Wall clock time and date at job start Tue Mar 31 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 H 1.08997 * 109.46560 * 304.99653 * 3 2 1 5 5 C 1.52997 * 109.46738 * 184.99900 * 3 2 1 6 6 N 1.46496 * 109.47195 * 64.99634 * 3 2 1 7 7 C 1.34780 * 119.99745 * 205.00203 * 6 3 2 8 8 S 1.71197 * 119.99880 * 359.97438 * 7 6 3 9 9 N 1.34770 * 120.00012 * 180.02562 * 7 6 3 10 10 C 1.40149 * 120.00400 * 185.10787 * 9 7 6 11 11 C 1.40408 * 125.97489 * 174.94052 * 10 9 7 12 12 C 1.35239 * 107.86511 * 179.75795 * 11 10 9 13 13 N 1.34970 * 107.86256 * 0.24860 * 12 11 10 14 14 C 1.46502 * 125.97666 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46901 * 124.99579 * 14 13 12 16 16 H 1.07995 * 120.00301 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00245 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99771 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47392 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46479 * 120.00448 * 19 17 15 22 22 H 1.48498 * 109.47258 * 240.00195 * 19 17 15 23 23 N 1.31219 * 125.96716 * 355.14403 * 10 9 7 24 24 H 1.09002 * 109.47252 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46900 * 300.00510 * 1 2 3 26 26 H 1.08999 * 109.46585 * 60.00261 * 1 2 3 27 27 H 1.08997 * 109.47419 * 239.99347 * 2 1 3 28 28 H 1.09004 * 109.47018 * 119.99581 * 2 1 3 29 29 H 1.09002 * 109.46793 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.47394 * 299.99243 * 5 3 2 31 31 H 1.09002 * 109.47656 * 59.99715 * 5 3 2 32 32 H 0.96998 * 120.00284 * 25.00205 * 6 3 2 33 33 H 0.97008 * 119.99891 * 5.11077 * 9 7 6 34 34 H 1.07998 * 126.06784 * 0.03068 * 11 10 9 35 35 H 1.07994 * 126.07247 * 180.26338 * 12 11 10 36 36 H 1.08997 * 109.46836 * 244.99367 * 14 13 12 37 37 H 1.08997 * 109.46862 * 5.00186 * 14 13 12 38 38 H 0.96999 * 120.00283 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4442 -0.1257 6 7 1.6524 2.0975 1.2517 7 6 1.5256 3.4385 1.2994 8 16 1.8181 4.3763 -0.1027 9 7 1.1695 4.0412 2.4510 10 6 0.9333 5.4224 2.4753 11 6 0.4626 6.1595 3.5737 12 6 0.3738 7.4552 3.1965 13 7 0.7667 7.5391 1.9080 14 6 0.8237 8.7622 1.1036 15 6 2.2106 8.9268 0.5373 16 1 2.9731 8.1935 0.7545 17 6 2.5056 10.0131 -0.2589 18 7 1.5770 10.9058 -0.5239 19 14 4.2249 10.2175 -0.9602 20 1 5.0783 9.0861 -0.5164 21 1 4.1557 10.2326 -2.4436 22 1 4.8072 11.4959 -0.4788 23 7 1.1099 6.2522 1.4742 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9282 2.4719 -0.1262 30 1 3.9995 0.9053 0.7162 31 1 3.8533 0.9568 -1.0570 32 1 1.4871 1.5662 2.0462 33 1 1.0768 3.5190 3.2632 34 1 0.2192 5.7629 4.5483 35 1 0.0468 8.2769 3.8163 36 1 0.1039 8.6944 0.2879 37 1 0.5829 9.6208 1.7304 38 1 1.7846 11.6702 -1.0838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735417669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:04 Heat of formation + Delta-G solvation = 75.921655 kcal Electronic energy + Delta-G solvation = -19637.762186 eV Core-core repulsion = 16642.599714 eV Total energy + Delta-G solvation = -2995.162472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.98000 -40.20656 -37.65525 -35.47428 -33.90847 -32.42093 -30.83007 -30.63971 -28.56966 -25.99588 -24.72530 -24.32254 -22.73866 -22.00805 -21.25196 -19.32259 -18.64866 -18.36871 -17.47340 -16.71611 -16.41265 -16.27030 -15.81243 -15.39924 -14.91071 -14.61499 -14.46079 -14.39551 -14.08992 -13.83066 -13.53048 -13.18701 -12.86474 -12.70306 -12.66518 -12.35287 -12.25542 -12.05073 -11.95914 -11.72484 -11.67150 -11.28789 -11.03387 -10.67034 -9.63174 -9.24005 -8.81871 -8.28576 -7.95967 -6.39414 0.18807 0.92152 1.30066 1.33696 1.36531 1.42627 1.52288 2.14280 2.20428 2.38237 2.65728 3.02925 3.70804 3.97141 4.02622 4.14650 4.28088 4.48668 4.55166 4.69632 4.75302 4.82391 4.84033 4.92316 4.98612 5.07315 5.09978 5.12396 5.13399 5.33290 5.39372 5.47558 5.63251 5.80252 5.96402 6.13048 6.37393 6.42531 6.74804 7.25225 7.29341 8.79439 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.004618 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.549759 B = 6061.202510 C = 7049.349043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.139 3.861 4 H 0.083 0.917 5 C -0.160 4.160 6 N -0.649 5.649 7 C 0.561 3.439 8 S -0.656 6.656 9 N -0.570 5.570 10 C 0.227 3.773 11 C -0.286 4.286 12 C 0.050 3.950 13 N -0.366 5.366 14 C 0.276 3.724 15 C -0.533 4.533 16 H 0.045 0.955 17 C 0.018 3.982 18 N -0.923 5.923 19 Si 0.965 3.035 20 H -0.281 1.281 21 H -0.277 1.277 22 H -0.263 1.263 23 N -0.243 5.243 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.417 0.583 33 H 0.433 0.567 34 H 0.185 0.815 35 H 0.198 0.802 36 H 0.010 0.990 37 H 0.057 0.943 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 -23.503 10.224 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.035 3.965 4 H 0.101 0.899 5 C -0.218 4.218 6 N -0.281 5.281 7 C 0.200 3.800 8 S -0.530 6.530 9 N -0.200 5.200 10 C -0.030 4.030 11 C -0.318 4.318 12 C -0.098 4.098 13 N -0.148 5.148 14 C 0.156 3.844 15 C -0.571 4.571 16 H 0.063 0.937 17 C -0.182 4.182 18 N -0.562 5.562 19 Si 0.790 3.210 20 H -0.206 1.206 21 H -0.203 1.203 22 H -0.187 1.187 23 N -0.071 5.071 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.257 0.743 33 H 0.275 0.725 34 H 0.203 0.797 35 H 0.215 0.785 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.364 -22.504 7.803 23.858 hybrid contribution 0.225 -0.278 1.421 1.465 sum -1.139 -22.782 9.224 24.605 Atomic orbital electron populations 1.21808 0.95542 1.02489 1.01472 1.21827 0.96145 0.92426 1.05179 1.21581 0.96098 0.94142 0.84720 0.89943 1.22115 0.94207 1.01933 1.03590 1.44966 1.65776 1.01259 1.16084 1.21875 0.81107 0.86930 0.90138 1.94097 1.72073 1.62581 1.24229 1.41303 1.64303 1.04664 1.09685 1.19590 1.04341 0.83709 0.95349 1.21132 1.18519 0.91480 1.00622 1.23162 0.99974 0.99761 0.86935 1.49956 1.47096 1.07822 1.09905 1.19148 0.97024 0.78001 0.90235 1.21388 0.96312 1.07851 1.31540 0.93684 1.25652 1.01605 0.95033 0.95884 1.69993 1.34738 1.12929 1.38572 0.85404 0.79360 0.78047 0.78214 1.20601 1.20278 1.18736 1.80035 1.20944 0.87711 1.18446 0.90725 0.93124 0.94034 0.88417 0.88931 0.94556 0.90737 0.89761 0.74296 0.72464 0.79742 0.78506 0.97157 0.92508 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.80 71.98 0.71 -1.13 16 2 C -0.12 -1.19 5.47 30.60 0.17 -1.02 16 3 C 0.14 2.57 2.34 44.99 0.11 2.68 16 4 H 0.08 2.20 6.82 -2.39 -0.02 2.18 16 5 C -0.16 -3.04 9.43 71.98 0.68 -2.36 16 6 N -0.65 -11.95 4.53 -329.58 -1.49 -13.44 16 7 C 0.56 16.95 7.92 179.06 1.42 18.37 16 8 S -0.66 -30.34 24.62 -56.49 -1.39 -31.73 16 9 N -0.57 -15.32 5.45 -194.02 -1.06 -16.38 16 10 C 0.23 8.48 7.76 133.33 1.04 9.52 16 11 C -0.29 -8.79 10.83 22.11 0.24 -8.55 16 12 C 0.05 1.80 11.44 83.52 0.96 2.76 16 13 N -0.37 -17.72 3.67 -351.84 -1.29 -19.01 16 14 C 0.28 15.28 6.26 85.63 0.54 15.82 16 15 C -0.53 -32.62 9.24 25.60 0.24 -32.38 16 16 H 0.04 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.02 1.06 5.46 84.66 0.46 1.52 16 18 N -0.92 -55.63 13.29 21.45 0.28 -55.34 16 19 Si 0.96 47.82 29.54 68.60 2.03 49.85 16 20 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 23 N -0.24 -12.01 9.05 -54.46 -0.49 -12.50 16 24 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.05 0.61 7.75 -2.38 -0.02 0.59 16 26 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.04 1.01 7.48 -2.39 -0.02 0.99 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.42 3.86 8.62 -92.71 -0.80 3.06 16 33 H 0.43 6.49 8.84 -92.70 -0.82 5.67 16 34 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 35 H 0.20 5.46 8.06 -2.91 -0.02 5.44 16 36 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -86.09 334.23 2.58 -83.51 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -0.55 Total: 9.84 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.54 Total: 5.21 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -4.05 Total: -116.68 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Atomic # 16 Polarization: -30.34 SS G_CDS: -1.39 Total: -31.73 kcal Total: -86.09 2.58 -83.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735417669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.432 kcal (2) G-P(sol) polarization free energy of solvation -86.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds