Wall clock time and date at job start Tue Mar 31 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00635 * 2 1 4 4 C 1.50699 * 119.99709 * 179.97438 * 2 1 3 5 5 N 1.46906 * 109.47140 * 94.99877 * 4 2 1 6 6 C 1.46900 * 110.99728 * 66.04805 * 5 4 2 7 7 C 1.46905 * 111.00051 * 189.99841 * 5 4 2 8 8 N 1.46500 * 109.47132 * 169.99846 * 7 5 4 9 9 N 1.40169 * 126.14189 * 90.02510 * 8 7 5 10 10 C 1.32234 * 107.75528 * 180.02562 * 9 8 7 11 11 C 1.40126 * 125.92517 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00063 * 179.97438 * 11 10 9 13 13 C 1.40036 * 119.99635 * 359.97438 * 11 10 9 14 14 N 1.30793 * 120.00324 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99663 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47130 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46925 * 120.00216 * 15 13 11 18 18 H 1.48493 * 109.47010 * 239.99913 * 15 13 11 19 19 N 1.38500 * 108.14902 * 0.02562 * 10 9 8 20 20 C 1.46503 * 125.83711 * 179.97438 * 19 10 9 21 21 C 1.34729 * 108.33076 * 359.73433 * 19 10 9 22 22 S 1.71195 * 125.97607 * 180.26291 * 21 19 10 23 23 H 1.08001 * 120.00458 * 180.02562 * 1 2 3 24 24 H 1.08011 * 119.99900 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47063 * 270.00419 * 3 2 1 26 26 H 1.09005 * 109.46714 * 29.99556 * 3 2 1 27 27 H 1.08991 * 109.47267 * 149.99938 * 3 2 1 28 28 H 1.09004 * 109.47103 * 334.99978 * 4 2 1 29 29 H 1.09000 * 109.47247 * 214.99856 * 4 2 1 30 30 H 1.08996 * 109.47030 * 59.99921 * 6 5 4 31 31 H 1.08999 * 109.46702 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.46890 * 299.99929 * 6 5 4 33 33 H 1.08997 * 109.46807 * 290.00444 * 7 5 4 34 34 H 1.09000 * 109.46636 * 50.00310 * 7 5 4 35 35 H 0.96997 * 120.00323 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47202 * 89.99659 * 20 19 10 37 37 H 1.08998 * 109.47717 * 210.00190 * 20 19 10 38 38 H 1.09001 * 109.46747 * 330.00234 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0633 -1.3051 0.0006 5 7 2.4127 -1.6695 -1.3790 6 6 3.3708 -0.7132 -1.9495 7 6 2.9351 -3.0409 -1.4451 8 7 3.0472 -3.4538 -2.8463 9 7 4.1673 -3.2830 -3.6714 10 6 3.8736 -3.7849 -4.8590 11 6 4.7237 -3.8135 -5.9726 12 1 4.3838 -4.2494 -6.9004 13 6 6.0139 -3.2766 -5.8824 14 7 6.4254 -2.7482 -4.7589 15 14 7.1475 -3.3153 -7.3667 16 1 6.4490 -3.9626 -8.5062 17 1 7.5228 -1.9277 -7.7392 18 1 8.3719 -4.0870 -7.0345 19 7 2.5797 -4.2765 -4.8116 20 6 1.8643 -4.9167 -5.9183 21 6 2.0931 -4.0701 -3.5723 22 16 0.5344 -4.5101 -3.0177 23 1 -0.5401 -0.9353 0.0004 24 1 -0.5400 0.9354 0.0004 25 1 2.2452 1.6197 -1.0277 26 1 1.4744 2.0647 0.5138 27 1 3.0159 1.1746 0.5138 28 1 1.4384 -2.0853 0.4353 29 1 2.9741 -1.1987 0.5900 30 1 4.2801 -0.7076 -1.3486 31 1 3.6119 -1.0062 -2.9713 32 1 2.9308 0.2841 -1.9521 33 1 3.9180 -3.0783 -0.9755 34 1 2.2563 -3.7139 -0.9212 35 1 7.3192 -2.3767 -4.6963 36 1 2.0457 -5.9912 -5.8949 37 1 0.7957 -4.7264 -5.8187 38 1 2.2193 -4.5088 -6.8647 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794638137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:18 Heat of formation + Delta-G solvation = 89.776761 kcal Electronic energy + Delta-G solvation = -20404.427345 eV Core-core repulsion = 17409.865676 eV Total energy + Delta-G solvation = -2994.561670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.63142 -39.27846 -36.48827 -35.73190 -34.72257 -32.43357 -29.69548 -29.05927 -28.27714 -27.52759 -26.72884 -24.12439 -22.73354 -22.53730 -19.62680 -19.29621 -18.34841 -17.52684 -17.42078 -16.80756 -16.50612 -16.31904 -16.13975 -15.38903 -15.10982 -14.59995 -14.43007 -14.05427 -13.76422 -13.71717 -13.44347 -13.20001 -13.05513 -12.83859 -12.66653 -12.50231 -12.42641 -12.38029 -11.96324 -11.93179 -11.72408 -11.37269 -10.93639 -10.68072 -10.00167 -9.46180 -8.81225 -8.64253 -8.54896 -6.97171 0.52204 0.83107 1.24994 1.29750 1.45085 1.61691 1.70693 1.85243 2.12941 2.43290 3.01140 3.10086 3.57007 3.84558 3.99464 4.07492 4.08828 4.33116 4.40459 4.45994 4.47377 4.55241 4.63648 4.70786 4.77232 4.85408 4.92340 4.96237 5.04575 5.09712 5.18883 5.28249 5.63426 5.68940 5.81705 5.95443 6.01589 6.16430 6.48326 6.57087 7.32803 8.24013 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.005729 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.297709 B = 4886.638620 C = 6147.976486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.135 4.135 3 C -0.115 4.115 4 C 0.097 3.903 5 N -0.554 5.554 6 C 0.038 3.962 7 C 0.324 3.676 8 N -0.374 5.374 9 N -0.368 5.368 10 C 0.352 3.648 11 C -0.450 4.450 12 H 0.118 0.882 13 C 0.037 3.963 14 N -0.775 5.775 15 Si 1.005 2.995 16 H -0.245 1.245 17 H -0.268 1.268 18 H -0.269 1.269 19 N -0.518 5.518 20 C 0.095 3.905 21 C 0.467 3.533 22 S -0.738 6.738 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.291 0.709 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 5.261 2.332 5.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.136 4.136 3 C -0.171 4.171 4 C -0.029 4.029 5 N -0.280 5.280 6 C -0.110 4.110 7 C 0.113 3.887 8 N -0.160 5.160 9 N -0.201 5.201 10 C 0.104 3.896 11 C -0.491 4.491 12 H 0.136 0.864 13 C -0.186 4.186 14 N -0.400 5.400 15 Si 0.824 3.176 16 H -0.167 1.167 17 H -0.193 1.193 18 H -0.193 1.193 19 N -0.219 5.219 20 C -0.046 4.046 21 C 0.096 3.904 22 S -0.614 6.614 23 H 0.108 0.892 24 H 0.131 0.869 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.068 5.616 3.174 6.451 hybrid contribution 1.334 -0.305 -0.683 1.530 sum 1.402 5.311 2.490 6.031 Atomic orbital electron populations 1.23818 0.95231 1.02233 0.99579 1.21614 0.95635 0.95046 1.01274 1.20948 1.00296 0.93954 1.01917 1.21136 0.99246 0.96092 0.86441 1.61841 1.43537 1.01035 1.21554 1.22358 0.93136 0.96419 0.99074 1.21824 0.99949 0.91013 0.75926 1.49424 1.10060 1.44311 1.12156 1.79265 1.03268 1.37053 1.00519 1.21708 0.81551 0.91169 0.95180 1.18944 0.97033 1.37457 0.95713 0.86412 1.26858 0.99215 0.91947 1.00605 1.69962 1.19027 1.23690 1.27291 0.84777 0.76984 0.79051 0.76742 1.16743 1.19331 1.19343 1.46248 1.13890 1.51337 1.10380 1.22026 0.97570 0.98192 0.86820 1.22839 0.92774 0.89656 0.85144 1.92607 1.07051 1.78830 1.82944 0.89235 0.86854 0.91953 0.90286 0.91510 0.89833 0.92715 0.95195 0.94141 0.89800 0.91267 0.87320 0.89783 0.89973 0.89403 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 13.89 67.79 0.94 -3.29 16 2 C -0.14 -3.42 5.10 -16.48 -0.08 -3.51 16 3 C -0.11 -2.37 8.99 71.24 0.64 -1.73 16 4 C 0.10 2.74 5.15 85.56 0.44 3.19 16 5 N -0.55 -20.05 4.89 -939.48 -4.60 -24.64 16 6 C 0.04 1.37 9.03 127.69 1.15 2.53 16 7 C 0.32 12.88 5.92 170.80 1.01 13.89 16 8 N -0.37 -17.75 3.34 -359.72 -1.20 -18.95 16 9 N -0.37 -18.85 9.69 -55.17 -0.53 -19.38 16 10 C 0.35 17.35 7.50 133.53 1.00 18.35 16 11 C -0.45 -20.41 8.98 23.16 0.21 -20.20 16 12 H 0.12 4.68 7.11 -2.91 -0.02 4.66 16 13 C 0.04 1.60 5.50 85.28 0.47 2.07 16 14 N -0.77 -36.74 11.90 21.84 0.26 -36.48 16 15 Si 1.01 32.19 29.56 68.60 2.03 34.22 16 16 H -0.24 -7.25 7.11 99.48 0.71 -6.55 16 17 H -0.27 -8.48 7.11 99.48 0.71 -7.77 16 18 H -0.27 -8.49 7.11 99.48 0.71 -7.78 16 19 N -0.52 -23.75 3.17 -548.31 -1.74 -25.48 16 20 C 0.10 3.37 10.64 127.77 1.36 4.73 16 21 C 0.47 22.88 7.84 179.06 1.40 24.28 16 22 S -0.74 -37.35 29.50 -56.49 -1.67 -39.02 16 23 H 0.09 2.43 7.99 -2.91 -0.02 2.41 16 24 H 0.11 2.33 8.04 -2.90 -0.02 2.30 16 25 H 0.06 1.38 6.48 -2.39 -0.02 1.36 16 26 H 0.08 1.33 8.06 -2.38 -0.02 1.31 16 27 H 0.07 1.27 8.08 -2.39 -0.02 1.26 16 28 H 0.08 2.32 7.78 -2.38 -0.02 2.30 16 29 H 0.05 1.36 8.08 -2.39 -0.02 1.35 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.81 6.64 -2.39 -0.02 1.79 16 32 H 0.08 2.68 5.03 -2.39 -0.01 2.67 16 33 H 0.07 2.62 8.12 -2.39 -0.02 2.60 16 34 H 0.11 4.28 7.43 -2.39 -0.02 4.26 16 35 H 0.29 12.44 8.30 -92.71 -0.77 11.68 16 36 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.09 3.13 7.62 -2.39 -0.02 3.12 16 38 H 0.11 3.22 7.32 -2.39 -0.02 3.20 16 Total: -1.00 -63.82 330.24 2.15 -61.67 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 1.05 Total: 27.76 kcal Atomic # 6 Polarization: 31.77 SS G_CDS: 8.54 Total: 40.31 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -7.81 Total: -124.94 kcal Atomic # 14 Polarization: 32.19 SS G_CDS: 2.03 Total: 34.22 kcal Atomic # 16 Polarization: -37.35 SS G_CDS: -1.67 Total: -39.02 kcal Total: -63.82 2.15 -61.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794638137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.448 kcal (2) G-P(sol) polarization free energy of solvation -63.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds