Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46936 * 2 1 4 4 N 1.30344 * 126.35334 * 90.03024 * 3 2 1 5 5 N 1.28514 * 110.16003 * 179.97438 * 4 3 2 6 6 C 1.31322 * 109.92928 * 0.02562 * 5 4 3 7 7 S 1.76205 * 126.50146 * 180.02562 * 6 5 4 8 8 N 1.36875 * 106.99105 * 359.97438 * 6 5 4 9 9 N 1.40100 * 127.18823 * 180.02562 * 8 6 5 10 10 C 1.28010 * 119.99664 * 89.97712 * 9 8 6 11 11 C 1.50702 * 119.99667 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47061 * 239.99694 * 11 10 9 13 13 C 1.52998 * 109.47075 * 0.02562 * 11 10 9 14 14 C 1.53002 * 109.46904 * 120.00355 * 11 10 9 15 15 C 1.50702 * 109.46904 * 179.97438 * 14 11 10 16 16 H 1.07996 * 119.99867 * 359.97438 * 15 14 11 17 17 C 1.37882 * 119.99648 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00472 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99675 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47470 * 59.99865 * 19 17 15 21 21 H 1.48498 * 109.47252 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47120 * 299.99934 * 19 17 15 23 23 H 1.09005 * 109.46784 * 299.99606 * 1 2 3 24 24 H 1.08999 * 109.47461 * 59.99726 * 1 2 3 25 25 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46784 * 240.00394 * 2 1 3 27 27 H 1.08999 * 109.47461 * 120.00274 * 2 1 3 28 28 H 1.40998 * 100.00031 * 89.97347 * 7 6 5 29 29 H 1.08004 * 120.00352 * 359.97438 * 10 9 8 30 30 H 1.08998 * 109.46797 * 60.00353 * 12 11 10 31 31 H 1.09003 * 109.46849 * 180.02562 * 12 11 10 32 32 H 1.08995 * 109.47062 * 300.00503 * 12 11 10 33 33 H 1.08995 * 109.46914 * 60.00121 * 13 11 10 34 34 H 1.09003 * 109.46924 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.46876 * 299.99807 * 13 11 10 36 36 H 1.09008 * 109.47122 * 299.99626 * 14 11 10 37 37 H 1.08991 * 109.47646 * 59.99841 * 14 11 10 38 38 H 0.97000 * 120.00055 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2903 2.1491 1.0498 5 7 2.7020 3.3126 0.6914 6 6 2.7297 3.3935 -0.6191 7 16 3.2242 4.7903 -1.5727 8 7 2.3027 2.1867 -1.1035 9 7 2.1700 1.8125 -2.4471 10 6 3.1547 1.2723 -3.0612 11 6 3.0121 0.8703 -4.5066 12 6 3.2446 -0.6358 -4.6425 13 6 1.6041 1.2157 -4.9955 14 6 4.0432 1.6236 -5.3495 15 6 3.9011 1.2211 -6.7948 16 1 3.1507 0.5000 -7.0832 17 6 4.7291 1.7737 -7.7488 18 7 5.6432 2.6515 -7.3975 19 14 4.5525 1.2754 -9.5405 20 1 3.1855 1.6096 -10.0148 21 1 5.5533 2.0064 -10.3585 22 1 4.7786 -0.1863 -9.6723 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.6018 4.5206 -1.7057 29 1 4.0879 1.1053 -2.5438 30 1 2.5101 -1.1724 -4.0420 31 1 3.1420 -0.9264 -5.6880 32 1 4.2478 -0.8814 -4.2942 33 1 1.4390 2.2888 -4.8988 34 1 1.5011 0.9254 -6.0411 35 1 0.8693 0.6794 -4.3951 36 1 3.8776 2.6966 -5.2527 37 1 5.0464 1.3780 -5.0013 38 1 6.2260 3.0399 -8.0687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755508744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = 90.247147 kcal Electronic energy + Delta-G solvation = -20087.069096 eV Core-core repulsion = 17092.527824 eV Total energy + Delta-G solvation = -2994.541272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.14277 -39.59239 -37.06770 -35.23036 -34.50019 -32.49515 -30.86783 -29.06990 -28.01325 -26.42400 -25.42493 -24.55075 -23.63479 -21.80769 -20.05028 -19.42196 -18.51479 -18.30398 -17.56654 -16.57471 -16.22879 -16.00256 -15.67686 -15.10998 -15.00901 -14.71368 -14.05420 -13.71457 -13.65266 -13.29709 -13.13005 -12.93889 -12.75766 -12.71201 -12.67271 -12.50467 -12.33507 -12.30175 -12.20125 -12.09183 -11.79405 -11.63702 -11.09702 -11.03977 -10.84293 -10.49404 -10.46731 -9.57067 -8.14328 -6.21021 -0.25555 0.08778 0.31732 0.72761 1.16060 1.47793 1.48806 1.55210 1.55836 2.46200 2.88979 3.22479 3.32125 3.48644 3.90676 3.95217 4.13997 4.18821 4.21806 4.33436 4.36445 4.46191 4.64017 4.86455 4.90612 4.97205 5.00374 5.08577 5.12868 5.25709 5.32464 5.46524 5.49273 5.50555 5.69100 5.86958 6.24886 6.39846 6.91918 7.20176 7.47193 8.97566 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.004629 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.623854 B = 6047.344769 C = 7004.842988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.036 4.036 3 C 0.207 3.793 4 N -0.313 5.313 5 N -0.262 5.262 6 C 0.133 3.867 7 S -0.004 6.004 8 N -0.334 5.334 9 N -0.266 5.266 10 C 0.194 3.806 11 C -0.014 4.014 12 C -0.122 4.122 13 C -0.117 4.117 14 C 0.045 3.955 15 C -0.513 4.513 16 H 0.077 0.923 17 C 0.004 3.996 18 N -0.935 5.935 19 Si 0.952 3.048 20 H -0.269 1.269 21 H -0.295 1.295 22 H -0.264 1.264 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.064 0.936 36 H -0.008 1.008 37 H 0.002 0.998 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 -7.238 9.720 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.062 4.062 4 N -0.157 5.157 5 N -0.107 5.107 6 C -0.243 4.243 7 S 0.145 5.855 8 N -0.110 5.110 9 N -0.066 5.066 10 C -0.017 4.017 11 C -0.017 4.017 12 C -0.180 4.180 13 C -0.174 4.174 14 C 0.007 3.993 15 C -0.551 4.551 16 H 0.095 0.905 17 C -0.194 4.194 18 N -0.576 5.576 19 Si 0.778 3.222 20 H -0.194 1.194 21 H -0.221 1.221 22 H -0.189 1.189 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.010 0.990 37 H 0.020 0.980 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.703 -5.605 10.629 14.274 hybrid contribution 1.762 -0.876 -1.533 2.494 sum -5.941 -6.481 9.097 12.651 Atomic orbital electron populations 1.21698 0.91965 1.04239 1.01920 1.20339 0.98026 0.83248 1.05992 1.26209 1.00504 0.98604 0.80870 1.74057 1.18152 0.99162 1.24287 1.74713 1.15553 1.12874 1.07599 1.26323 1.10553 0.93028 0.94395 1.87109 1.12929 1.20527 1.64944 1.48646 1.46470 1.10631 1.05302 1.75656 1.25513 1.18294 0.87102 1.27692 0.93970 0.82436 0.97620 1.19939 0.98942 0.98325 0.84514 1.21726 1.01806 0.90755 1.03701 1.21601 0.93475 1.00820 1.01502 1.18995 0.92324 0.93862 0.94131 1.21470 1.17241 1.24186 0.92205 0.90482 1.25804 0.95223 0.95200 1.03162 1.70072 1.21740 1.30512 1.35252 0.85684 0.77800 0.78703 0.79992 1.19431 1.22115 1.18921 0.92481 0.93563 0.88224 0.88831 0.85989 0.91976 0.86285 0.90940 0.90788 0.92367 0.94224 0.91750 0.91686 0.98969 0.97991 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.89 71.98 0.71 -1.62 16 2 C -0.04 -0.68 6.50 29.85 0.19 -0.49 16 3 C 0.21 5.91 7.46 137.53 1.03 6.93 16 4 N -0.31 -10.45 12.17 -49.35 -0.60 -11.05 16 5 N -0.26 -9.38 12.23 -56.62 -0.69 -10.07 16 6 C 0.13 4.47 8.53 179.43 1.53 6.00 16 7 S 0.00 -0.13 26.26 -56.49 -1.48 -1.62 16 8 N -0.33 -10.49 3.45 -184.83 -0.64 -11.12 16 9 N -0.27 -8.05 10.14 -50.46 -0.51 -8.56 16 10 C 0.19 5.65 9.63 88.67 0.85 6.51 16 11 C -0.01 -0.45 0.75 -52.93 -0.04 -0.49 16 12 C -0.12 -3.25 8.20 71.98 0.59 -2.66 16 13 C -0.12 -3.66 7.45 71.98 0.54 -3.12 16 14 C 0.05 1.98 4.02 29.85 0.12 2.10 16 15 C -0.51 -24.48 7.65 25.60 0.20 -24.28 16 16 H 0.08 3.41 5.68 -2.91 -0.02 3.39 16 17 C 0.00 0.20 5.46 84.66 0.46 0.66 16 18 N -0.93 -52.42 13.29 21.45 0.28 -52.13 16 19 Si 0.95 40.40 29.54 68.60 2.03 42.43 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.12 3.16 9.55 73.80 0.70 3.86 16 29 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 2.16 6.61 -2.39 -0.02 2.14 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.36 8.06 -2.39 -0.02 1.34 16 34 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 35 H 0.06 1.72 8.06 -2.39 -0.02 1.70 16 36 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 37 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -61.44 338.18 6.34 -55.10 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.77 Total: 7.50 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 6.18 Total: -10.47 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -2.16 Total: -92.94 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.48 Total: -1.62 kcal Total: -61.44 6.34 -55.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755508744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.346 kcal (2) G-P(sol) polarization free energy of solvation -61.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds