Wall clock time and date at job start Tue Mar 31 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35954 * 117.00434 * 2 1 4 4 C 1.38764 * 120.02545 * 359.97438 * 3 2 1 5 5 C 1.38186 * 120.09904 * 179.97438 * 4 3 2 6 6 C 1.38189 * 120.15140 * 0.02562 * 5 4 3 7 7 C 1.38839 * 120.05366 * 359.97438 * 6 5 4 8 8 N 1.40086 * 120.04453 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00152 * 34.66494 * 8 7 6 10 10 O 1.21586 * 119.99822 * 355.52979 * 9 8 7 11 11 N 1.34777 * 119.99965 * 175.52895 * 9 8 7 12 12 C 1.46493 * 119.99659 * 179.72207 * 11 9 8 13 13 H 1.09005 * 109.47832 * 325.27903 * 12 11 9 14 14 C 1.52997 * 109.47315 * 85.27760 * 12 11 9 15 15 C 1.50706 * 109.47179 * 205.28093 * 12 11 9 16 16 H 1.07993 * 119.99796 * 359.97438 * 15 12 11 17 17 C 1.37871 * 120.00149 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00279 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00192 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46665 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47233 * 119.99775 * 19 17 15 22 22 H 1.48504 * 109.47356 * 240.00239 * 19 17 15 23 23 C 1.38724 * 120.03071 * 180.22892 * 3 2 1 24 24 F 1.35100 * 120.07872 * 0.04276 * 23 3 2 25 25 H 1.08998 * 109.47028 * 300.00203 * 1 2 3 26 26 H 1.09001 * 109.46424 * 60.00463 * 1 2 3 27 27 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.94579 * 359.95915 * 4 3 2 29 29 H 1.07998 * 119.92455 * 180.02562 * 5 4 3 30 30 H 1.08004 * 119.96877 * 179.97438 * 6 5 4 31 31 H 0.96996 * 119.99725 * 214.65504 * 8 7 6 32 32 H 0.96993 * 119.99856 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47270 * 300.00309 * 14 12 11 34 34 H 1.09006 * 109.46676 * 59.99899 * 14 12 11 35 35 H 1.09004 * 109.47450 * 179.97438 * 14 12 11 36 36 H 0.97001 * 120.00445 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2912 2.3755 -0.0005 5 6 1.9170 3.6075 0.0000 6 6 3.2967 3.6851 0.0005 7 6 4.0585 2.5243 0.0011 8 7 5.4571 2.6033 0.0011 9 6 6.0759 3.6000 0.6645 10 8 5.4203 4.4761 1.1946 11 7 7.4213 3.6256 0.7404 12 6 8.0939 4.7123 1.4563 13 1 7.5331 5.6374 1.3227 14 6 8.1688 4.3720 2.9461 15 6 9.4877 4.8866 0.9101 16 1 9.8375 4.2511 0.1100 17 6 10.3165 5.8566 1.4325 18 7 9.8911 6.6295 2.4079 19 14 12.0443 6.0722 0.7560 20 1 12.2781 5.0847 -0.3282 21 1 12.1963 7.4468 0.2154 22 1 13.0323 5.8558 1.8434 23 6 3.4316 1.2846 -0.0048 24 9 4.1695 0.1529 -0.0104 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2126 2.3185 -0.0016 29 1 1.3266 4.5117 0.0000 30 1 3.7828 4.6496 0.0005 31 1 5.9802 1.9405 -0.4763 32 1 7.9442 2.9268 0.3172 33 1 7.1608 4.2459 3.3411 34 1 8.7297 3.4469 3.0796 35 1 8.6698 5.1804 3.4787 36 1 10.4744 7.3117 2.7757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775797664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:58 Heat of formation + Delta-G solvation = -81.120378 kcal Electronic energy + Delta-G solvation = -21682.114265 eV Core-core repulsion = 18081.636012 eV Total energy + Delta-G solvation = -3600.478253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.71199 -40.36135 -39.52225 -37.42600 -35.04976 -34.15189 -32.42886 -30.36251 -29.68919 -28.19468 -27.42310 -25.27425 -23.05155 -22.65639 -21.13162 -19.91980 -18.52167 -18.41739 -17.28997 -16.78632 -16.34031 -16.11972 -15.75507 -15.13733 -15.00634 -14.70357 -14.55821 -14.47290 -14.11835 -13.36401 -12.86778 -12.57726 -12.47793 -12.41896 -11.83735 -11.81973 -11.41660 -11.35531 -11.11205 -10.99920 -10.76539 -10.34798 -10.25705 -10.10198 -9.45777 -9.06612 -8.59821 -8.30758 -8.17443 -7.82981 -6.15008 -4.24276 1.09404 1.29527 2.73865 3.22666 3.27026 3.31401 3.35047 3.47815 3.86651 4.20763 4.30543 4.67431 4.81781 4.85076 4.90206 4.98870 5.17715 5.19095 5.32161 5.33994 5.79671 5.95951 6.20904 6.29375 6.50435 6.76314 6.87923 6.96102 7.06533 7.17630 7.20133 7.40579 7.59783 7.78657 7.94750 8.12339 8.67783 8.79459 9.15417 9.43735 10.91067 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.041510 B = 0.003376 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.376419 B = 8292.750223 C = 8583.505704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.110 3.890 4 C -0.209 4.209 5 C -0.070 4.070 6 C -0.131 4.131 7 C 0.190 3.810 8 N -0.691 5.691 9 C 0.695 3.305 10 O -0.579 6.579 11 N -0.715 5.715 12 C 0.280 3.720 13 H 0.051 0.949 14 C -0.149 4.149 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.028 3.972 24 F -0.134 7.134 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.407 0.593 32 H 0.388 0.612 33 H 0.016 0.984 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 -10.348 -6.037 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.064 3.936 4 C -0.229 4.229 5 C -0.089 4.089 6 C -0.152 4.152 7 C 0.092 3.908 8 N -0.339 5.339 9 C 0.396 3.604 10 O -0.456 6.456 11 N -0.366 5.366 12 C 0.178 3.822 13 H 0.069 0.931 14 C -0.208 4.208 15 C -0.573 4.573 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.004 3.996 24 F -0.112 7.112 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.242 0.758 32 H 0.220 0.780 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.110 0.890 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.682 -9.562 -5.367 19.963 hybrid contribution 1.341 -0.675 -0.674 1.646 sum -15.341 -10.237 -6.041 19.407 Atomic orbital electron populations 1.23081 0.78089 1.03980 1.01519 1.86104 1.21550 1.25945 1.88916 1.18608 0.90039 0.85522 0.99479 1.21044 0.99982 0.91479 1.10355 1.20909 0.94091 0.97125 0.96750 1.21342 0.93170 0.98725 1.01974 1.17265 0.83314 0.91436 0.98830 1.42753 1.03875 1.31949 1.55337 1.16096 0.83429 0.81568 0.79329 1.90867 1.64495 1.38350 1.51915 1.45889 1.02769 1.30532 1.57426 1.18727 0.91316 0.84143 0.87988 0.93129 1.22112 0.97900 1.01403 0.99340 1.21243 0.97614 1.18676 1.19734 0.91963 1.24880 0.98753 0.95279 0.94780 1.69912 1.36534 1.20383 1.25178 0.86369 0.83666 0.78073 0.78836 1.19736 1.20851 1.20855 1.16591 0.86255 0.81586 1.15126 1.91454 1.76400 1.48593 1.94788 0.92435 0.92488 0.88187 0.84788 0.84807 0.82583 0.75795 0.77984 0.96537 0.95451 0.89008 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.78 10.36 -19.60 -0.20 -3.98 16 3 C 0.11 1.45 6.69 -39.21 -0.26 1.19 16 4 C -0.21 -2.30 9.04 -39.41 -0.36 -2.66 16 5 C -0.07 -0.83 10.03 -39.62 -0.40 -1.23 16 6 C -0.13 -2.00 8.70 -39.38 -0.34 -2.35 16 7 C 0.19 3.02 6.31 -83.61 -0.53 2.49 16 8 N -0.69 -11.26 5.24 -14.18 -0.07 -11.34 16 9 C 0.70 14.13 8.38 -86.92 -0.73 13.40 16 10 O -0.58 -13.62 13.41 5.29 0.07 -13.55 16 11 N -0.72 -14.87 5.07 -59.81 -0.30 -15.18 16 12 C 0.28 7.06 2.56 -69.09 -0.18 6.89 16 13 H 0.05 1.46 7.57 -51.93 -0.39 1.07 16 14 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 15 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -24.63 11.32 55.43 0.63 -24.00 16 19 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.03 0.41 7.32 -39.15 -0.29 0.13 16 24 F -0.13 -2.07 16.79 2.25 0.04 -2.04 16 25 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.13 1.05 6.29 -52.48 -0.33 0.72 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.16 2.69 6.19 -52.48 -0.32 2.36 16 31 H 0.41 5.47 8.67 -40.82 -0.35 5.12 16 32 H 0.39 6.93 8.56 -40.82 -0.35 6.58 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -31.38 312.37 -6.39 -37.77 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.09 Total: 9.10 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.14 Total: 3.05 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.25 Total: -50.51 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.13 Total: -17.53 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.38 -6.39 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775797664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.355 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds