Wall clock time and date at job start Tue Mar 31 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38962 * 125.57271 * 2 1 4 4 C 1.38815 * 107.71054 * 179.83743 * 3 2 1 5 5 N 1.34562 * 131.23119 * 180.12447 * 4 3 2 6 6 C 1.31548 * 122.03553 * 180.33659 * 5 4 3 7 7 N 1.38032 * 120.53272 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99946 * 359.97438 * 7 6 5 9 9 C 1.50700 * 109.46608 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00386 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99761 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99904 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99951 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47232 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46981 * 120.00228 * 13 11 9 16 16 H 1.48500 * 109.47059 * 240.00384 * 13 11 9 17 17 C 1.46953 * 118.92891 * 359.97438 * 6 5 4 18 18 C 1.39512 * 121.75030 * 179.97438 * 17 6 5 19 19 C 1.36755 * 119.61586 * 180.02562 * 18 17 6 20 20 C 1.38759 * 120.62351 * 359.97126 * 19 18 17 21 21 C 1.37941 * 120.66173 * 0.02795 * 20 19 18 22 22 C 1.38814 * 119.58539 * 359.97438 * 21 20 19 23 23 N 1.36768 * 106.77728 * 0.41931 * 4 3 2 24 24 N 1.31109 * 125.56907 * 180.31403 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71390 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.70988 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.71618 * 1 2 3 28 28 H 1.08004 * 126.14009 * 359.97438 * 3 2 1 29 29 H 0.96998 * 119.99866 * 180.02562 * 7 6 5 30 30 H 1.08994 * 109.47097 * 300.00143 * 8 7 6 31 31 H 1.08999 * 109.47043 * 60.00451 * 8 7 6 32 32 H 0.97002 * 120.00126 * 179.97438 * 12 11 9 33 33 H 1.07999 * 120.19576 * 359.97438 * 18 17 6 34 34 H 1.08001 * 119.68675 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.66628 * 180.02562 * 20 19 18 36 36 H 1.07994 * 120.20673 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3155 1.1303 0.0000 4 6 3.6367 0.7045 0.0038 5 7 4.7912 1.3957 0.0075 6 6 5.9627 0.7973 0.0042 7 7 7.1280 1.5371 0.0087 8 6 7.0664 3.0008 0.0167 9 6 8.4649 3.5623 0.0209 10 1 9.3146 2.8956 0.0176 11 6 8.6597 4.9273 0.0281 12 7 7.6250 5.7391 0.0317 13 14 10.3931 5.6234 0.0326 14 1 11.3742 4.5086 0.0268 15 1 10.5923 6.4637 -1.1754 16 1 10.5909 6.4511 1.2496 17 6 6.0107 -0.6714 -0.0033 18 6 7.2204 -1.3664 -0.0076 19 6 7.2141 -2.7339 -0.0151 20 6 6.0168 -3.4353 -0.0177 21 6 4.8101 -2.7670 -0.0135 22 6 4.7954 -1.3790 -0.0060 23 7 3.6108 -0.6629 -0.0036 24 7 2.2697 -1.0664 -0.0058 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3634 0.8926 -0.5093 27 1 -0.3633 -0.8874 -0.5182 28 1 1.9766 2.1558 -0.0004 29 1 7.9877 1.0879 0.0058 30 1 6.5381 3.3470 -0.8716 31 1 6.5375 3.3373 0.9083 32 1 7.7620 6.6994 0.0371 33 1 8.1564 -0.8276 -0.0060 34 1 8.1499 -3.2731 -0.0180 35 1 6.0299 -4.5152 -0.0232 36 1 3.8826 -3.3202 -0.0152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746997508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:08 Heat of formation + Delta-G solvation = 123.290787 kcal Electronic energy + Delta-G solvation = -20837.351546 eV Core-core repulsion = 17708.799202 eV Total energy + Delta-G solvation = -3128.552344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71271 -39.26327 -37.18761 -34.92614 -33.34131 -32.35183 -31.14248 -30.63192 -28.54415 -27.61434 -26.84544 -24.02408 -22.94918 -22.51016 -21.56807 -19.56047 -18.88658 -17.94298 -17.27690 -15.94324 -15.67651 -15.65845 -15.03324 -14.87826 -14.38721 -14.07208 -13.80050 -13.36273 -13.15897 -13.13226 -12.82362 -12.52807 -12.44334 -12.14062 -12.09853 -11.58001 -11.53749 -10.98375 -10.96583 -10.59065 -10.33925 -10.10167 -9.56478 -9.48601 -9.07945 -9.03015 -8.54768 -7.89215 -7.02522 -6.25611 -4.33861 0.62875 0.84878 1.87427 2.43654 2.72098 3.18315 3.25122 3.27848 3.34163 3.53415 4.10729 4.25112 4.31238 4.36781 4.65017 4.80362 4.87458 5.10374 5.11080 5.29054 5.29141 5.49228 5.64677 5.65871 5.70803 5.86026 5.96577 6.07097 6.20772 6.24045 6.43626 6.52658 6.84905 7.06451 7.06555 7.39328 7.43041 7.67206 7.83768 7.96409 8.16391 8.58591 8.80423 9.32354 10.84181 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.004705 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.462823 B = 5949.853604 C = 7567.868691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.108 3.892 3 C -0.294 4.294 4 C 0.331 3.669 5 N -0.557 5.557 6 C 0.470 3.530 7 N -0.661 5.661 8 C 0.252 3.748 9 C -0.551 4.551 10 H 0.064 0.936 11 C 0.067 3.933 12 N -0.881 5.881 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.150 4.150 18 C -0.054 4.054 19 C -0.143 4.143 20 C -0.072 4.072 21 C -0.136 4.136 22 C 0.213 3.787 23 N -0.355 5.355 24 N -0.326 5.326 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.404 0.596 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.267 0.733 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 -15.860 -0.077 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.054 4.054 3 C -0.326 4.326 4 C 0.104 3.896 5 N -0.288 5.288 6 C 0.203 3.797 7 N -0.288 5.288 8 C 0.132 3.868 9 C -0.589 4.589 10 H 0.082 0.918 11 C -0.137 4.137 12 N -0.517 5.517 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.159 4.159 18 C -0.074 4.074 19 C -0.162 4.162 20 C -0.092 4.092 21 C -0.156 4.156 22 C 0.110 3.890 23 N -0.132 5.132 24 N -0.150 5.150 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.171 0.829 29 H 0.241 0.759 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.210 -15.829 -0.079 16.664 hybrid contribution 1.358 0.451 0.013 1.431 sum -3.852 -15.377 -0.067 15.853 Atomic orbital electron populations 1.20180 0.86364 1.03242 1.02946 1.22050 0.96696 0.90520 0.96151 1.20706 0.87828 0.99697 1.24385 1.20284 0.94008 0.79416 0.95926 1.67681 0.94390 1.34271 1.32434 1.19840 0.88125 0.85289 0.86454 1.45458 1.03027 1.09752 1.70557 1.19349 0.97828 0.70922 0.98652 1.21210 0.91413 0.92192 1.54068 0.91802 1.24916 0.97675 0.96666 0.94468 1.69977 1.29751 1.03734 1.48287 0.86349 0.83516 0.79124 0.77861 1.19624 1.20707 1.20701 1.19287 0.92849 0.93036 1.10687 1.20800 0.96206 0.94621 0.95818 1.20864 0.98601 0.93865 1.02825 1.21199 0.91448 1.00339 0.96170 1.20788 0.99740 0.91066 1.04006 1.17518 0.81897 0.92002 0.97565 1.46838 1.04421 1.06529 1.55396 1.77359 0.83228 1.21863 1.32541 0.90424 0.90174 0.91028 0.82904 0.75909 0.94588 0.94588 0.92330 0.84360 0.84887 0.84836 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.43 36.01 0.38 -0.38 16 2 C 0.11 1.76 7.16 -82.63 -0.59 1.17 16 3 C -0.29 -5.46 10.83 -39.10 -0.42 -5.89 16 4 C 0.33 6.92 7.88 -155.39 -1.22 5.70 16 5 N -0.56 -12.41 9.65 -10.03 -0.10 -12.51 16 6 C 0.47 9.37 7.71 -153.49 -1.18 8.19 16 7 N -0.66 -13.27 5.63 -59.72 -0.34 -13.60 16 8 C 0.25 6.32 5.46 -5.19 -0.03 6.29 16 9 C -0.55 -14.25 9.28 -34.44 -0.32 -14.57 16 10 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 11 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.88 -25.08 13.29 55.43 0.74 -24.35 16 13 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 C -0.15 -2.49 5.88 -104.99 -0.62 -3.11 16 18 C -0.05 -0.68 9.57 -39.64 -0.38 -1.06 16 19 C -0.14 -1.44 9.97 -39.93 -0.40 -1.83 16 20 C -0.07 -0.73 10.02 -39.50 -0.40 -1.13 16 21 C -0.14 -1.82 9.90 -39.48 -0.39 -2.21 16 22 C 0.21 3.63 6.67 -83.77 -0.56 3.07 16 23 N -0.36 -6.83 3.94 -10.07 -0.04 -6.87 16 24 N -0.33 -5.89 12.52 33.54 0.42 -5.47 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.15 2.61 8.06 -52.48 -0.42 2.19 16 29 H 0.40 6.83 6.65 -40.82 -0.27 6.56 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.14 1.45 6.63 -52.49 -0.35 1.10 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -32.13 314.24 -9.79 -41.92 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.96 Total: 5.02 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -6.23 Total: -4.05 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: 0.68 Total: -62.80 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.13 -9.79 -41.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746997508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.211 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds