Wall clock time and date at job start Tue Mar 31 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46608 * 2 1 4 4 C 1.52999 * 109.47032 * 65.18075 * 3 2 1 5 5 C 1.52998 * 109.47184 * 305.17468 * 3 2 1 6 6 N 1.46504 * 109.46759 * 185.17789 * 3 2 1 7 7 C 1.34775 * 119.99823 * 297.88622 * 6 3 2 8 8 S 1.71200 * 120.00346 * 4.93485 * 7 6 3 9 9 N 1.34784 * 119.99702 * 184.93801 * 7 6 3 10 10 C 1.40604 * 119.99724 * 184.52736 * 9 7 6 11 11 C 1.40658 * 126.08194 * 321.68584 * 10 9 7 12 12 N 1.30913 * 108.39038 * 179.81851 * 11 10 9 13 13 N 1.40070 * 108.40297 * 0.44456 * 12 11 10 14 14 C 1.37323 * 126.06906 * 179.69405 * 13 12 11 15 15 H 1.07997 * 120.00261 * 185.42419 * 14 13 12 16 16 C 1.38979 * 120.00087 * 5.42283 * 14 13 12 17 17 N 1.31306 * 120.00082 * 5.40800 * 16 14 13 18 18 Si 1.86793 * 120.00225 * 185.40671 * 16 14 13 19 19 H 1.48501 * 109.46985 * 94.99646 * 18 16 14 20 20 H 1.48500 * 109.47495 * 214.99188 * 18 16 14 21 21 H 1.48500 * 109.47346 * 335.00005 * 18 16 14 22 22 C 1.35668 * 126.08166 * 141.99965 * 10 9 7 23 23 H 1.08996 * 109.47185 * 60.00408 * 1 2 3 24 24 H 1.09002 * 109.46619 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47442 * 299.99871 * 1 2 3 26 26 H 1.08999 * 109.47442 * 240.00129 * 2 1 3 27 27 H 1.08996 * 109.47185 * 119.99592 * 2 1 3 28 28 H 1.09007 * 109.47003 * 183.73728 * 4 3 2 29 29 H 1.09000 * 109.47415 * 303.73223 * 4 3 2 30 30 H 1.09002 * 109.47489 * 63.74240 * 4 3 2 31 31 H 1.08994 * 109.47381 * 296.74793 * 5 3 2 32 32 H 1.09006 * 109.46772 * 56.75333 * 5 3 2 33 33 H 1.08998 * 109.47004 * 176.74727 * 5 3 2 34 34 H 0.96998 * 119.99989 * 118.16477 * 6 3 2 35 35 H 0.96995 * 120.00179 * 4.52276 * 9 7 6 36 36 H 1.07998 * 125.80210 * 359.97438 * 11 10 9 37 37 H 0.96997 * 120.00479 * 180.02562 * 17 16 14 38 38 H 1.08004 * 126.24679 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6390 2.1252 1.3093 5 6 1.4264 2.2003 -1.1791 6 7 3.4996 1.4445 -0.1247 7 6 4.2581 0.8687 0.8290 8 16 3.5152 0.0255 2.1206 9 7 5.6016 0.9567 0.7660 10 6 6.3955 0.2768 1.7064 11 6 6.1103 0.1240 3.0753 12 7 7.0761 -0.5692 3.6235 13 7 8.0175 -0.8763 2.6328 14 6 9.1786 -1.5870 2.8132 15 1 9.8790 -1.6930 1.9981 16 6 9.4523 -2.1698 4.0448 17 7 8.5552 -2.1322 5.0029 18 14 11.0965 -3.0066 4.3374 19 1 12.0316 -2.0492 4.9811 20 1 10.9031 -4.1817 5.2245 21 1 11.6622 -3.4540 3.0393 22 6 7.5759 -0.3434 1.4561 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.9439 3.1714 1.2818 29 1 0.5578 2.0651 1.4341 30 1 2.1296 1.6256 2.1446 31 1 1.7588 1.7488 -2.1137 32 1 0.3393 2.1496 -1.1174 33 1 1.7439 3.2425 -1.1459 34 1 3.9203 1.8637 -0.8915 35 1 6.0207 1.4891 0.0719 36 1 5.2410 0.5104 3.5865 37 1 8.7463 -2.5386 5.8626 38 1 8.0750 -0.4047 0.5002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774174686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:34 Heat of formation + Delta-G solvation = 104.725831 kcal Electronic energy + Delta-G solvation = -19964.548857 eV Core-core repulsion = 16970.635428 eV Total energy + Delta-G solvation = -2993.913429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84038 -39.16357 -36.51016 -33.59993 -32.56530 -30.28656 -29.64592 -27.67513 -27.50551 -24.94938 -23.99842 -23.42895 -20.82100 -20.05773 -19.11100 -18.22333 -17.39564 -16.50983 -15.53653 -15.13050 -14.84094 -14.62027 -14.34784 -13.90047 -13.77901 -13.20395 -13.00215 -12.83345 -12.39322 -12.05296 -11.88536 -11.71445 -11.55592 -11.36195 -11.27054 -11.22532 -10.94585 -10.77936 -10.59753 -10.52468 -10.30979 -9.61699 -9.17875 -8.73366 -8.10680 -7.27452 -6.78135 -6.59019 -6.13505 -4.25074 1.84293 2.49283 2.94921 3.02178 3.07899 3.10509 3.55447 3.77113 3.98833 4.36477 4.75368 4.84553 4.87652 5.00297 5.07733 5.33707 5.45497 5.61963 5.67480 5.74184 5.80405 5.97878 6.07319 6.19239 6.21541 6.32203 6.41409 6.53034 6.72624 6.83169 6.91635 6.96984 7.16105 7.27019 7.46401 7.84553 7.88613 8.25223 8.67115 9.33226 9.64098 10.37389 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.043360 B = 0.003741 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.604008 B = 7483.012725 C = 7714.719931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.162 4.162 3 C 0.190 3.810 4 C -0.189 4.189 5 C -0.158 4.158 6 N -0.694 5.694 7 C 0.550 3.450 8 S -0.629 6.629 9 N -0.568 5.568 10 C -0.091 4.091 11 C 0.030 3.970 12 N -0.267 5.267 13 N -0.139 5.139 14 C -0.326 4.326 15 H 0.116 0.884 16 C 0.049 3.951 17 N -0.764 5.764 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.264 1.264 22 C -0.062 4.062 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.133 0.867 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.389 0.611 35 H 0.391 0.609 36 H 0.179 0.821 37 H 0.276 0.724 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 7.696 -11.753 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.202 4.202 3 C 0.105 3.895 4 C -0.249 4.249 5 C -0.216 4.216 6 N -0.326 5.326 7 C 0.189 3.811 8 S -0.498 6.498 9 N -0.186 5.186 10 C -0.198 4.198 11 C -0.150 4.150 12 N -0.095 5.095 13 N 0.097 4.903 14 C -0.458 4.458 15 H 0.134 0.866 16 C -0.169 4.169 17 N -0.390 5.390 18 Si 0.758 3.242 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.188 1.188 22 C -0.216 4.216 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.225 0.775 35 H 0.227 0.773 36 H 0.196 0.804 37 H 0.087 0.913 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.683 6.446 -9.433 14.350 hybrid contribution 1.148 0.941 -2.399 2.821 sum -7.535 7.387 -11.832 15.854 Atomic orbital electron populations 1.21842 0.95972 1.01414 1.01114 1.22631 0.95491 0.95635 1.06416 1.20377 0.75882 0.97054 0.96223 1.22770 1.02356 0.99516 1.00232 1.22189 1.02397 0.99806 0.97212 1.45017 1.07505 1.57973 1.22115 1.22142 0.84146 0.84831 0.89934 1.92826 1.71862 1.54656 1.30482 1.41484 1.02112 1.45205 1.29781 1.16872 0.96906 1.16648 0.89384 1.24217 0.98807 1.00760 0.91173 1.78319 0.99624 1.20140 1.11414 1.44601 1.13381 1.28686 1.03618 1.19886 0.95072 1.30882 0.99926 0.86616 1.25637 0.99405 0.96638 0.95212 1.70200 1.31989 1.33528 1.03264 0.85814 0.80310 0.78841 0.79207 1.19598 1.20021 1.18804 1.21307 0.99103 1.09093 0.92101 0.93580 0.92925 0.92350 0.93187 0.84999 0.93944 0.91782 0.86359 0.92338 0.90031 0.92390 0.77544 0.77329 0.80433 0.91301 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.18 37.16 0.34 -1.21 16 2 C -0.16 -2.13 4.82 -26.73 -0.13 -2.26 16 3 C 0.19 2.21 0.83 -131.82 -0.11 2.10 16 4 C -0.19 -2.43 8.19 37.16 0.30 -2.12 16 5 C -0.16 -1.32 8.20 37.16 0.30 -1.02 16 6 N -0.69 -8.51 5.11 -49.30 -0.25 -8.76 16 7 C 0.55 9.19 7.45 -86.91 -0.65 8.55 16 8 S -0.63 -13.07 19.18 -107.50 -2.06 -15.13 16 9 N -0.57 -9.56 5.47 -11.53 -0.06 -9.63 16 10 C -0.09 -2.02 6.41 -83.84 -0.54 -2.55 16 11 C 0.03 0.76 10.04 -17.03 -0.17 0.59 16 12 N -0.27 -7.60 10.45 30.80 0.32 -7.28 16 13 N -0.14 -3.74 3.73 -11.41 -0.04 -3.78 16 14 C -0.33 -8.51 10.24 -14.82 -0.15 -8.66 16 15 H 0.12 2.70 7.84 -52.49 -0.41 2.29 16 16 C 0.05 1.26 5.49 -17.50 -0.10 1.16 16 17 N -0.76 -21.21 11.88 55.49 0.66 -20.55 16 18 Si 0.93 18.77 29.55 -169.99 -5.02 13.74 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 C -0.06 -1.43 11.49 -16.39 -0.19 -1.62 16 23 H 0.05 0.41 6.27 -51.93 -0.33 0.08 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.62 6.49 -51.93 -0.34 0.28 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.13 2.23 4.67 -29.93 -0.14 2.09 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.73 6.40 -51.93 -0.33 0.39 16 30 H 0.12 1.93 4.64 -30.57 -0.14 1.79 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.62 6.15 -51.93 -0.32 0.30 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.39 3.54 8.50 -40.82 -0.35 3.19 16 35 H 0.39 5.00 8.85 -40.82 -0.36 4.64 16 36 H 0.18 4.46 6.21 -47.65 -0.30 4.16 16 37 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.14 2.77 8.06 -52.48 -0.42 2.35 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -32.18 312.14 -7.52 -39.70 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -4.68 Total: 14.02 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.08 Total: -7.05 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.62 Total: -49.99 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 16 Polarization: -13.07 SS G_CDS: -2.06 Total: -15.13 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.18 -7.52 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774174686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.425 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds