Wall clock time and date at job start Tue Mar 31 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46608 * 2 1 4 4 C 1.52999 * 109.47032 * 65.18075 * 3 2 1 5 5 C 1.52998 * 109.47184 * 305.17468 * 3 2 1 6 6 N 1.46504 * 109.46759 * 185.17789 * 3 2 1 7 7 C 1.34775 * 119.99823 * 297.88622 * 6 3 2 8 8 S 1.71200 * 120.00346 * 4.93485 * 7 6 3 9 9 N 1.34784 * 119.99702 * 184.93801 * 7 6 3 10 10 C 1.40604 * 119.99724 * 184.52736 * 9 7 6 11 11 C 1.40658 * 126.08194 * 321.68584 * 10 9 7 12 12 N 1.30913 * 108.39038 * 179.81851 * 11 10 9 13 13 N 1.40070 * 108.40297 * 0.44456 * 12 11 10 14 14 C 1.37323 * 126.06906 * 179.69405 * 13 12 11 15 15 H 1.07997 * 120.00261 * 185.42419 * 14 13 12 16 16 C 1.38979 * 120.00087 * 5.42283 * 14 13 12 17 17 N 1.31306 * 120.00082 * 5.40800 * 16 14 13 18 18 Si 1.86793 * 120.00225 * 185.40671 * 16 14 13 19 19 H 1.48501 * 109.46985 * 94.99646 * 18 16 14 20 20 H 1.48500 * 109.47495 * 214.99188 * 18 16 14 21 21 H 1.48500 * 109.47346 * 335.00005 * 18 16 14 22 22 C 1.35668 * 126.08166 * 141.99965 * 10 9 7 23 23 H 1.08996 * 109.47185 * 60.00408 * 1 2 3 24 24 H 1.09002 * 109.46619 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47442 * 299.99871 * 1 2 3 26 26 H 1.08999 * 109.47442 * 240.00129 * 2 1 3 27 27 H 1.08996 * 109.47185 * 119.99592 * 2 1 3 28 28 H 1.09007 * 109.47003 * 183.73728 * 4 3 2 29 29 H 1.09000 * 109.47415 * 303.73223 * 4 3 2 30 30 H 1.09002 * 109.47489 * 63.74240 * 4 3 2 31 31 H 1.08994 * 109.47381 * 296.74793 * 5 3 2 32 32 H 1.09006 * 109.46772 * 56.75333 * 5 3 2 33 33 H 1.08998 * 109.47004 * 176.74727 * 5 3 2 34 34 H 0.96998 * 119.99989 * 118.16477 * 6 3 2 35 35 H 0.96995 * 120.00179 * 4.52276 * 9 7 6 36 36 H 1.07998 * 125.80210 * 359.97438 * 11 10 9 37 37 H 0.96997 * 120.00479 * 180.02562 * 17 16 14 38 38 H 1.08004 * 126.24679 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6390 2.1252 1.3093 5 6 1.4264 2.2003 -1.1791 6 7 3.4996 1.4445 -0.1247 7 6 4.2581 0.8687 0.8290 8 16 3.5152 0.0255 2.1206 9 7 5.6016 0.9567 0.7660 10 6 6.3955 0.2768 1.7064 11 6 6.1103 0.1240 3.0753 12 7 7.0761 -0.5692 3.6235 13 7 8.0175 -0.8763 2.6328 14 6 9.1786 -1.5870 2.8132 15 1 9.8790 -1.6930 1.9981 16 6 9.4523 -2.1698 4.0448 17 7 8.5552 -2.1322 5.0029 18 14 11.0965 -3.0066 4.3374 19 1 12.0316 -2.0492 4.9811 20 1 10.9031 -4.1817 5.2245 21 1 11.6622 -3.4540 3.0393 22 6 7.5759 -0.3434 1.4561 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.9439 3.1714 1.2818 29 1 0.5578 2.0651 1.4341 30 1 2.1296 1.6256 2.1446 31 1 1.7588 1.7488 -2.1137 32 1 0.3393 2.1496 -1.1174 33 1 1.7439 3.2425 -1.1459 34 1 3.9203 1.8637 -0.8915 35 1 6.0207 1.4891 0.0719 36 1 5.2410 0.5104 3.5865 37 1 8.7463 -2.5386 5.8626 38 1 8.0750 -0.4047 0.5002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774174686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:34 Heat of formation + Delta-G solvation = 83.000442 kcal Electronic energy + Delta-G solvation = -19965.490941 eV Core-core repulsion = 16970.635428 eV Total energy + Delta-G solvation = -2994.855513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59080 -40.44611 -37.88288 -35.37094 -33.89245 -32.19838 -30.69104 -29.37635 -28.40312 -26.79452 -25.09066 -24.77120 -22.59899 -21.76386 -20.35354 -19.79766 -18.94780 -17.88851 -17.37562 -16.53033 -16.26910 -15.77292 -15.56218 -15.41832 -15.11217 -14.92934 -14.65159 -13.76356 -13.55091 -13.44904 -13.22056 -12.89895 -12.87296 -12.75785 -12.67284 -12.41614 -12.16089 -12.11343 -12.06122 -11.77127 -11.45936 -11.23593 -10.84974 -10.42471 -10.06305 -8.91781 -8.46913 -8.43615 -7.73929 -6.21391 0.41789 1.08731 1.32710 1.40890 1.57975 1.63757 1.82658 2.15841 2.47346 2.65513 3.03875 3.11610 3.88908 3.98744 4.17553 4.43364 4.49250 4.55381 4.69215 4.74514 4.82350 4.85839 4.95612 5.03155 5.05468 5.11489 5.15988 5.31087 5.33071 5.36215 5.52671 5.64712 5.77482 5.84673 5.99045 6.11896 6.39630 6.61840 6.80686 7.46645 7.70899 8.53956 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.043360 B = 0.003741 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.604008 B = 7483.012725 C = 7714.719931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.161 4.161 3 C 0.186 3.814 4 C -0.187 4.187 5 C -0.150 4.150 6 N -0.662 5.662 7 C 0.573 3.427 8 S -0.709 6.709 9 N -0.561 5.561 10 C -0.072 4.072 11 C 0.013 3.987 12 N -0.318 5.318 13 N -0.168 5.168 14 C -0.358 4.358 15 H 0.139 0.861 16 C -0.003 4.003 17 N -0.822 5.822 18 Si 1.017 2.983 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.243 1.243 22 C -0.055 4.055 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.417 0.583 36 H 0.171 0.829 37 H 0.276 0.724 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 9.027 -15.306 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.202 4.202 3 C 0.101 3.899 4 C -0.247 4.247 5 C -0.208 4.208 6 N -0.294 5.294 7 C 0.209 3.791 8 S -0.580 6.580 9 N -0.183 5.183 10 C -0.179 4.179 11 C -0.167 4.167 12 N -0.146 5.146 13 N 0.066 4.934 14 C -0.488 4.488 15 H 0.157 0.843 16 C -0.215 4.215 17 N -0.450 5.450 18 Si 0.836 3.164 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.166 1.166 22 C -0.209 4.209 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.257 0.743 36 H 0.188 0.812 37 H 0.086 0.914 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.578 7.830 -13.080 17.492 hybrid contribution 0.881 0.656 -1.460 1.828 sum -7.697 8.487 -14.540 18.512 Atomic orbital electron populations 1.21800 0.94031 1.01677 1.02306 1.22472 0.97299 0.96143 1.04243 1.20596 0.75039 0.96693 0.97537 1.22661 1.02973 0.99581 0.99454 1.22156 1.02891 1.00086 0.95649 1.45052 1.07861 1.55379 1.21139 1.21654 0.84000 0.84007 0.89433 1.93169 1.72993 1.57853 1.34017 1.41120 1.01738 1.45666 1.29786 1.16786 0.96784 1.15369 0.88958 1.24253 0.98251 1.01170 0.92982 1.78209 1.01039 1.21728 1.13673 1.44837 1.13886 1.30321 1.04335 1.20576 0.95584 1.31437 1.01220 0.84323 1.26829 1.03327 0.96805 0.94518 1.70381 1.34784 1.35808 1.04007 0.84608 0.74864 0.77249 0.79667 1.19122 1.20278 1.16643 1.22027 0.99115 1.07107 0.92607 0.90848 0.93285 0.92560 0.93358 0.88909 0.92994 0.90432 0.89935 0.90882 0.88739 0.90833 0.74760 0.74298 0.81199 0.91399 0.79947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 2 C -0.16 -4.02 4.82 30.60 0.15 -3.87 16 3 C 0.19 3.81 0.83 3.60 0.00 3.82 16 4 C -0.19 -4.51 8.19 71.98 0.59 -3.92 16 5 C -0.15 -1.79 8.20 71.98 0.59 -1.20 16 6 N -0.66 -14.24 5.11 -309.88 -1.58 -15.83 16 7 C 0.57 18.38 7.45 179.05 1.33 19.72 16 8 S -0.71 -30.52 19.18 -56.49 -1.08 -31.60 16 9 N -0.56 -17.76 5.47 -190.40 -1.04 -18.80 16 10 C -0.07 -3.13 6.41 37.73 0.24 -2.89 16 11 C 0.01 0.69 10.04 85.42 0.86 1.54 16 12 N -0.32 -18.90 10.45 -56.46 -0.59 -19.49 16 13 N -0.17 -9.20 3.73 -190.01 -0.71 -9.91 16 14 C -0.36 -18.85 10.24 84.01 0.86 -17.99 16 15 H 0.14 6.34 7.84 -2.91 -0.02 6.32 16 16 C 0.00 -0.14 5.49 84.95 0.47 0.32 16 17 N -0.82 -47.79 11.88 21.66 0.26 -47.53 16 18 Si 1.02 38.78 29.55 68.60 2.03 40.81 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.24 -8.36 7.11 99.48 0.71 -7.65 16 22 C -0.06 -2.50 11.49 83.37 0.96 -1.54 16 23 H 0.07 1.02 6.27 -2.39 -0.01 1.01 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.11 6.49 -2.39 -0.02 1.09 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 3.19 4.67 -16.38 -0.08 3.11 16 28 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 1.63 6.40 -2.39 -0.02 1.61 16 30 H 0.08 2.72 4.64 -15.97 -0.07 2.65 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.96 6.15 -2.38 -0.01 0.95 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.41 5.57 8.50 -92.71 -0.79 4.78 16 35 H 0.42 9.14 8.85 -92.71 -0.82 8.32 16 36 H 0.17 9.07 6.21 -5.99 -0.04 9.03 16 37 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.18 6.52 8.06 -2.91 -0.02 6.49 16 Total: -1.00 -76.36 312.14 3.34 -73.03 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.65 Total: 37.41 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 6.71 Total: -8.08 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -3.67 Total: -111.56 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: -30.52 SS G_CDS: -1.08 Total: -31.60 kcal Total: -76.36 3.34 -73.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774174686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.026 kcal (2) G-P(sol) polarization free energy of solvation -76.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds