Wall clock time and date at job start Tue Mar 31 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47584 * 2 1 4 4 C 1.53004 * 109.46952 * 239.99907 * 2 1 3 5 5 C 1.50707 * 109.46890 * 60.00336 * 4 2 1 6 6 H 1.07997 * 119.99830 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99548 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00314 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99299 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47645 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47095 * 120.00121 * 9 7 5 12 12 H 1.48504 * 109.47081 * 239.99526 * 9 7 5 13 13 C 1.53000 * 109.47037 * 120.00348 * 2 1 3 14 14 N 1.46897 * 109.47071 * 299.99648 * 13 2 1 15 15 C 1.46901 * 110.99942 * 179.97438 * 14 13 2 16 16 C 1.50700 * 109.47234 * 179.97438 * 15 14 13 17 17 C 1.38606 * 120.42134 * 104.97838 * 16 15 14 18 18 C 1.38667 * 118.43634 * 180.02562 * 17 16 15 19 19 C 1.38187 * 119.19469 * 0.02562 * 18 17 16 20 20 N 1.31884 * 120.77685 * 359.97438 * 19 18 17 21 21 C 1.31969 * 121.70563 * 0.02562 * 20 19 18 22 22 Cl 1.73607 * 119.63069 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.47079 * 300.00064 * 1 2 3 24 24 H 1.08998 * 109.46677 * 59.99416 * 1 2 3 25 25 H 1.09002 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47384 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47326 * 300.00459 * 3 2 1 28 28 H 1.09004 * 109.46965 * 59.99866 * 3 2 1 29 29 H 1.09004 * 109.47024 * 179.97438 * 4 2 1 30 30 H 1.08994 * 109.47118 * 300.00225 * 4 2 1 31 31 H 0.96999 * 119.99550 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46900 * 179.97438 * 13 2 1 33 33 H 1.09002 * 109.47120 * 59.99856 * 13 2 1 34 34 H 1.00901 * 110.99867 * 56.05025 * 14 13 2 35 35 H 1.09002 * 109.46848 * 60.00619 * 15 14 13 36 36 H 1.08995 * 109.47350 * 300.00605 * 15 14 13 37 37 H 1.08007 * 120.78524 * 0.05026 * 17 16 15 38 38 H 1.08004 * 120.40720 * 180.02562 * 18 17 16 39 39 H 1.08000 * 119.61217 * 180.25801 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9165 0.8671 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6280 -1.5503 -3.8527 9 14 1.2490 0.3996 -5.2571 10 1 0.4246 1.5666 -4.8530 11 1 2.4044 0.8664 -6.0650 12 1 0.4243 -0.5335 -6.0661 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0209 -0.6954 3.6703 16 6 1.5004 0.0419 4.8771 17 6 0.4574 -0.4827 5.6242 18 6 0.0105 0.2304 6.7262 19 6 0.6148 1.4325 7.0415 20 7 1.6053 1.9026 6.3085 21 6 2.0567 1.2515 5.2530 22 17 3.3632 1.9205 4.3259 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 3.1300 -0.7209 -1.2495 30 1 1.6766 -1.7489 -1.2493 31 1 2.8622 -1.8816 -4.7337 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.5438 0.0412 2.4402 35 1 3.1108 -0.6956 3.6873 36 1 1.6571 -1.7227 3.6868 37 1 0.0036 -1.4250 5.3545 38 1 -0.7999 -0.1490 7.3310 39 1 0.2749 1.9915 7.9008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808430802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:28 Heat of formation + Delta-G solvation = 11.111973 kcal Electronic energy + Delta-G solvation = -19705.976292 eV Core-core repulsion = 16673.667004 eV Total energy + Delta-G solvation = -3032.309288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48991 -37.69345 -36.54933 -35.00907 -32.77367 -32.12433 -31.00952 -27.17705 -26.38970 -26.27063 -24.46855 -23.82256 -22.43964 -21.76946 -18.01439 -17.51582 -17.03466 -16.24818 -15.73179 -15.13566 -14.94829 -14.53878 -14.15832 -13.93977 -13.60073 -13.28246 -13.14263 -12.57880 -12.51994 -12.00639 -11.81196 -11.68420 -11.61524 -11.07484 -10.97405 -10.85441 -10.73800 -10.48334 -10.28410 -10.13113 -10.07340 -9.80927 -9.66895 -9.12363 -8.95639 -8.80304 -8.31066 -8.12803 -5.95490 -3.95298 0.69282 0.89914 1.86342 3.33119 3.38351 3.41125 3.44800 4.16837 4.38970 4.48283 4.53200 4.63087 4.79079 4.94858 5.13154 5.35773 5.40657 5.60558 5.70924 5.71078 5.77338 5.89606 5.99452 6.20979 6.24348 6.34015 6.51627 6.69463 6.79919 6.85616 7.18988 7.22350 7.29047 7.37231 7.50016 7.61899 7.71815 7.86704 8.05119 8.49685 9.10381 9.67601 11.16241 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.003486 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.762655 B = 8030.763653 C = 8275.427150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.072 3.928 14 N -0.676 5.676 15 C 0.097 3.903 16 C -0.115 4.115 17 C -0.061 4.061 18 C -0.174 4.174 19 C 0.112 3.888 20 N -0.483 5.483 21 C 0.195 3.805 22 Cl -0.011 7.011 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.339 0.661 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 1.852 21.643 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.057 4.057 14 N -0.308 5.308 15 C -0.032 4.032 16 C -0.119 4.119 17 C -0.087 4.087 18 C -0.194 4.194 19 C -0.045 4.045 20 N -0.194 5.194 21 C 0.031 3.969 22 Cl 0.018 6.982 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.158 0.842 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.087 3.060 21.638 22.071 hybrid contribution -1.145 -1.172 -1.189 2.024 sum -4.232 1.889 20.449 20.968 Atomic orbital electron populations 1.21769 0.96148 1.00277 1.00416 1.20621 0.94658 0.96198 0.94286 1.21590 0.99776 0.95726 1.00192 1.19128 0.96139 0.94929 0.90176 1.21281 1.30634 1.11864 0.90599 0.92238 1.25013 0.95425 0.95126 0.99056 1.69973 1.37353 1.23301 1.23154 0.86618 0.78618 0.79741 0.83522 1.19768 1.21159 1.21216 1.22127 0.99964 0.94588 0.88974 1.60585 1.16338 1.53461 1.00375 1.20845 1.01133 0.94150 0.87081 1.20640 0.97272 0.95281 0.98679 1.21571 0.93948 0.99716 0.93511 1.22183 1.01945 0.96678 0.98628 1.22668 0.90806 0.93531 0.97531 1.67096 1.12766 1.34345 1.05202 1.21615 0.92795 0.90743 0.91797 1.98438 1.44638 1.85492 1.69649 0.94879 0.91719 0.94137 0.94186 0.92788 0.93800 0.96651 0.96947 0.93243 0.91341 0.95753 0.84230 0.89434 0.94126 0.84063 0.84181 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.89 37.16 0.29 -2.06 16 2 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 3 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.79 7.65 -34.44 -0.26 -14.05 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.07 1.19 4.65 -3.83 -0.02 1.17 16 14 N -0.68 -9.38 5.61 -115.06 -0.65 -10.02 16 15 C 0.10 1.14 5.16 -4.98 -0.03 1.12 16 16 C -0.12 -1.29 5.41 -104.44 -0.57 -1.85 16 17 C -0.06 -0.53 9.81 -39.29 -0.39 -0.92 16 18 C -0.17 -1.31 10.11 -39.44 -0.40 -1.71 16 19 C 0.11 1.00 11.18 -17.55 -0.20 0.81 16 20 N -0.48 -5.98 10.34 -10.36 -0.11 -6.08 16 21 C 0.20 2.49 7.27 -17.45 -0.13 2.37 16 22 Cl -0.01 -0.15 27.72 -51.86 -1.44 -1.59 16 23 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 24 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 28 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.57 6.76 -39.29 -0.27 4.31 16 35 H 0.09 1.07 7.60 -51.93 -0.39 0.67 16 36 H 0.04 0.43 8.00 -51.93 -0.42 0.01 16 37 H 0.14 0.92 8.05 -52.48 -0.42 0.50 16 38 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -30.53 331.88 -8.90 -39.43 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.74 Total: -1.13 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.69 Total: -16.13 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.02 Total: -42.19 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.44 Total: -1.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.53 -8.90 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808430802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.538 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds