Wall clock time and date at job start Tue Mar 31 2020 05:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47426 * 2 1 4 4 O 1.42903 * 109.47300 * 119.99865 * 2 1 3 5 5 C 1.50700 * 109.47327 * 239.99848 * 2 1 3 6 6 N 1.29031 * 124.91832 * 285.02575 * 5 2 1 7 7 C 1.31777 * 117.12956 * 179.73098 * 6 5 2 8 8 C 1.33642 * 114.49865 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.03925 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47334 * 89.99279 * 9 8 7 11 11 C 1.46902 * 111.00167 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47324 * 185.35256 * 11 10 9 13 13 C 1.50703 * 115.54901 * 65.04969 * 12 11 10 14 14 H 1.07994 * 120.00084 * 265.44705 * 13 12 11 15 15 C 1.37873 * 120.00150 * 85.44684 * 13 12 11 16 16 N 1.31520 * 120.00063 * 353.59327 * 15 13 12 17 17 Si 1.86792 * 120.00275 * 173.59723 * 15 13 12 18 18 H 1.48505 * 109.47195 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47538 * 119.99822 * 17 15 13 20 20 H 1.48500 * 109.47228 * 239.99679 * 17 15 13 21 21 C 1.53001 * 117.49733 * 279.38212 * 12 11 10 22 22 C 1.53004 * 117.50021 * 210.71945 * 12 11 10 23 23 S 1.70977 * 124.91688 * 104.71685 * 5 2 1 24 24 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47023 * 300.00117 * 1 2 3 26 26 H 1.09000 * 109.47171 * 60.00200 * 1 2 3 27 27 H 0.96700 * 113.99752 * 60.00244 * 4 2 1 28 28 H 1.08001 * 122.75388 * 179.97438 * 7 6 5 29 29 H 1.09001 * 109.47259 * 209.99670 * 9 8 7 30 30 H 1.09006 * 109.46915 * 329.99241 * 9 8 7 31 31 H 1.00902 * 111.00265 * 303.95691 * 10 9 8 32 32 H 1.08996 * 109.46900 * 305.35512 * 11 10 9 33 33 H 1.09004 * 109.46680 * 65.34935 * 11 10 9 34 34 H 0.96996 * 120.00465 * 179.97438 * 16 15 13 35 35 H 1.08996 * 117.49795 * 359.97438 * 21 12 11 36 36 H 1.09004 * 117.49556 * 145.02421 * 21 12 11 37 37 H 1.08996 * 117.49888 * 214.97931 * 22 12 11 38 38 H 1.09002 * 117.49350 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7104 -1.2304 6 7 2.0199 -1.9893 -1.4017 7 6 2.4938 -2.4473 -2.5428 8 6 2.9308 -1.5023 -3.3807 9 6 3.5212 -1.7335 -4.7478 10 7 2.4495 -1.7215 -5.7524 11 6 2.9890 -1.9449 -7.1004 12 6 1.8677 -1.7934 -8.1302 13 6 1.2720 -0.4137 -8.2441 14 1 0.3833 -0.1614 -7.6848 15 6 1.8616 0.5263 -9.0624 16 7 3.0110 0.2629 -9.6448 17 14 1.0279 2.1740 -9.3439 18 1 -0.2455 2.2212 -8.5813 19 1 1.9221 3.2664 -8.8832 20 1 0.7440 2.3442 -10.7916 21 6 0.9319 -2.9861 -8.3363 22 6 1.9646 -2.6288 -9.4083 23 16 2.6944 0.0619 -2.6047 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7210 -1.5952 1.2329 28 1 2.5272 -3.5002 -2.7811 29 1 4.2384 -0.9440 -4.9721 30 1 4.0262 -2.6993 -4.7668 31 1 1.7382 -2.4019 -5.5306 32 1 3.7711 -1.2137 -7.3045 33 1 3.4062 -2.9501 -7.1627 34 1 3.4256 0.9241 -10.2208 35 1 1.1154 -3.8789 -7.7386 36 1 -0.1145 -2.7729 -8.5548 37 1 1.5971 -2.1807 -10.3315 38 1 2.8275 -3.2861 -9.5157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809658295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:30 Heat of formation + Delta-G solvation = 15.203410 kcal Electronic energy + Delta-G solvation = -19394.796087 eV Core-core repulsion = 16364.707923 eV Total energy + Delta-G solvation = -3030.088164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87025 -37.49419 -37.00705 -34.73700 -31.89126 -31.72760 -29.96431 -26.78562 -25.58740 -24.64707 -23.17016 -22.37006 -21.03873 -19.43499 -19.05711 -18.37254 -16.72303 -16.23879 -15.39766 -15.16343 -14.89306 -14.71740 -14.45756 -14.16822 -13.78951 -13.58988 -13.32554 -12.67336 -12.60007 -12.25048 -12.03610 -11.63611 -11.49783 -11.31001 -11.05086 -10.95230 -10.75213 -10.68610 -10.44935 -10.19372 -9.58787 -9.49659 -9.16606 -8.84998 -8.76833 -8.39338 -8.07954 -7.67562 -5.97279 -3.98625 0.71589 1.37650 1.84718 2.81743 3.31952 3.40360 3.45040 3.90176 4.26291 4.46559 4.69395 4.75870 4.81853 5.07736 5.12947 5.28533 5.33358 5.44617 5.46281 5.61986 5.71198 5.85006 5.93334 6.13544 6.21692 6.28086 6.44976 6.57085 6.71416 6.81540 7.10069 7.32345 7.45145 7.51137 7.70386 7.81950 7.96187 8.02961 8.53594 9.00953 9.64797 11.12658 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.004130 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.404711 B = 6777.214499 C = 7506.944441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.189 3.811 3 H 0.115 0.885 4 O -0.550 6.550 5 C -0.017 4.017 6 N -0.466 5.466 7 C 0.026 3.974 8 C -0.192 4.192 9 C 0.131 3.869 10 N -0.663 5.663 11 C 0.107 3.893 12 C 0.052 3.948 13 C -0.469 4.469 14 H 0.059 0.941 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.286 1.286 21 C -0.216 4.216 22 C -0.157 4.157 23 S 0.169 5.831 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.385 0.615 28 H 0.172 0.828 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.333 0.667 32 H 0.078 0.922 33 H -0.003 1.003 34 H 0.257 0.743 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 -2.634 15.765 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.127 3.873 3 H 0.133 0.867 4 O -0.356 6.356 5 C -0.295 4.295 6 N -0.181 5.181 7 C -0.126 4.126 8 C -0.314 4.314 9 C -0.001 4.001 10 N -0.294 5.294 11 C -0.021 4.021 12 C 0.051 3.949 13 C -0.507 4.507 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.253 4.253 22 C -0.195 4.195 23 S 0.424 5.576 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.189 0.811 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.150 0.850 32 H 0.097 0.903 33 H 0.015 0.985 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.143 -0.557 15.859 15.870 hybrid contribution -0.378 -1.592 -0.767 1.807 sum -0.522 -2.150 15.092 15.254 Atomic orbital electron populations 1.22477 0.94254 1.03671 1.03326 1.20369 0.93514 0.94626 0.78816 0.86709 1.86532 1.77430 1.30049 1.41558 1.27875 1.05467 0.93795 1.02337 1.66047 1.17726 1.12317 1.22059 1.21601 1.01026 1.01048 0.88949 1.26075 1.08038 0.94750 1.02512 1.20304 0.93977 1.00597 0.85172 1.60359 1.11569 1.56125 1.01329 1.21590 0.98024 0.96174 0.86333 1.18806 0.93042 0.90821 0.92213 1.20336 1.10845 0.94250 1.25232 0.92247 1.24933 0.94695 0.98009 0.95809 1.70013 1.15970 1.34806 1.31590 0.86618 0.79805 0.84328 0.77732 1.19783 1.21186 1.21238 1.22999 0.96533 1.00335 1.05428 1.22523 0.98538 1.03469 0.95004 1.84101 1.55154 1.09952 1.08429 0.91413 0.90800 0.90989 0.76659 0.81122 0.89870 0.93872 0.84961 0.90347 0.98459 0.93362 0.92212 0.90504 0.90018 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.52 37.15 0.35 -1.21 16 2 C 0.19 1.93 4.10 -27.89 -0.11 1.82 16 3 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 4 O -0.55 -5.91 13.33 -35.23 -0.47 -6.38 16 5 C -0.02 -0.22 6.28 -13.45 -0.08 -0.30 16 6 N -0.47 -6.36 10.37 -11.86 -0.12 -6.48 16 7 C 0.03 0.35 11.25 -19.19 -0.22 0.13 16 8 C -0.19 -2.75 6.11 -35.92 -0.22 -2.97 16 9 C 0.13 2.02 6.21 -4.98 -0.03 1.99 16 10 N -0.66 -12.38 6.37 -115.06 -0.73 -13.11 16 11 C 0.11 2.28 5.51 -3.82 -0.02 2.26 16 12 C 0.05 1.24 1.55 -155.66 -0.24 0.99 16 13 C -0.47 -12.56 8.74 -34.44 -0.30 -12.86 16 14 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 15 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 16 N -0.89 -24.76 12.92 55.43 0.72 -24.05 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.22 -4.58 9.96 -26.69 -0.27 -4.85 16 22 C -0.16 -3.63 9.41 -26.69 -0.25 -3.88 16 23 S 0.17 2.26 23.18 -107.50 -2.49 -0.23 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.38 3.37 8.90 45.56 0.41 3.77 16 28 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.33 5.92 8.78 -39.29 -0.34 5.57 16 32 H 0.08 1.87 8.13 -51.93 -0.42 1.45 16 33 H 0.00 -0.05 8.09 -51.93 -0.42 -0.47 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -29.25 340.54 -9.46 -38.71 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.98 Total: 7.38 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -1.49 Total: -17.15 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.14 Total: -43.64 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.47 Total: -6.38 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.49 Total: -0.23 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.25 -9.46 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809658295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.908 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds