Wall clock time and date at job start Tue Mar 31 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 H 1.08999 * 109.46745 * 55.00039 * 3 2 1 5 5 C 1.52995 * 109.46684 * 174.99966 * 3 2 1 6 6 N 1.46498 * 109.46985 * 295.00148 * 3 2 1 7 7 C 1.34783 * 119.99599 * 154.99791 * 6 3 2 8 8 S 1.71195 * 120.00162 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99431 * 179.97438 * 7 6 3 10 10 C 1.40149 * 119.99528 * 185.11588 * 9 7 6 11 11 C 1.40406 * 125.97382 * 174.94187 * 10 9 7 12 12 C 1.35233 * 107.86815 * 179.97438 * 11 10 9 13 13 N 1.34968 * 107.86472 * 0.26088 * 12 11 10 14 14 C 1.46501 * 125.98028 * 179.69796 * 13 12 11 15 15 C 1.50697 * 109.47053 * 124.99965 * 14 13 12 16 16 H 1.07998 * 120.00069 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00097 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00262 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47198 * 90.00126 * 19 17 15 21 21 H 1.48496 * 109.47142 * 210.00148 * 19 17 15 22 22 H 1.48500 * 109.47131 * 330.00255 * 19 17 15 23 23 N 1.31222 * 125.97326 * 354.91569 * 10 9 7 24 24 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46582 * 299.99785 * 1 2 3 26 26 H 1.08999 * 109.47227 * 59.99380 * 1 2 3 27 27 H 1.09000 * 109.46582 * 240.00215 * 2 1 3 28 28 H 1.08997 * 109.46710 * 120.00563 * 2 1 3 29 29 H 1.08996 * 109.47598 * 299.99646 * 5 3 2 30 30 H 1.08999 * 109.47470 * 60.00517 * 5 3 2 31 31 H 1.09005 * 109.46617 * 180.02562 * 5 3 2 32 32 H 0.96994 * 120.00425 * 334.99793 * 6 3 2 33 33 H 0.96997 * 120.00117 * 5.11916 * 9 7 6 34 34 H 1.08003 * 126.06401 * 359.97438 * 11 10 9 35 35 H 1.08003 * 126.06817 * 179.97438 * 12 11 10 36 36 H 1.08993 * 109.47022 * 245.00570 * 14 13 12 37 37 H 1.09000 * 109.46864 * 5.00161 * 14 13 12 38 38 H 0.97003 * 120.00356 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6525 2.0975 -1.2518 7 6 1.5257 3.4385 -1.2995 8 16 1.8182 4.3763 0.1025 9 7 1.1696 4.0410 -2.4513 10 6 1.1418 5.4400 -2.5306 11 6 0.8889 6.1956 -3.6867 12 6 0.9503 7.5037 -3.3491 13 7 1.2368 7.5784 -2.0323 14 6 1.4010 8.8098 -1.2557 15 6 0.4676 8.7860 -0.0729 16 1 -0.1827 7.9382 0.0849 17 6 0.4437 9.8464 0.8079 18 7 1.2351 10.8789 0.6155 19 14 -0.7129 9.8166 2.2745 20 1 -0.0266 9.1913 3.4335 21 1 -1.1066 11.2055 2.6227 22 1 -1.9249 9.0293 1.9332 23 7 1.3471 6.2726 -1.5374 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8533 0.9569 1.0571 30 1 3.9995 0.9052 -0.7161 31 1 3.9282 2.4719 0.1262 32 1 1.4872 1.5661 -2.0462 33 1 0.9326 3.5065 -3.2252 34 1 0.6820 5.8020 -4.6709 35 1 0.8015 8.3402 -4.0159 36 1 2.4303 8.8835 -0.9049 37 1 1.1690 9.6694 -1.8844 38 1 1.2181 11.6252 1.2349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735417668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:03 Heat of formation + Delta-G solvation = 99.333614 kcal Electronic energy + Delta-G solvation = -19635.748281 eV Core-core repulsion = 16641.601027 eV Total energy + Delta-G solvation = -2994.147253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46450 -39.04304 -36.49593 -33.51721 -32.66071 -30.79508 -29.81887 -29.21339 -26.68248 -24.66979 -23.57090 -22.76398 -21.65808 -20.62044 -19.84702 -18.04947 -17.09927 -16.42314 -16.10664 -15.27306 -14.99145 -14.74408 -14.25676 -14.19294 -13.92988 -13.69473 -13.33505 -12.87344 -12.48600 -12.39736 -12.04980 -12.00914 -11.71789 -11.40697 -11.30260 -10.94959 -10.82605 -10.71426 -10.53497 -10.10584 -9.99064 -9.84771 -9.32969 -8.47469 -8.09305 -7.73226 -7.21559 -6.34286 -6.08134 -4.10380 1.52500 2.22111 2.73473 2.94270 3.37475 3.43328 3.45412 3.49926 3.61962 3.99915 4.43127 4.48547 4.72625 4.77739 5.25357 5.27089 5.30320 5.35533 5.41259 5.52707 5.59194 5.65692 5.72274 5.82895 5.94132 6.11549 6.17457 6.23111 6.43079 6.60639 6.76120 7.02261 7.23010 7.43722 7.56309 7.88716 8.04880 8.17179 8.76694 8.99562 9.54301 11.01265 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.004643 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.882363 B = 6028.937725 C = 6937.412007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C 0.143 3.857 4 H 0.115 0.885 5 C -0.164 4.164 6 N -0.688 5.688 7 C 0.525 3.475 8 S -0.521 6.521 9 N -0.590 5.590 10 C 0.229 3.771 11 C -0.309 4.309 12 C 0.057 3.943 13 N -0.332 5.332 14 C 0.258 3.742 15 C -0.516 4.516 16 H 0.071 0.929 17 C 0.061 3.939 18 N -0.900 5.900 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.183 5.183 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.390 0.610 33 H 0.402 0.598 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 -20.576 -8.138 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.038 3.962 4 H 0.133 0.867 5 C -0.223 4.223 6 N -0.320 5.320 7 C 0.170 3.830 8 S -0.393 6.393 9 N -0.216 5.216 10 C -0.026 4.026 11 C -0.342 4.342 12 C -0.093 4.093 13 N -0.113 5.113 14 C 0.140 3.860 15 C -0.555 4.555 16 H 0.089 0.911 17 C -0.141 4.141 18 N -0.539 5.539 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.012 5.012 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.225 0.775 33 H 0.240 0.760 34 H 0.151 0.849 35 H 0.181 0.819 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.122 -19.492 -5.657 20.327 hybrid contribution -1.130 -1.013 -1.755 2.321 sum -0.009 -20.505 -7.413 21.804 Atomic orbital electron populations 1.21792 0.95240 1.01625 1.02538 1.21870 0.96618 0.95270 1.03123 1.21433 0.95987 0.92412 0.86345 0.86724 1.22170 0.94486 1.04000 1.01664 1.44995 1.69093 1.03317 1.14594 1.22646 0.82615 0.86003 0.91739 1.93751 1.67234 1.59650 1.18681 1.41605 1.64316 1.04257 1.11410 1.19174 1.07446 0.81656 0.94353 1.20635 1.23669 0.91956 0.97983 1.22385 1.01281 0.97607 0.88075 1.50305 1.47427 1.07725 1.05864 1.19699 0.99063 0.75976 0.91297 1.21255 1.21592 1.04340 1.08293 0.91122 1.24900 0.96086 0.95022 0.98054 1.69924 1.38442 1.07774 1.37765 0.86353 0.80929 0.76875 0.82505 1.20314 1.21248 1.19783 1.80056 1.20405 0.86117 1.14637 0.92562 0.92024 0.92932 0.91718 0.89795 0.91247 0.93109 0.90508 0.77475 0.76046 0.84855 0.81881 0.93656 0.93049 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.80 37.16 0.36 -0.77 16 2 C -0.13 -0.89 5.47 -26.73 -0.15 -1.03 16 3 C 0.14 1.42 2.34 -67.93 -0.16 1.26 16 4 H 0.12 1.48 6.82 -51.93 -0.35 1.12 16 5 C -0.16 -1.63 9.43 37.16 0.35 -1.28 16 6 N -0.69 -7.12 4.53 -55.52 -0.25 -7.37 16 7 C 0.53 8.10 7.92 -86.91 -0.69 7.41 16 8 S -0.52 -11.28 24.62 -107.50 -2.65 -13.92 16 9 N -0.59 -8.59 5.45 -12.67 -0.07 -8.66 16 10 C 0.23 4.39 7.76 -154.40 -1.20 3.20 16 11 C -0.31 -5.25 10.82 -39.84 -0.43 -5.68 16 12 C 0.06 1.08 11.44 -17.24 -0.20 0.88 16 13 N -0.33 -7.81 3.67 -62.57 -0.23 -8.04 16 14 C 0.26 6.79 6.26 -5.19 -0.03 6.75 16 15 C -0.52 -15.08 9.23 -34.44 -0.32 -15.39 16 16 H 0.07 2.17 7.81 -52.49 -0.41 1.76 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.91 22.72 29.54 -169.99 -5.02 17.70 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 N -0.18 -4.37 9.05 31.44 0.28 -4.08 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.40 7.75 -51.93 -0.40 0.00 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 1.02 7.48 -51.93 -0.39 0.63 16 32 H 0.39 2.69 8.62 -40.82 -0.35 2.34 16 33 H 0.40 3.92 8.84 -40.82 -0.36 3.56 16 34 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 35 H 0.16 2.46 8.06 -52.48 -0.42 2.04 16 36 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 1.31 8.07 -51.93 -0.42 0.89 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -35.55 334.22 -10.34 -45.89 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.63 Total: 2.21 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.55 Total: -2.98 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.47 Total: -53.94 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: -11.28 SS G_CDS: -2.65 Total: -13.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.55 -10.34 -45.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735417668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.222 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds