Wall clock time and date at job start Tue Mar 31 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35974 * 116.99749 * 2 1 4 4 C 1.38718 * 119.98061 * 0.02759 * 3 2 1 5 5 C 1.38129 * 120.05551 * 179.72424 * 4 3 2 6 6 C 1.38777 * 120.00968 * 0.50092 * 5 4 3 7 7 N 1.40282 * 120.02373 * 179.76924 * 6 5 4 8 8 C 1.34770 * 119.99929 * 335.21793 * 7 6 5 9 9 O 1.21592 * 120.00545 * 354.32758 * 8 7 6 10 10 N 1.34780 * 120.00015 * 174.05203 * 8 7 6 11 11 C 1.46504 * 119.99710 * 0.27325 * 10 8 7 12 12 C 1.46499 * 120.00245 * 180.27663 * 10 8 7 13 13 C 1.50696 * 109.47081 * 89.99962 * 12 10 8 14 14 H 1.07996 * 120.00316 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99696 * 180.02562 * 13 12 10 16 16 N 1.31520 * 120.00090 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47336 * 89.99659 * 17 15 13 19 19 H 1.48495 * 109.47253 * 209.99851 * 17 15 13 20 20 H 1.48505 * 109.46754 * 329.99741 * 17 15 13 21 21 C 1.39015 * 119.95025 * 359.49947 * 6 5 4 22 22 F 1.35106 * 120.02354 * 180.27664 * 21 6 5 23 23 C 1.38287 * 119.95003 * 0.24607 * 21 6 5 24 24 H 1.09001 * 109.47140 * 299.99697 * 1 2 3 25 25 H 1.09008 * 109.47338 * 59.99887 * 1 2 3 26 26 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.97322 * 359.96794 * 4 3 2 28 28 H 1.07998 * 119.99920 * 180.24980 * 5 4 3 29 29 H 0.96995 * 119.99755 * 155.21170 * 7 6 5 30 30 H 1.09001 * 109.47018 * 90.00240 * 11 10 8 31 31 H 1.09002 * 109.47036 * 210.00229 * 11 10 8 32 32 H 1.08998 * 109.47319 * 329.99917 * 11 10 8 33 33 H 1.09007 * 109.46800 * 209.99855 * 12 10 8 34 34 H 1.08995 * 109.47062 * 329.99303 * 12 10 8 35 35 H 0.96999 * 120.00190 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.00401 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2903 2.3747 0.0006 5 6 1.9157 3.6062 0.0063 6 6 3.3014 3.6810 0.0010 7 7 3.9369 4.9317 0.0020 8 6 3.2955 6.0138 -0.4817 9 8 2.2086 5.8896 -1.0126 10 7 3.8562 7.2345 -0.3720 11 6 5.1657 7.3842 0.2676 12 6 3.1563 8.4115 -0.8924 13 6 2.2813 8.9938 0.1876 14 1 2.2493 8.5329 1.1637 15 6 1.5206 10.1144 -0.0710 16 7 1.5591 10.6753 -1.2600 17 14 0.4365 10.8366 1.2678 18 1 1.2080 11.8431 2.0403 19 1 -0.7463 11.4876 0.6495 20 1 -0.0142 9.7532 2.1779 21 6 4.0594 2.5157 0.0005 22 9 5.4086 2.5867 0.0010 23 6 3.4313 1.2836 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2118 2.3172 0.0005 28 1 1.3263 4.5112 0.0109 29 1 4.8379 5.0176 0.3508 30 1 5.9498 7.2921 -0.4839 31 1 5.2291 8.3642 0.7407 32 1 5.2925 6.6078 1.0220 33 1 3.8855 9.1568 -1.2104 34 1 2.5394 8.1210 -1.7427 35 1 1.0243 11.4639 -1.4418 36 1 4.0193 0.3777 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603064277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:39 Heat of formation + Delta-G solvation = -90.057351 kcal Electronic energy + Delta-G solvation = -21827.849972 eV Core-core repulsion = 18226.984183 eV Total energy + Delta-G solvation = -3600.865789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.01240 -41.76749 -40.74436 -38.43958 -36.66995 -35.63126 -34.56570 -31.89629 -30.48029 -29.37597 -28.03624 -27.29007 -25.23604 -24.17195 -22.97179 -21.07858 -19.81686 -19.17489 -18.68475 -18.36978 -17.62486 -17.08550 -16.90557 -16.82813 -16.48302 -16.30741 -16.01135 -15.71143 -15.01451 -14.81908 -14.54242 -14.00409 -13.90700 -13.58893 -13.51598 -13.45908 -13.20746 -13.12599 -12.82630 -12.52776 -12.42980 -12.20018 -12.06368 -11.73053 -11.16287 -10.86736 -10.62945 -9.96069 -9.55551 -8.72590 -8.20982 -6.36165 0.01816 0.18957 1.37999 1.40525 1.50068 1.59784 2.05955 2.19755 2.39010 2.60670 2.96327 3.08771 3.18798 3.71568 3.88194 4.16503 4.22737 4.25546 4.44345 4.46280 4.48622 4.61343 4.77029 4.80822 4.93289 4.98076 5.07537 5.19095 5.23758 5.32677 5.53460 5.71757 5.74874 5.98374 6.05694 6.32687 6.72140 6.94619 7.30214 7.53579 8.85444 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.004261 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.368910 B = 6569.421481 C = 7544.135565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.132 3.868 4 C -0.186 4.186 5 C -0.085 4.085 6 C 0.094 3.906 7 N -0.673 5.673 8 C 0.695 3.305 9 O -0.612 6.612 10 N -0.618 5.618 11 C 0.076 3.924 12 C 0.275 3.725 13 C -0.543 4.543 14 H 0.052 0.948 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.968 3.032 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.099 3.901 22 F -0.131 7.131 23 C -0.162 4.162 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.126 0.874 27 H 0.156 0.844 28 H 0.133 0.867 29 H 0.418 0.582 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.030 0.970 34 H 0.003 0.997 35 H 0.268 0.732 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 -19.452 5.339 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.086 3.914 4 C -0.205 4.205 5 C -0.106 4.106 6 C -0.002 4.002 7 N -0.323 5.323 8 C 0.397 3.603 9 O -0.493 6.493 10 N -0.352 5.352 11 C -0.067 4.067 12 C 0.154 3.846 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.199 1.199 21 C 0.077 3.923 22 F -0.110 7.110 23 C -0.181 4.181 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.144 0.856 27 H 0.173 0.827 28 H 0.151 0.849 29 H 0.258 0.742 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.280 -19.446 4.861 20.311 hybrid contribution -0.168 1.106 0.439 1.202 sum 3.112 -18.340 5.300 19.342 Atomic orbital electron populations 1.23413 0.76175 1.05912 1.02377 1.86050 1.23520 1.25427 1.88527 1.18578 0.91452 0.84733 0.96672 1.21384 1.01675 0.90585 1.06871 1.21150 0.92543 0.99323 0.97608 1.17688 0.92535 0.83511 1.06496 1.42500 1.19715 1.05002 1.65126 1.16015 0.83779 0.81039 0.79477 1.90809 1.22520 1.85111 1.50815 1.47390 1.21614 1.05246 1.60961 1.21919 0.82799 1.04033 0.97911 1.18745 0.91330 0.80872 0.93650 1.21697 1.26414 1.11648 0.98453 0.92933 1.25819 0.97967 0.97062 0.98038 1.70046 1.41937 1.22115 1.22601 0.85415 0.78255 0.78384 0.78733 1.18909 1.20606 1.19876 1.16828 0.76679 0.92061 1.06729 1.91480 1.28228 1.97038 1.94227 1.20176 0.92725 0.96900 1.08347 0.91594 0.91984 0.85613 0.82656 0.84927 0.74234 0.90894 0.90379 0.89935 0.95182 0.97910 0.92352 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.40 10.50 -93.26 -0.98 -7.37 16 3 C 0.13 3.11 6.69 22.49 0.15 3.26 16 4 C -0.19 -4.82 9.03 22.36 0.20 -4.62 16 5 C -0.09 -2.86 8.72 22.37 0.19 -2.67 16 6 C 0.09 3.05 6.44 38.10 0.25 3.29 16 7 N -0.67 -22.72 5.15 -316.87 -1.63 -24.35 16 8 C 0.69 30.37 8.08 179.06 1.45 31.82 16 9 O -0.61 -31.95 13.09 -4.01 -0.05 -32.00 16 10 N -0.62 -26.66 2.86 -869.30 -2.48 -29.14 16 11 C 0.08 2.28 10.16 127.77 1.30 3.57 16 12 C 0.28 14.80 5.16 85.63 0.44 15.24 16 13 C -0.54 -31.11 9.39 25.60 0.24 -30.87 16 14 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 15 C 0.01 0.59 5.46 84.66 0.46 1.05 16 16 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 17 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 C 0.10 2.67 7.30 22.47 0.16 2.83 16 22 F -0.13 -3.29 16.81 44.97 0.76 -2.54 16 23 C -0.16 -3.75 9.96 22.39 0.22 -3.53 16 24 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 25 H 0.06 0.75 7.66 -2.38 -0.02 0.73 16 26 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.16 3.25 6.29 -2.91 -0.02 3.23 16 28 H 0.13 5.40 5.78 -2.91 -0.02 5.38 16 29 H 0.42 11.28 6.26 -92.71 -0.58 10.69 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 32 H 0.08 1.95 6.45 -2.39 -0.02 1.94 16 33 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 34 H 0.00 0.17 7.42 -2.39 -0.02 0.15 16 35 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 36 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -72.72 312.86 4.64 -68.08 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.54 Total: 15.36 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.18 Total: 20.69 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -3.83 Total: -108.76 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -1.03 Total: -39.37 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.76 Total: -2.54 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -72.72 4.64 -68.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603064277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.979 kcal (2) G-P(sol) polarization free energy of solvation -72.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds