 15 13 19 19 H 1.48495 * 109.47253 * 209.99851 * 17 15 13 20 20 H 1.48505 * 109.46754 * 329.99741 * 17 15 13 21 21 C 1.39015 * 119.95025 * 359.49947 * 6 5 4 22 22 F 1.35106 * 120.02354 * 180.27664 * 21 6 5 23 23 C 1.38287 * 119.95003 * 0.24607 * 21 6 5 24 24 H 1.09001 * 109.47140 * 299.99697 * 1 2 3 25 25 H 1.09008 * 109.47338 * 59.99887 * 1 2 3 26 26 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.97322 * 359.96794 * 4 3 2 28 28 H 1.07998 * 119.99920 * 180.24980 * 5 4 3 29 29 H 0.96995 * 119.99755 * 155.21170 * 7 6 5 30 30 H 1.09001 * 109.47018 * 90.00240 * 11 10 8 31 31 H 1.09002 * 109.47036 * 210.00229 * 11 10 8 32 32 H 1.08998 * 109.47319 * 329.99917 * 11 10 8 33 33 H 1.09007 * 109.46800 * 209.99855 * 12 10 8 34 34 H 1.08995 * 109.47062 * 329.99303 * 12 10 8 35 35 H 0.96999 * 120.00190 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.00401 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2903 2.3747 0.0006 5 6 1.9157 3.6062 0.0063 6 6 3.3014 3.6810 0.0010 7 7 3.9369 4.9317 0.0020 8 6 3.2955 6.0138 -0.4817 9 8 2.2086 5.8896 -1.0126 10 7 3.8562 7.2345 -0.3720 11 6 5.1657 7.3842 0.2676 12 6 3.1563 8.4115 -0.8924 13 6 2.2813 8.9938 0.1876 14 1 2.2493 8.5329 1.1637 15 6 1.5206 10.1144 -0.0710 16 7 1.5591 10.6753 -1.2600 17 14 0.4365 10.8366 1.2678 18 1 1.2080 11.8431 2.0403 19 1 -0.7463 11.4876 0.6495 20 1 -0.0142 9.7532 2.1779 21 6 4.0594 2.5157 0.0005 22 9 5.4086 2.5867 0.0010 23 6 3.4313 1.2836 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2118 2.3172 0.0005 28 1 1.3263 4.5112 0.0109 29 1 4.8379 5.0176 0.3508 30 1 5.9498 7.2921 -0.4839 31 1 5.2291 8.3642 0.7407 32 1 5.2925 6.6078 1.0220 33 1 3.8855 9.1568 -1.2104 34 1 2.5394 8.1210 -1.7427 35 1 1.0243 11.4639 -1.4418 36 1 4.0193 0.3777 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603064277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = -68.717421 kcal Electronic energy + Delta-G solvation = -21826.924603 eV Core-core repulsion = 18226.984183 eV Total energy + Delta-G solvation = -3599.940420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.91033 -40.43209 -39.54526 -37.26494 -34.97322 -34.17284 -32.55156 -30.80000 -29.12313 -27.78511 -27.12431 -25.74992 -23.58291 -22.78558 -21.74834 -19.55907 -18.63819 -17.94448 -16.94890 -16.64289 -16.43315 -16.03124 -15.89546 -15.44797 -15.06699 -14.84629 -14.74527 -14.15751 -13.77548 -13.17962 -13.09754 -12.79292 -12.51996 -12.40374 -12.34110 -12.20635 -11.92815 -11.41024 -11.22882 -11.08904 -10.93381 -10.60968 -10.18392 -9.86646 -9.68737 -9.29575 -8.83864 -8.46584 -7.87036 -7.47255 -6.07319 -4.12377 1.12640 1.33943 2.99581 3.12294 3.28142 3.34962 3.39430 3.48063 3.92631 4.30084 4.34827 4.47598 4.75894 4.90537 4.98372 5.01394 5.23247 5.26817 5.33407 5.40035 5.47204 5.64615 5.82176 5.97385 6.10820 6.24824 6.38419 6.47884 6.72322 6.93439 7.28562 7.30066 7.43841 7.59457 7.89890 8.18950 8.48480 8.87872 9.13514 9.52966 11.00564 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.004261 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.368910 B = 6569.421481 C = 7544.135565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.190 4.190 5 C -0.067 4.067 6 C 0.123 3.877 7 N -0.689 5.689 8 C 0.699 3.301 9 O -0.568 6.568 10 N -0.609 5.609 11 C 0.081 3.919 12 C 0.259 3.741 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.091 3.909 22 F -0.136 7.136 23 C -0.167 4.167 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.167 0.833 29 H 0.405 0.595 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -17.624 3.915 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.076 3.924 4 C -0.209 4.209 5 C -0.087 4.087 6 C 0.025 3.975 7 N -0.338 5.338 8 C 0.401 3.599 9 O -0.445 6.445 10 N -0.344 5.344 11 C -0.063 4.063 12 C 0.140 3.860 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.068 3.932 22 F -0.115 7.115 23 C -0.187 4.187 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.154 0.846 28 H 0.184 0.816 29 H 0.241 0.759 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.882 -17.571 3.405 18.129 hybrid contribution -0.036 0.707 0.906 1.150 sum 2.846 -16.864 4.311 17.637 Atomic orbital electron populations 1.23071 0.78213 1.03797 1.01728 1.86032 1.21455 1.26580 1.89073 1.18522 0.91291 0.84391 0.98219 1.21251 1.00517 0.91424 1.07743 1.21375 0.92341 0.99347 0.95656 1.17520 0.92264 0.83418 1.04274 1.42860 1.19447 1.05725 1.65803 1.15880 0.84134 0.80273 0.79621 1.90838 1.20438 1.84265 1.48918 1.47523 1.19972 1.06370 1.60547 1.21634 0.85029 1.03001 0.96661 1.19284 0.91879 0.79569 0.95282 1.21445 1.25667 1.11304 0.98308 0.92424 1.24929 0.96697 0.96697 0.95711 1.69931 1.41067 1.21613 1.20705 0.86487 0.80100 0.79091 0.81674 1.20639 1.21064 1.19921 1.16889 0.76590 0.92396 1.07285 1.91466 1.28662 1.97050 1.94302 1.19892 0.92384 0.96658 1.09753 0.92476 0.92404 0.88334 0.84649 0.81623 0.75853 0.93482 0.90075 0.93016 0.94669 0.93562 0.92659 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.63 10.50 -19.66 -0.21 -3.84 16 3 C 0.12 1.57 6.69 -39.23 -0.26 1.31 16 4 C -0.19 -2.55 9.03 -39.44 -0.36 -2.91 16 5 C -0.07 -1.09 8.72 -39.42 -0.34 -1.44 16 6 C 0.12 2.00 6.44 -83.50 -0.54 1.46 16 7 N -0.69 -11.65 5.15 -14.13 -0.07 -11.72 16 8 C 0.70 14.82 8.08 -86.92 -0.70 14.12 16 9 O -0.57 -14.02 13.09 5.28 0.07 -13.95 16 10 N -0.61 -12.87 2.86 -188.74 -0.54 -13.41 16 11 C 0.08 1.26 10.16 59.85 0.61 1.87 16 12 C 0.26 6.67 5.16 -5.20 -0.03 6.65 16 13 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.74 5.46 -17.81 -0.10 1.64 16 16 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 21 C 0.09 1.30 7.30 -39.28 -0.29 1.01 16 22 F -0.14 -1.86 16.81 2.25 0.04 -1.82 16 23 C -0.17 -2.15 9.96 -39.39 -0.39 -2.54 16 24 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.06 0.42 7.66 -51.92 -0.40 0.03 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.14 1.50 6.29 -52.49 -0.33 1.17 16 28 H 0.17 3.16 5.78 -52.49 -0.30 2.86 16 29 H 0.40 5.70 6.26 -40.82 -0.26 5.45 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.05 0.66 6.45 -51.93 -0.33 0.33 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -32.53 312.86 -6.07 -38.60 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.06 Total: 3.06 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.73 Total: 7.31 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.12 Total: -50.61 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.14 Total: -17.79 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.53 -6.07 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603064277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.117 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds