Wall clock time and date at job start Tue Mar 31 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34515 * 125.79126 * 2 1 4 4 C 1.41379 * 106.83898 * 179.75723 * 3 2 1 5 5 C 1.34518 * 106.84240 * 0.37032 * 4 3 2 6 6 C 1.50697 * 125.79010 * 179.89494 * 5 4 3 7 7 H 1.09002 * 109.47120 * 359.71422 * 6 5 4 8 8 C 1.52997 * 109.47466 * 119.71669 * 6 5 4 9 9 C 1.50708 * 109.47025 * 239.71843 * 6 5 4 10 10 O 1.20826 * 119.99590 * 359.97438 * 9 6 5 11 11 O 1.34220 * 119.99853 * 179.97438 * 9 6 5 12 12 C 1.45204 * 116.99725 * 179.97438 * 11 9 6 13 13 C 1.53004 * 109.47115 * 179.97438 * 12 11 9 14 14 O 1.42907 * 109.47013 * 64.99986 * 13 12 11 15 15 C 1.42902 * 114.00079 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47038 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00104 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99755 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99870 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00006 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46824 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47067 * 119.99658 * 20 18 16 23 23 H 1.48496 * 109.47070 * 239.99732 * 20 18 16 24 24 O 1.34301 * 125.78443 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46539 * 300.00010 * 1 2 3 27 27 H 1.09001 * 109.47338 * 59.99269 * 1 2 3 28 28 H 1.07997 * 126.57645 * 0.02562 * 3 2 1 29 29 H 1.08004 * 126.57717 * 180.24226 * 4 3 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 8 6 5 31 31 H 1.09001 * 109.46832 * 299.99964 * 8 6 5 32 32 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 33 33 H 1.09002 * 109.47052 * 299.99428 * 12 11 9 34 34 H 1.08994 * 109.47473 * 60.00112 * 12 11 9 35 35 H 1.08996 * 109.47125 * 184.99879 * 13 12 11 36 36 H 1.08996 * 109.47595 * 305.00170 * 13 12 11 37 37 H 1.08999 * 109.47246 * 300.00529 * 15 14 13 38 38 H 1.09002 * 109.46694 * 59.99994 * 15 14 13 39 39 H 0.97006 * 119.99455 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0057 5 6 3.5814 -0.7123 0.0006 6 6 4.7705 -1.6380 0.0015 7 1 5.6885 -1.0502 0.0020 8 6 4.7292 -2.5202 1.2509 9 6 4.7314 -2.5074 -1.2289 10 8 3.8300 -2.3878 -2.0245 11 8 5.6977 -3.4144 -1.4407 12 6 5.5954 -4.2173 -2.6462 13 6 6.7772 -5.1866 -2.7153 14 8 6.6944 -6.1166 -1.6335 15 6 7.7567 -7.0721 -1.6057 16 6 7.5693 -7.9975 -0.4312 17 1 6.7238 -7.8687 0.2283 18 6 8.4779 -9.0081 -0.1981 19 7 9.5077 -9.1646 -1.0010 20 14 8.2453 -10.1558 1.2573 21 1 7.0180 -9.7712 1.9997 22 1 8.1125 -11.5522 0.7702 23 1 9.4207 -10.0558 2.1593 24 8 2.2924 -1.0895 0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.9666 2.1204 0.0004 29 1 4.5213 1.2432 0.0109 30 1 3.8112 -3.1079 1.2504 31 1 4.7575 -1.8913 2.1408 32 1 5.5891 -3.1901 1.2513 33 1 4.6629 -4.7815 -2.6289 34 1 5.6094 -3.5652 -3.5194 35 1 6.7493 -5.7266 -3.6617 36 1 7.7102 -4.6277 -2.6433 37 1 7.7487 -7.6512 -2.5291 38 1 8.7102 -6.5525 -1.5109 39 1 10.1467 -9.8758 -0.8371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815213428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:24 Heat of formation + Delta-G solvation = -130.072787 kcal Electronic energy + Delta-G solvation = -21528.753167 eV Core-core repulsion = 18017.319732 eV Total energy + Delta-G solvation = -3511.433435 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.77615 -40.34418 -37.14161 -36.05288 -34.60372 -33.29584 -32.77759 -31.38588 -30.02437 -26.96590 -26.67621 -24.69644 -22.54362 -22.20947 -21.92283 -21.13302 -19.98536 -17.64444 -17.15039 -16.58219 -16.42871 -16.22854 -15.77572 -15.31662 -14.78058 -14.58999 -14.23939 -14.00507 -13.56316 -13.35618 -13.18432 -13.06273 -12.93344 -12.70732 -12.35080 -12.22100 -11.97199 -11.72902 -11.65809 -11.44062 -10.92539 -10.88358 -10.74421 -10.39626 -10.30774 -10.05589 -9.98938 -9.12693 -8.89410 -8.45447 -8.22725 -6.13226 -4.14822 1.50341 2.23086 2.36592 2.68209 2.88729 3.28259 3.34800 3.41387 4.23359 4.31558 4.60788 4.66734 4.73809 4.79617 4.87151 4.95068 5.15413 5.19078 5.22120 5.23531 5.42943 5.45419 5.54661 5.58785 5.70390 5.78134 5.85306 5.90444 5.95027 6.05841 6.13186 6.36920 6.57061 7.04193 7.04793 7.38458 7.77032 7.81539 8.11261 8.50990 8.98147 9.50088 10.98373 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.002970 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.660797 B = 9426.072490 C = 9908.746532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.216 4.216 4 C -0.197 4.197 5 C 0.003 3.997 6 C 0.001 3.999 7 H 0.137 0.863 8 C -0.148 4.148 9 C 0.462 3.538 10 O -0.504 6.504 11 O -0.337 6.337 12 C 0.074 3.926 13 C 0.062 3.938 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.514 4.514 17 H 0.067 0.933 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 O -0.158 6.158 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.008 0.992 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.410 20.200 1.537 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.235 4.235 4 C -0.217 4.217 5 C -0.047 4.047 6 C -0.018 4.018 7 H 0.154 0.846 8 C -0.205 4.205 9 C 0.304 3.696 10 O -0.392 6.392 11 O -0.252 6.252 12 C 0.001 3.999 13 C -0.016 4.016 14 O -0.310 6.310 15 C 0.120 3.880 16 C -0.552 4.552 17 H 0.086 0.914 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.208 1.208 24 O -0.054 6.054 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.759 19.774 1.382 23.573 hybrid contribution 0.320 -0.457 0.209 0.596 sum -12.439 19.316 1.591 23.030 Atomic orbital electron populations 1.20310 0.85189 1.04152 1.03413 1.22475 0.94086 0.84199 1.05178 1.21483 0.92518 0.99344 1.10191 1.21515 0.98472 0.93243 1.08433 1.21502 0.82785 0.93470 1.06967 1.19499 0.94774 0.94230 0.93287 0.84561 1.21842 1.04749 0.99565 0.94315 1.23384 0.79899 0.79308 0.87040 1.90676 1.35000 1.67325 1.46168 1.86575 1.47733 1.46297 1.44632 1.23241 1.00816 0.91638 0.84225 1.22322 0.95978 0.90881 0.92388 1.87920 1.51570 1.44687 1.46872 1.20246 0.84602 0.85925 0.97258 1.21086 1.10308 1.12777 1.11031 0.91443 1.24956 0.94858 0.97530 0.97203 1.69975 1.13303 1.32772 1.37747 0.86275 0.78268 0.80118 0.81817 1.19444 1.20841 1.20807 1.83992 1.15935 1.34822 1.70628 0.90505 0.89714 0.89680 0.83481 0.83282 0.91476 0.90642 0.89230 0.90462 0.90417 0.91914 0.93139 0.97620 0.97467 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.42 36.01 0.38 -0.17 16 2 C -0.01 -0.10 7.32 -35.62 -0.26 -0.36 16 3 C -0.22 -2.28 10.81 -39.70 -0.43 -2.71 16 4 C -0.20 -2.19 10.78 -39.70 -0.43 -2.62 16 5 C 0.00 0.04 5.20 -35.63 -0.19 -0.14 16 6 C 0.00 0.01 3.23 -92.92 -0.30 -0.29 16 7 H 0.14 1.21 8.10 -51.93 -0.42 0.79 16 8 C -0.15 -1.66 9.11 37.16 0.34 -1.32 16 9 C 0.46 7.15 7.25 36.01 0.26 7.41 16 10 O -0.50 -9.05 15.55 -22.30 -0.35 -9.39 16 11 O -0.34 -5.61 10.09 -41.99 -0.42 -6.04 16 12 C 0.07 1.20 5.84 37.16 0.22 1.42 16 13 C 0.06 1.13 6.33 37.16 0.24 1.37 16 14 O -0.39 -9.43 10.30 -38.79 -0.40 -9.83 16 15 C 0.19 5.28 5.69 36.01 0.20 5.48 16 16 C -0.51 -15.10 9.43 -34.44 -0.32 -15.42 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 20 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 O -0.16 -2.24 10.35 -1.09 -0.01 -2.25 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 34 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 345.31 15.07 5.20 5.20 Total: -1.00 -34.74 345.31 -6.54 -41.28 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -5.88 Total: -3.86 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.39 Total: -5.84 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.18 Total: -27.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.74 -6.54 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.791 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds