Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46936 * 2 1 4 4 N 1.30344 * 126.35334 * 90.03024 * 3 2 1 5 5 N 1.28514 * 110.16003 * 179.97438 * 4 3 2 6 6 C 1.31322 * 109.92928 * 0.02562 * 5 4 3 7 7 S 1.76205 * 126.50146 * 180.02562 * 6 5 4 8 8 N 1.36875 * 106.99105 * 359.97438 * 6 5 4 9 9 N 1.40100 * 127.18823 * 180.02562 * 8 6 5 10 10 C 1.28010 * 119.99664 * 89.97712 * 9 8 6 11 11 C 1.50702 * 119.99667 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47061 * 239.99694 * 11 10 9 13 13 C 1.52998 * 109.47075 * 0.02562 * 11 10 9 14 14 C 1.53002 * 109.46904 * 120.00355 * 11 10 9 15 15 C 1.50702 * 109.46904 * 179.97438 * 14 11 10 16 16 H 1.07996 * 119.99867 * 359.97438 * 15 14 11 17 17 C 1.37882 * 119.99648 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00472 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99675 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47470 * 59.99865 * 19 17 15 21 21 H 1.48498 * 109.47252 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47120 * 299.99934 * 19 17 15 23 23 H 1.09005 * 109.46784 * 299.99606 * 1 2 3 24 24 H 1.08999 * 109.47461 * 59.99726 * 1 2 3 25 25 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46784 * 240.00394 * 2 1 3 27 27 H 1.08999 * 109.47461 * 120.00274 * 2 1 3 28 28 H 1.40998 * 100.00031 * 89.97347 * 7 6 5 29 29 H 1.08004 * 120.00352 * 359.97438 * 10 9 8 30 30 H 1.08998 * 109.46797 * 60.00353 * 12 11 10 31 31 H 1.09003 * 109.46849 * 180.02562 * 12 11 10 32 32 H 1.08995 * 109.47062 * 300.00503 * 12 11 10 33 33 H 1.08995 * 109.46914 * 60.00121 * 13 11 10 34 34 H 1.09003 * 109.46924 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.46876 * 299.99807 * 13 11 10 36 36 H 1.09008 * 109.47122 * 299.99626 * 14 11 10 37 37 H 1.08991 * 109.47646 * 59.99841 * 14 11 10 38 38 H 0.97000 * 120.00055 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2903 2.1491 1.0498 5 7 2.7020 3.3126 0.6914 6 6 2.7297 3.3935 -0.6191 7 16 3.2242 4.7903 -1.5727 8 7 2.3027 2.1867 -1.1035 9 7 2.1700 1.8125 -2.4471 10 6 3.1547 1.2723 -3.0612 11 6 3.0121 0.8703 -4.5066 12 6 3.2446 -0.6358 -4.6425 13 6 1.6041 1.2157 -4.9955 14 6 4.0432 1.6236 -5.3495 15 6 3.9011 1.2211 -6.7948 16 1 3.1507 0.5000 -7.0832 17 6 4.7291 1.7737 -7.7488 18 7 5.6432 2.6515 -7.3975 19 14 4.5525 1.2754 -9.5405 20 1 3.1855 1.6096 -10.0148 21 1 5.5533 2.0064 -10.3585 22 1 4.7786 -0.1863 -9.6723 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.6018 4.5206 -1.7057 29 1 4.0879 1.1053 -2.5438 30 1 2.5101 -1.1724 -4.0420 31 1 3.1420 -0.9264 -5.6880 32 1 4.2478 -0.8814 -4.2942 33 1 1.4390 2.2888 -4.8988 34 1 1.5011 0.9254 -6.0411 35 1 0.8693 0.6794 -4.3951 36 1 3.8776 2.6966 -5.2527 37 1 5.0464 1.3780 -5.0013 38 1 6.2260 3.0399 -8.0687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755508744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = 104.390932 kcal Electronic energy + Delta-G solvation = -20086.455776 eV Core-core repulsion = 17092.527824 eV Total energy + Delta-G solvation = -2993.927952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.89512 -38.24142 -35.69179 -34.27414 -32.69188 -31.14188 -29.73116 -27.33537 -26.73199 -25.13487 -24.21774 -23.15085 -22.29025 -20.60250 -18.71385 -18.16042 -17.26497 -16.51686 -16.26281 -15.10836 -14.96640 -14.81833 -14.23143 -14.17830 -13.56416 -13.29475 -12.82786 -12.40308 -12.26885 -12.11081 -11.82456 -11.76476 -11.54449 -11.35411 -11.30615 -11.16888 -11.01878 -10.86633 -10.83456 -10.54301 -10.45020 -10.19782 -9.63250 -9.46876 -9.26027 -9.23822 -8.53807 -8.35549 -6.18346 -4.21247 0.96216 1.32273 1.57667 1.96311 2.35598 2.79965 3.22629 3.28798 3.29853 3.95377 4.30560 4.50702 4.59796 4.96158 4.99367 5.18182 5.21117 5.22962 5.37397 5.48883 5.57739 5.59142 5.70152 5.82314 5.93973 5.95626 6.06198 6.18824 6.32950 6.49325 6.70036 6.74612 6.93076 7.31927 7.40661 7.63657 7.77598 8.14344 8.46447 8.81548 9.43385 10.92981 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.004629 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.623854 B = 6047.344769 C = 7004.842988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C 0.198 3.802 4 N -0.290 5.290 5 N -0.240 5.240 6 C 0.145 3.855 7 S -0.001 6.001 8 N -0.327 5.327 9 N -0.266 5.266 10 C 0.189 3.811 11 C -0.023 4.023 12 C -0.125 4.125 13 C -0.123 4.123 14 C 0.040 3.960 15 C -0.516 4.516 16 H 0.064 0.936 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 -5.040 9.666 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C -0.071 4.071 4 N -0.134 5.134 5 N -0.087 5.087 6 C -0.230 4.230 7 S 0.148 5.852 8 N -0.103 5.103 9 N -0.066 5.066 10 C -0.022 4.022 11 C -0.026 4.026 12 C -0.183 4.183 13 C -0.180 4.180 14 C 0.002 3.998 15 C -0.554 4.554 16 H 0.082 0.918 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.125 0.875 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.568 -3.389 10.561 12.890 hybrid contribution 1.436 -1.564 -1.572 2.642 sum -5.132 -4.953 8.989 11.475 Atomic orbital electron populations 1.21721 0.92964 1.02656 1.03044 1.20028 0.97348 0.85759 1.04345 1.25367 1.02408 0.97487 0.81828 1.74108 1.16975 0.99029 1.23301 1.74772 1.14806 1.12081 1.07001 1.26113 1.10240 0.92316 0.94377 1.87157 1.11913 1.20721 1.65398 1.48571 1.46087 1.10585 1.05056 1.75684 1.25156 1.18635 0.87088 1.27872 0.93449 0.82622 0.98265 1.20187 1.00507 0.97371 0.84534 1.21757 1.00387 0.92494 1.03709 1.21671 0.93101 1.01671 1.01557 1.19185 0.91631 0.95169 0.93864 1.21015 1.18084 1.25134 0.91182 0.91829 1.24986 0.95161 0.94918 0.99093 1.69932 1.20333 1.28663 1.34238 0.86639 0.78004 0.78667 0.84634 1.20078 1.21314 1.20167 0.91802 0.92018 0.91172 0.90119 0.88081 0.93255 0.87489 0.94208 0.89684 0.92823 0.92463 0.90931 0.94106 0.95757 0.96157 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.16 0.37 -1.05 16 2 C -0.03 -0.38 6.50 -27.88 -0.18 -0.56 16 3 C 0.20 2.99 7.46 -153.71 -1.15 1.84 16 4 N -0.29 -4.96 12.17 33.05 0.40 -4.56 16 5 N -0.24 -4.34 12.23 30.75 0.38 -3.96 16 6 C 0.14 2.46 8.53 -87.99 -0.75 1.71 16 7 S 0.00 -0.02 26.26 -107.50 -2.82 -2.85 16 8 N -0.33 -5.33 3.45 -9.77 -0.03 -5.37 16 9 N -0.27 -4.24 10.14 32.67 0.33 -3.91 16 10 C 0.19 2.91 9.63 -13.87 -0.13 2.78 16 11 C -0.02 -0.38 0.75 -155.66 -0.12 -0.50 16 12 C -0.13 -1.85 8.20 37.16 0.30 -1.54 16 13 C -0.12 -2.03 7.45 37.16 0.28 -1.75 16 14 C 0.04 0.86 4.02 -27.88 -0.11 0.75 16 15 C -0.52 -12.42 7.65 -34.44 -0.26 -12.68 16 16 H 0.06 1.45 5.68 -52.49 -0.30 1.16 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 19 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.41 9.55 96.90 0.93 2.34 16 29 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.35 6.61 -51.93 -0.34 1.01 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 34 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 35 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -28.36 338.18 -7.05 -35.41 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.26 Total: -1.32 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -1.85 Total: -9.55 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.81 Total: -41.59 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.82 Total: -2.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.36 -7.05 -35.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755508744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.798 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds