Wall clock time and date at job start Tue Mar 31 2020 05:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46655 * 2 1 4 4 O 1.42900 * 109.47400 * 239.99579 * 2 1 3 5 5 C 1.50698 * 109.46892 * 119.99456 * 2 1 3 6 6 N 1.29029 * 124.91844 * 74.96401 * 5 2 1 7 7 C 1.31783 * 117.12695 * 179.74697 * 6 5 2 8 8 C 1.33641 * 114.49691 * 0.52378 * 7 6 5 9 9 C 1.50698 * 126.03655 * 179.78895 * 8 7 6 10 10 N 1.46904 * 109.47217 * 89.70813 * 9 8 7 11 11 C 1.46904 * 110.99787 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46936 * 184.37235 * 11 10 9 13 13 C 1.50702 * 115.54841 * 301.90436 * 12 11 10 14 14 H 1.08006 * 119.99589 * 95.21382 * 13 12 11 15 15 C 1.37870 * 120.00144 * 275.21363 * 13 12 11 16 16 N 1.31514 * 120.00201 * 7.19663 * 15 13 12 17 17 Si 1.86799 * 120.00259 * 187.20142 * 15 13 12 18 18 H 1.48500 * 109.47163 * 269.99741 * 17 15 13 19 19 H 1.48501 * 109.46945 * 29.99804 * 17 15 13 20 20 H 1.48502 * 109.47400 * 149.99795 * 17 15 13 21 21 C 1.53002 * 117.49994 * 87.57206 * 12 11 10 22 22 C 1.52996 * 117.49954 * 156.23249 * 12 11 10 23 23 S 1.70983 * 124.91821 * 255.00133 * 5 2 1 24 24 H 1.08996 * 109.47339 * 299.99864 * 1 2 3 25 25 H 1.08991 * 109.47296 * 60.00718 * 1 2 3 26 26 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 27 27 H 0.96706 * 113.99847 * 300.00021 * 4 2 1 28 28 H 1.07997 * 122.74849 * 180.32810 * 7 6 5 29 29 H 1.09005 * 109.47183 * 329.71384 * 9 8 7 30 30 H 1.08995 * 109.47302 * 209.71106 * 9 8 7 31 31 H 1.00901 * 110.99574 * 56.05363 * 10 9 8 32 32 H 1.09002 * 109.47233 * 64.37379 * 11 10 9 33 33 H 1.08998 * 109.47093 * 304.36952 * 11 10 9 34 34 H 0.97002 * 119.99505 * 355.40597 * 16 15 13 35 35 H 1.08998 * 117.50270 * 215.00321 * 21 12 11 36 36 H 1.08997 * 117.49716 * 0.02605 * 21 12 11 37 37 H 1.08993 * 117.50080 * 359.97438 * 22 12 11 38 38 H 1.09002 * 117.49911 * 144.97448 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7103 1.2305 6 7 2.0197 -1.9891 1.4020 7 6 2.5033 -2.4477 2.5389 8 6 2.9385 -1.5024 3.3774 9 6 3.5337 -1.7338 4.7424 10 7 4.9886 -1.8968 4.6210 11 6 5.6042 -2.1254 5.9351 12 6 7.1256 -2.1812 5.7828 13 6 7.6461 -3.2357 4.8404 14 1 7.8639 -2.9820 3.8134 15 6 7.8442 -4.5242 5.2891 16 7 7.4480 -4.8689 6.4948 17 14 8.6756 -5.7805 4.1845 18 1 7.6487 -6.4850 3.3757 19 1 9.6299 -5.0899 3.2803 20 1 9.4093 -6.7653 5.0196 21 6 7.8920 -0.8591 5.8564 22 6 7.9714 -1.8558 7.0155 23 16 2.7006 0.0617 2.6020 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7211 -1.5954 -1.2328 28 1 2.5416 -3.5008 2.7750 29 1 3.1024 -2.6348 5.1789 30 1 3.3160 -0.8795 5.3833 31 1 5.4043 -1.1012 4.1601 32 1 5.2452 -3.0693 6.3453 33 1 5.3361 -1.3112 6.6085 34 1 7.0772 -4.2011 7.0928 35 1 8.7727 -0.7519 5.2233 36 1 7.3124 0.0505 6.0138 37 1 7.4440 -1.6014 7.9348 38 1 8.9042 -2.4046 7.1450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809658296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:32 Heat of formation + Delta-G solvation = 11.636594 kcal Electronic energy + Delta-G solvation = -19427.262275 eV Core-core repulsion = 16397.019442 eV Total energy + Delta-G solvation = -3030.242833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.91001 -37.59671 -37.21845 -34.87863 -31.87446 -31.74739 -30.05704 -26.85532 -25.26064 -24.53148 -23.18973 -22.47412 -21.24105 -19.65781 -19.25453 -18.37463 -16.96236 -16.53076 -15.46029 -15.35006 -14.91014 -14.56391 -14.36857 -13.98013 -13.81094 -13.67325 -13.38692 -12.80154 -12.57691 -12.36909 -12.22704 -12.01870 -11.56045 -11.43454 -11.12589 -10.85324 -10.75603 -10.71728 -10.45628 -10.06410 -9.64473 -9.58031 -9.28945 -8.82584 -8.51518 -8.39787 -8.24155 -7.74131 -6.25385 -3.95063 0.64860 1.26970 1.69764 2.82719 3.49854 3.52400 3.67829 3.83868 4.24095 4.57445 4.63385 4.68103 4.73418 4.98521 5.07143 5.17936 5.24929 5.38255 5.42732 5.53310 5.74345 5.76831 5.83523 5.96983 6.09172 6.22578 6.25100 6.31833 6.51850 6.61859 6.85690 7.21632 7.24876 7.31728 7.67154 7.71365 7.91969 8.35915 8.53968 8.97921 9.76405 11.14731 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.004017 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.194162 B = 6969.191006 C = 7651.241972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.189 3.811 3 H 0.115 0.885 4 O -0.548 6.548 5 C -0.002 4.002 6 N -0.463 5.463 7 C 0.050 3.950 8 C -0.194 4.194 9 C 0.133 3.867 10 N -0.656 5.656 11 C 0.103 3.897 12 C 0.026 3.974 13 C -0.547 4.547 14 H 0.051 0.949 15 C 0.026 3.974 16 N -0.913 5.913 17 Si 1.068 2.932 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.287 1.287 21 C -0.202 4.202 22 C -0.179 4.179 23 S 0.119 5.881 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.386 0.614 28 H 0.180 0.820 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.335 0.665 32 H 0.071 0.929 33 H -0.001 1.001 34 H 0.272 0.728 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 10.546 -7.648 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.126 3.874 3 H 0.133 0.867 4 O -0.353 6.353 5 C -0.281 4.281 6 N -0.178 5.178 7 C -0.101 4.101 8 C -0.315 4.315 9 C 0.001 3.999 10 N -0.287 5.287 11 C -0.026 4.026 12 C 0.025 3.975 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.178 4.178 16 N -0.548 5.548 17 Si 0.897 3.103 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.213 1.213 21 C -0.239 4.239 22 C -0.217 4.217 23 S 0.374 5.626 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.235 0.765 28 H 0.197 0.803 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.017 0.983 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.953 9.547 -8.168 18.045 hybrid contribution -0.668 1.064 0.995 1.603 sum -13.621 10.611 -7.172 18.696 Atomic orbital electron populations 1.22474 0.94330 1.03675 1.03140 1.20376 0.93383 0.94695 0.78945 0.86749 1.86552 1.77424 1.30157 1.41202 1.27858 1.04646 0.93608 1.01942 1.66090 1.17859 1.11956 1.21868 1.21704 0.99062 1.01483 0.87874 1.26016 1.08041 0.93997 1.03462 1.20332 0.90603 1.00732 0.88237 1.60336 0.99625 1.46061 1.22676 1.21646 0.95851 0.98249 0.86871 1.19143 0.88106 0.93738 0.96488 1.21105 1.46222 0.94813 0.96363 0.93033 1.25662 0.95493 0.97943 0.98736 1.70719 1.39028 1.37079 1.08004 0.83559 0.76347 0.75492 0.74895 1.21559 1.21649 1.21276 1.22909 1.03901 0.93424 1.03657 1.22760 1.03292 1.03800 0.91858 1.83847 1.56790 1.10933 1.11074 0.91306 0.90715 0.91341 0.76460 0.80345 0.89016 0.94979 0.84689 0.91097 0.98335 0.91705 0.90130 0.91965 0.91731 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.52 37.16 0.35 -0.99 16 2 C 0.19 1.86 4.10 -27.88 -0.11 1.74 16 3 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 4 O -0.55 -6.13 13.33 -35.23 -0.47 -6.60 16 5 C 0.00 -0.03 6.28 -13.46 -0.08 -0.11 16 6 N -0.46 -6.57 10.37 -11.86 -0.12 -6.69 16 7 C 0.05 0.74 11.25 -19.18 -0.22 0.52 16 8 C -0.19 -2.82 6.11 -35.92 -0.22 -3.04 16 9 C 0.13 2.05 6.21 -4.97 -0.03 2.02 16 10 N -0.66 -12.66 6.28 -115.05 -0.72 -13.38 16 11 C 0.10 2.19 5.50 -3.82 -0.02 2.17 16 12 C 0.03 0.62 1.06 -155.66 -0.16 0.46 16 13 C -0.55 -14.97 8.59 -34.44 -0.30 -15.27 16 14 H 0.05 1.46 7.82 -52.48 -0.41 1.05 16 15 C 0.03 0.73 5.39 -17.82 -0.10 0.64 16 16 N -0.91 -26.71 13.57 55.43 0.75 -25.96 16 17 Si 1.07 25.47 29.91 -169.99 -5.08 20.38 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 C -0.20 -4.30 9.94 -26.69 -0.27 -4.56 16 22 C -0.18 -4.06 8.76 -26.70 -0.23 -4.29 16 23 S 0.12 1.46 23.18 -107.50 -2.49 -1.03 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.39 3.61 8.90 45.56 0.41 4.01 16 28 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.34 6.39 8.67 -39.29 -0.34 6.05 16 32 H 0.07 1.66 7.75 -51.93 -0.40 1.26 16 33 H 0.00 -0.03 8.10 -51.93 -0.42 -0.45 16 34 H 0.27 7.83 6.14 -40.82 -0.25 7.58 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -30.60 337.51 -9.31 -39.91 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.87 Total: 9.01 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.39 Total: -20.72 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.09 Total: -46.04 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.47 Total: -6.60 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.49 Total: -1.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.60 -9.31 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809658296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.542 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds