Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 H 1.08999 * 109.46745 * 55.00039 * 3 2 1 5 5 C 1.52995 * 109.46684 * 174.99966 * 3 2 1 6 6 N 1.46498 * 109.46985 * 295.00148 * 3 2 1 7 7 C 1.34783 * 119.99599 * 154.99791 * 6 3 2 8 8 S 1.71195 * 120.00162 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99431 * 179.97438 * 7 6 3 10 10 C 1.40149 * 119.99528 * 185.11588 * 9 7 6 11 11 C 1.40406 * 125.97382 * 174.94187 * 10 9 7 12 12 C 1.35233 * 107.86815 * 179.97438 * 11 10 9 13 13 N 1.34968 * 107.86472 * 0.26088 * 12 11 10 14 14 C 1.46501 * 125.98028 * 179.69796 * 13 12 11 15 15 C 1.50697 * 109.47053 * 124.99965 * 14 13 12 16 16 H 1.07998 * 120.00069 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00097 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00262 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47198 * 90.00126 * 19 17 15 21 21 H 1.48496 * 109.47142 * 210.00148 * 19 17 15 22 22 H 1.48500 * 109.47131 * 330.00255 * 19 17 15 23 23 N 1.31222 * 125.97326 * 354.91569 * 10 9 7 24 24 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46582 * 299.99785 * 1 2 3 26 26 H 1.08999 * 109.47227 * 59.99380 * 1 2 3 27 27 H 1.09000 * 109.46582 * 240.00215 * 2 1 3 28 28 H 1.08997 * 109.46710 * 120.00563 * 2 1 3 29 29 H 1.08996 * 109.47598 * 299.99646 * 5 3 2 30 30 H 1.08999 * 109.47470 * 60.00517 * 5 3 2 31 31 H 1.09005 * 109.46617 * 180.02562 * 5 3 2 32 32 H 0.96994 * 120.00425 * 334.99793 * 6 3 2 33 33 H 0.96997 * 120.00117 * 5.11916 * 9 7 6 34 34 H 1.08003 * 126.06401 * 359.97438 * 11 10 9 35 35 H 1.08003 * 126.06817 * 179.97438 * 12 11 10 36 36 H 1.08993 * 109.47022 * 245.00570 * 14 13 12 37 37 H 1.09000 * 109.46864 * 5.00161 * 14 13 12 38 38 H 0.97003 * 120.00356 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6525 2.0975 -1.2518 7 6 1.5257 3.4385 -1.2995 8 16 1.8182 4.3763 0.1025 9 7 1.1696 4.0410 -2.4513 10 6 1.1418 5.4400 -2.5306 11 6 0.8889 6.1956 -3.6867 12 6 0.9503 7.5037 -3.3491 13 7 1.2368 7.5784 -2.0323 14 6 1.4010 8.8098 -1.2557 15 6 0.4676 8.7860 -0.0729 16 1 -0.1827 7.9382 0.0849 17 6 0.4437 9.8464 0.8079 18 7 1.2351 10.8789 0.6155 19 14 -0.7129 9.8166 2.2745 20 1 -0.0266 9.1913 3.4335 21 1 -1.1066 11.2055 2.6227 22 1 -1.9249 9.0293 1.9332 23 7 1.3471 6.2726 -1.5374 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8533 0.9569 1.0571 30 1 3.9995 0.9052 -0.7161 31 1 3.9282 2.4719 0.1262 32 1 1.4872 1.5661 -2.0462 33 1 0.9326 3.5065 -3.2252 34 1 0.6820 5.8020 -4.6709 35 1 0.8015 8.3402 -4.0159 36 1 2.4303 8.8835 -0.9049 37 1 1.1690 9.6694 -1.8844 38 1 1.2181 11.6252 1.2349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735417668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = 75.964335 kcal Electronic energy + Delta-G solvation = -19636.761649 eV Core-core repulsion = 16641.601027 eV Total energy + Delta-G solvation = -2995.160621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.98087 -40.20510 -37.65445 -35.47399 -33.90832 -32.42159 -30.83195 -30.63684 -28.56766 -25.99420 -24.72804 -24.31876 -22.73590 -22.01089 -21.25697 -19.32410 -18.64251 -18.36895 -17.45868 -16.66573 -16.53280 -16.17434 -15.86802 -15.37635 -14.91047 -14.61918 -14.46534 -14.40220 -14.06931 -13.82507 -13.56547 -13.15544 -12.85256 -12.71355 -12.68416 -12.36527 -12.22687 -12.03942 -11.96507 -11.71888 -11.66417 -11.33882 -10.99978 -10.67780 -9.63166 -9.23720 -8.81905 -8.28421 -7.96237 -6.39287 0.18944 0.92263 1.30169 1.34134 1.37767 1.42739 1.50337 2.14609 2.19962 2.38143 2.65811 3.03223 3.70832 3.96906 4.02884 4.14577 4.27996 4.48784 4.55143 4.69837 4.75163 4.82502 4.84098 4.92653 4.98565 5.07264 5.09774 5.12261 5.13241 5.33337 5.39437 5.47608 5.63169 5.80330 5.96472 6.13069 6.37459 6.42473 6.74616 7.25190 7.29359 8.79487 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.004643 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.882363 B = 6028.937725 C = 6937.412007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.138 3.862 4 H 0.082 0.918 5 C -0.159 4.159 6 N -0.649 5.649 7 C 0.561 3.439 8 S -0.656 6.656 9 N -0.570 5.570 10 C 0.227 3.773 11 C -0.286 4.286 12 C 0.050 3.950 13 N -0.366 5.366 14 C 0.276 3.724 15 C -0.533 4.533 16 H 0.045 0.955 17 C 0.018 3.982 18 N -0.923 5.923 19 Si 0.965 3.035 20 H -0.282 1.282 21 H -0.266 1.266 22 H -0.273 1.273 23 N -0.243 5.243 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.417 0.583 33 H 0.433 0.567 34 H 0.185 0.815 35 H 0.198 0.802 36 H 0.010 0.990 37 H 0.057 0.943 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -23.403 -10.637 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C 0.034 3.966 4 H 0.100 0.900 5 C -0.217 4.217 6 N -0.281 5.281 7 C 0.199 3.801 8 S -0.530 6.530 9 N -0.199 5.199 10 C -0.030 4.030 11 C -0.318 4.318 12 C -0.098 4.098 13 N -0.148 5.148 14 C 0.156 3.844 15 C -0.572 4.572 16 H 0.064 0.936 17 C -0.181 4.181 18 N -0.562 5.562 19 Si 0.790 3.210 20 H -0.208 1.208 21 H -0.190 1.190 22 H -0.198 1.198 23 N -0.071 5.071 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.257 0.743 33 H 0.275 0.725 34 H 0.203 0.797 35 H 0.215 0.785 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.201 -22.398 -8.227 23.862 hybrid contribution -0.833 -0.371 -1.135 1.456 sum -0.632 -22.769 -9.362 24.627 Atomic orbital electron populations 1.21812 0.95616 1.02489 1.01448 1.21830 0.96082 0.92495 1.05194 1.21579 0.96193 0.94088 0.84718 0.90023 1.22104 0.94068 1.01983 1.03568 1.44967 1.65614 1.01389 1.16107 1.21876 0.81299 0.86983 0.89925 1.94096 1.72837 1.62577 1.23449 1.41300 1.63619 1.03012 1.12012 1.19587 1.05799 0.83170 0.94432 1.21130 1.20943 0.90613 0.99064 1.23161 1.00185 0.99890 0.86597 1.49952 1.50596 1.06817 1.07412 1.19140 0.96301 0.77892 0.91039 1.21358 1.22045 1.03675 1.10077 0.93644 1.25646 0.97486 0.94639 1.00371 1.69988 1.39308 1.08203 1.38736 0.85458 0.78865 0.77729 0.78996 1.20770 1.19015 1.19824 1.80029 1.22903 0.86873 1.17323 0.90723 0.94103 0.93120 0.88887 0.88422 0.89774 0.90727 0.94460 0.74297 0.72473 0.79745 0.78511 0.97180 0.92519 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.80 71.98 0.71 -1.18 16 2 C -0.12 -1.20 5.47 30.60 0.17 -1.03 16 3 C 0.14 2.56 2.34 44.99 0.11 2.66 16 4 H 0.08 2.19 6.82 -2.39 -0.02 2.17 16 5 C -0.16 -2.96 9.43 71.98 0.68 -2.28 16 6 N -0.65 -11.92 4.53 -329.58 -1.49 -13.41 16 7 C 0.56 16.90 7.92 179.05 1.42 18.32 16 8 S -0.66 -30.27 24.62 -56.49 -1.39 -31.66 16 9 N -0.57 -15.28 5.45 -194.01 -1.06 -16.34 16 10 C 0.23 8.47 7.76 133.33 1.04 9.51 16 11 C -0.29 -8.78 10.82 22.10 0.24 -8.55 16 12 C 0.05 1.80 11.44 83.52 0.96 2.76 16 13 N -0.37 -17.71 3.67 -351.86 -1.29 -19.00 16 14 C 0.28 15.30 6.26 85.63 0.54 15.83 16 15 C -0.53 -32.63 9.23 25.60 0.24 -32.40 16 16 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 17 C 0.02 1.08 5.46 84.65 0.46 1.54 16 18 N -0.92 -55.67 13.29 21.45 0.28 -55.38 16 19 Si 0.96 47.83 29.54 68.60 2.03 49.85 16 20 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 23 N -0.24 -11.99 9.05 -54.46 -0.49 -12.48 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.62 7.75 -2.39 -0.02 0.60 16 27 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 1.02 7.48 -2.38 -0.02 1.00 16 32 H 0.42 3.84 8.62 -92.71 -0.80 3.04 16 33 H 0.43 6.48 8.84 -92.71 -0.82 5.66 16 34 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 35 H 0.20 5.46 8.06 -2.91 -0.02 5.44 16 36 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -85.93 334.22 2.58 -83.35 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -0.55 Total: 9.89 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.54 Total: 5.19 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -4.05 Total: -116.62 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.85 kcal Atomic # 16 Polarization: -30.27 SS G_CDS: -1.39 Total: -31.66 kcal Total: -85.93 2.58 -83.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735417668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.315 kcal (2) G-P(sol) polarization free energy of solvation -85.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds