Wall clock time and date at job start Tue Mar 31 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 H 1.08997 * 109.46560 * 304.99653 * 3 2 1 5 5 C 1.52997 * 109.46738 * 184.99900 * 3 2 1 6 6 N 1.46496 * 109.47195 * 64.99634 * 3 2 1 7 7 C 1.34780 * 119.99745 * 205.00203 * 6 3 2 8 8 S 1.71197 * 119.99880 * 359.97438 * 7 6 3 9 9 N 1.34770 * 120.00012 * 180.02562 * 7 6 3 10 10 C 1.40149 * 120.00400 * 185.10787 * 9 7 6 11 11 C 1.40408 * 125.97489 * 174.94052 * 10 9 7 12 12 C 1.35239 * 107.86511 * 179.75795 * 11 10 9 13 13 N 1.34970 * 107.86256 * 0.24860 * 12 11 10 14 14 C 1.46502 * 125.97666 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46901 * 124.99579 * 14 13 12 16 16 H 1.07995 * 120.00301 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00245 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99771 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47392 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46479 * 120.00448 * 19 17 15 22 22 H 1.48498 * 109.47258 * 240.00195 * 19 17 15 23 23 N 1.31219 * 125.96716 * 355.14403 * 10 9 7 24 24 H 1.09002 * 109.47252 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46900 * 300.00510 * 1 2 3 26 26 H 1.08999 * 109.46585 * 60.00261 * 1 2 3 27 27 H 1.08997 * 109.47419 * 239.99347 * 2 1 3 28 28 H 1.09004 * 109.47018 * 119.99581 * 2 1 3 29 29 H 1.09002 * 109.46793 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.47394 * 299.99243 * 5 3 2 31 31 H 1.09002 * 109.47656 * 59.99715 * 5 3 2 32 32 H 0.96998 * 120.00284 * 25.00205 * 6 3 2 33 33 H 0.97008 * 119.99891 * 5.11077 * 9 7 6 34 34 H 1.07998 * 126.06784 * 0.03068 * 11 10 9 35 35 H 1.07994 * 126.07247 * 180.26338 * 12 11 10 36 36 H 1.08997 * 109.46836 * 244.99367 * 14 13 12 37 37 H 1.08997 * 109.46862 * 5.00186 * 14 13 12 38 38 H 0.96999 * 120.00283 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4442 -0.1257 6 7 1.6524 2.0975 1.2517 7 6 1.5256 3.4385 1.2994 8 16 1.8181 4.3763 -0.1027 9 7 1.1695 4.0412 2.4510 10 6 0.9333 5.4224 2.4753 11 6 0.4626 6.1595 3.5737 12 6 0.3738 7.4552 3.1965 13 7 0.7667 7.5391 1.9080 14 6 0.8237 8.7622 1.1036 15 6 2.2106 8.9268 0.5373 16 1 2.9731 8.1935 0.7545 17 6 2.5056 10.0131 -0.2589 18 7 1.5770 10.9058 -0.5239 19 14 4.2249 10.2175 -0.9602 20 1 5.0783 9.0861 -0.5164 21 1 4.1557 10.2326 -2.4436 22 1 4.8072 11.4959 -0.4788 23 7 1.1099 6.2522 1.4742 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9282 2.4719 -0.1262 30 1 3.9995 0.9053 0.7162 31 1 3.8533 0.9568 -1.0570 32 1 1.4871 1.5662 2.0462 33 1 1.0768 3.5190 3.2632 34 1 0.2192 5.7629 4.5483 35 1 0.0468 8.2769 3.8163 36 1 0.1039 8.6944 0.2879 37 1 0.5829 9.6208 1.7304 38 1 1.7846 11.6702 -1.0838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735417669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:04 Heat of formation + Delta-G solvation = 99.339182 kcal Electronic energy + Delta-G solvation = -19636.746726 eV Core-core repulsion = 16642.599714 eV Total energy + Delta-G solvation = -2994.147012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46285 -39.04288 -36.49564 -33.51735 -32.66169 -30.79401 -29.81655 -29.21289 -26.68359 -24.66892 -23.57058 -22.76598 -21.65957 -20.61573 -19.84310 -18.04695 -17.10335 -16.42884 -16.12398 -15.20992 -14.99534 -14.81451 -14.26236 -14.13918 -13.93103 -13.69833 -13.33157 -12.86107 -12.56899 -12.32230 -12.07215 -12.00828 -11.70962 -11.42119 -11.29178 -10.94735 -10.82518 -10.71128 -10.54085 -10.09916 -10.03321 -9.78954 -9.33341 -8.48087 -8.09198 -7.73248 -7.21352 -6.33875 -6.08369 -4.10503 1.52541 2.22154 2.73545 2.94329 3.35241 3.42766 3.45704 3.52596 3.62139 4.00082 4.43086 4.48586 4.72648 4.77565 5.25390 5.27029 5.30501 5.35720 5.41093 5.52753 5.59203 5.65521 5.72357 5.82900 5.93774 6.11679 6.17588 6.23978 6.43131 6.60687 6.76162 7.02287 7.23074 7.43751 7.56398 7.88785 8.04767 8.17189 8.76825 8.99807 9.54228 11.01065 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.004618 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.549759 B = 6061.202510 C = 7049.349043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.143 3.857 4 H 0.115 0.885 5 C -0.165 4.165 6 N -0.688 5.688 7 C 0.525 3.475 8 S -0.521 6.521 9 N -0.590 5.590 10 C 0.229 3.771 11 C -0.309 4.309 12 C 0.057 3.943 13 N -0.332 5.332 14 C 0.257 3.743 15 C -0.516 4.516 16 H 0.071 0.929 17 C 0.061 3.939 18 N -0.900 5.900 19 Si 0.905 3.095 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.284 1.284 23 N -0.183 5.183 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.390 0.610 33 H 0.402 0.598 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -20.805 7.454 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.038 3.962 4 H 0.133 0.867 5 C -0.224 4.224 6 N -0.320 5.320 7 C 0.170 3.830 8 S -0.393 6.393 9 N -0.216 5.216 10 C -0.026 4.026 11 C -0.342 4.342 12 C -0.094 4.094 13 N -0.113 5.113 14 C 0.139 3.861 15 C -0.554 4.554 16 H 0.089 0.911 17 C -0.141 4.141 18 N -0.539 5.539 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.210 1.210 23 N -0.012 5.012 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.240 0.760 34 H 0.151 0.849 35 H 0.181 0.819 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.513 -19.730 4.965 20.401 hybrid contribution 0.334 -0.874 2.145 2.340 sum -1.180 -20.605 7.110 21.829 Atomic orbital electron populations 1.21791 0.95235 1.01610 1.02530 1.21867 0.96620 0.95247 1.03125 1.21438 0.95972 0.92425 0.86321 0.86708 1.22179 0.94520 1.04033 1.01686 1.44994 1.69242 1.03202 1.14571 1.22644 0.82439 0.85940 0.91945 1.93752 1.66352 1.59677 1.19543 1.41609 1.65185 1.05913 1.08899 1.19175 1.05701 0.82296 0.95449 1.20635 1.21139 0.92835 0.99634 1.22385 1.00955 0.97572 0.88447 1.50309 1.44051 1.08648 1.08317 1.19707 0.99522 0.76188 0.90663 1.21301 0.95395 1.08195 1.30520 0.91067 1.24905 0.97956 0.95401 0.95836 1.69930 1.33189 1.12550 1.38215 0.86309 0.83784 0.77814 0.78863 1.19461 1.20768 1.21040 1.80063 1.18543 0.86899 1.15699 0.92574 0.92914 0.92037 0.89793 0.91723 0.90493 0.93103 0.91238 0.77477 0.76040 0.84856 0.81885 0.93642 0.93049 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.80 37.16 0.36 -0.75 16 2 C -0.13 -0.88 5.47 -26.73 -0.15 -1.03 16 3 C 0.14 1.42 2.34 -67.93 -0.16 1.26 16 4 H 0.12 1.47 6.82 -51.93 -0.35 1.12 16 5 C -0.17 -1.67 9.43 37.16 0.35 -1.32 16 6 N -0.69 -7.13 4.53 -55.53 -0.25 -7.38 16 7 C 0.53 8.11 7.92 -86.92 -0.69 7.43 16 8 S -0.52 -11.29 24.62 -107.50 -2.65 -13.93 16 9 N -0.59 -8.59 5.45 -12.68 -0.07 -8.66 16 10 C 0.23 4.40 7.76 -154.40 -1.20 3.20 16 11 C -0.31 -5.25 10.83 -39.83 -0.43 -5.68 16 12 C 0.06 1.07 11.44 -17.24 -0.20 0.88 16 13 N -0.33 -7.81 3.67 -62.56 -0.23 -8.04 16 14 C 0.26 6.77 6.26 -5.19 -0.03 6.74 16 15 C -0.52 -15.05 9.24 -34.44 -0.32 -15.37 16 16 H 0.07 2.19 7.81 -52.49 -0.41 1.78 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 19 Si 0.90 22.69 29.54 -169.99 -5.02 17.67 16 20 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 N -0.18 -4.36 9.05 31.44 0.28 -4.08 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.40 7.75 -51.93 -0.40 -0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 1.05 7.48 -51.93 -0.39 0.66 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.39 2.70 8.62 -40.82 -0.35 2.34 16 33 H 0.40 3.93 8.84 -40.82 -0.36 3.57 16 34 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.16 2.46 8.06 -52.49 -0.42 2.04 16 36 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 1.31 8.07 -51.93 -0.42 0.89 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -35.58 334.23 -10.34 -45.92 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.63 Total: 2.21 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.55 Total: -2.98 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.47 Total: -53.94 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: -11.29 SS G_CDS: -2.65 Total: -13.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.58 -10.34 -45.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735417669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.263 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds