Wall clock time and date at job start Tue Mar 31 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 C 1.50696 * 109.46789 * 180.02562 * 3 2 1 5 5 O 1.33630 * 125.80666 * 270.32309 * 4 3 2 6 6 C 1.34217 * 110.92467 * 180.13728 * 5 4 3 7 7 C 1.34160 * 109.14291 * 359.58202 * 6 5 4 8 8 C 1.36497 * 125.80966 * 89.99996 * 4 3 2 9 9 C 1.47236 * 127.20084 * 0.03250 * 8 4 3 10 10 O 1.21536 * 119.99774 * 359.97438 * 9 8 4 11 11 O 1.34768 * 119.99740 * 179.97438 * 9 8 4 12 12 C 1.45196 * 116.99741 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47161 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.46950 * 65.00503 * 13 12 11 15 15 C 1.42893 * 114.00239 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47401 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00338 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99693 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99949 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46928 * 90.00312 * 20 18 16 22 22 H 1.48500 * 109.47064 * 209.99726 * 20 18 16 23 23 H 1.48497 * 109.47214 * 329.99946 * 20 18 16 24 24 H 1.08998 * 109.46688 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47273 * 300.00019 * 1 2 3 26 26 H 1.08999 * 109.46650 * 60.00343 * 1 2 3 27 27 H 1.08991 * 109.47066 * 239.99765 * 2 1 3 28 28 H 1.09007 * 109.46929 * 119.99474 * 2 1 3 29 29 H 1.08997 * 109.47103 * 59.99407 * 3 2 1 30 30 H 1.08998 * 109.46437 * 299.99818 * 3 2 1 31 31 H 1.08002 * 125.43126 * 179.85527 * 6 5 4 32 32 H 1.08000 * 127.02223 * 180.28492 * 7 6 5 33 33 H 1.08996 * 109.47922 * 300.00727 * 12 11 9 34 34 H 1.09005 * 109.47014 * 60.00323 * 12 11 9 35 35 H 1.09010 * 109.47187 * 185.00239 * 13 12 11 36 36 H 1.08992 * 109.47582 * 305.00580 * 13 12 11 37 37 H 1.09005 * 109.47026 * 299.99840 * 15 14 13 38 38 H 1.09001 * 109.47385 * 59.99879 * 15 14 13 39 39 H 0.96993 * 120.00137 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.3293 1.4363 1.0828 6 6 5.6263 1.4413 0.7375 7 6 5.7254 1.4418 -0.6004 8 6 4.3452 1.4427 -1.1079 9 6 3.9143 1.4436 -2.5158 10 8 2.7301 1.4438 -2.7889 11 8 4.8333 1.4442 -3.5016 12 6 4.3363 1.4444 -4.8659 13 6 5.5172 1.4457 -5.8388 14 8 6.2477 0.2250 -5.7029 15 6 7.3771 0.1236 -6.5723 16 6 8.0688 -1.1959 -6.3456 17 1 7.6845 -1.8877 -5.6106 18 6 9.1929 -1.5196 -7.0755 19 7 9.6611 -0.6769 -7.9701 20 14 10.0505 -3.1549 -6.7939 21 1 9.4713 -4.1800 -7.6989 22 1 11.5010 -3.0082 -7.0763 23 1 9.8612 -3.5766 -5.3827 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 6.4577 1.4401 1.4269 32 1 6.6334 1.4411 -1.1852 33 1 3.7293 0.5545 -5.0318 34 1 3.7290 2.3344 -5.0312 35 1 5.1466 1.5355 -6.8600 36 1 6.1719 2.2877 -5.6146 37 1 7.0447 0.1858 -7.6086 38 1 8.0706 0.9383 -6.3637 39 1 10.4520 -0.9044 -8.4834 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815243884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:40 Heat of formation + Delta-G solvation = -136.547798 kcal Electronic energy + Delta-G solvation = -21531.615779 eV Core-core repulsion = 18019.901567 eV Total energy + Delta-G solvation = -3511.714212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.76730 -39.97302 -37.06439 -36.07511 -35.28002 -33.09143 -32.74645 -30.55795 -30.07543 -27.10197 -26.68189 -24.20503 -22.44297 -22.12328 -22.00065 -21.23250 -19.76288 -18.11912 -16.93202 -16.60955 -16.42647 -16.14763 -15.74856 -15.31152 -15.19834 -14.69617 -14.53776 -14.25693 -13.65766 -13.38663 -13.25356 -12.94366 -12.85247 -12.53936 -12.20239 -11.94712 -11.67710 -11.53088 -11.42068 -10.97898 -10.88998 -10.84546 -10.74778 -10.40301 -10.32472 -10.04554 -9.96891 -9.12920 -8.87488 -8.79321 -8.21227 -6.12156 -4.13761 1.07031 1.91096 2.51431 2.92531 3.09303 3.30054 3.34952 3.40666 4.26649 4.32585 4.60501 4.72385 4.74799 4.79725 4.84480 5.04667 5.21730 5.24424 5.25223 5.43809 5.46964 5.48262 5.55903 5.59129 5.70615 5.87849 5.89896 5.93762 5.96205 6.05118 6.11679 6.20101 6.60927 6.84567 7.05477 7.39784 7.78125 7.91506 8.12599 8.52784 8.99081 9.51016 10.99464 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.003278 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.681239 B = 8540.855672 C = 8949.332580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.050 4.050 4 C 0.086 3.914 5 O -0.172 6.172 6 C -0.048 4.048 7 C -0.161 4.161 8 C -0.226 4.226 9 C 0.539 3.461 10 O -0.518 6.518 11 O -0.333 6.333 12 C 0.076 3.924 13 C 0.062 3.938 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.515 4.515 17 H 0.067 0.933 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.271 1.271 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.211 0.789 32 H 0.167 0.833 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.839 6.517 17.076 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.087 4.087 4 C 0.034 3.966 5 O -0.068 6.068 6 C -0.114 4.114 7 C -0.180 4.180 8 C -0.229 4.229 9 C 0.385 3.615 10 O -0.410 6.410 11 O -0.248 6.248 12 C 0.002 3.998 13 C -0.016 4.016 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.553 4.553 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.736 3.264 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.228 0.772 32 H 0.185 0.815 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.153 6.385 17.233 23.196 hybrid contribution 0.927 -0.557 -0.508 1.194 sum -13.226 5.829 16.725 22.105 Atomic orbital electron populations 1.21734 0.94801 1.02082 1.02053 1.21471 0.96465 0.94719 1.02869 1.20547 0.83295 0.99630 1.05237 1.22813 0.93774 0.96994 0.83067 1.83770 1.17357 1.71195 1.34510 1.23926 0.83230 1.07693 0.96505 1.23060 0.97049 1.03737 0.94171 1.20270 0.94179 1.17626 0.90821 1.19917 0.83760 0.72394 0.85432 1.90788 1.18003 1.47533 1.84635 1.86667 1.38655 1.83169 1.16340 1.23226 0.96903 1.02575 0.77082 1.22325 0.92874 0.90501 0.95898 1.87922 1.44041 1.34864 1.64226 1.20234 0.82051 0.97524 0.88175 1.21056 1.10523 1.02010 1.21700 0.91511 1.24950 0.96783 0.97851 0.94916 1.69960 1.23859 1.35913 1.24097 0.86326 0.78369 0.82957 0.78794 1.20443 1.21059 1.19594 0.92326 0.92684 0.92135 0.91048 0.91749 0.89734 0.86860 0.77232 0.81545 0.90427 0.90382 0.91887 0.93204 0.97619 0.97501 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.12 5.92 -26.72 -0.16 -1.28 16 3 C -0.05 -0.50 5.22 -27.88 -0.15 -0.64 16 4 C 0.09 1.05 6.63 -34.94 -0.23 0.82 16 5 O -0.17 -1.92 10.52 7.70 0.08 -1.84 16 6 C -0.05 -0.48 12.03 29.30 0.35 -0.13 16 7 C -0.16 -2.03 11.05 -37.44 -0.41 -2.44 16 8 C -0.23 -3.24 6.32 -103.29 -0.65 -3.89 16 9 C 0.54 8.81 7.95 34.39 0.27 9.08 16 10 O -0.52 -8.63 14.64 -19.29 -0.28 -8.92 16 11 O -0.33 -5.93 10.10 -43.46 -0.44 -6.37 16 12 C 0.08 1.24 5.85 37.16 0.22 1.46 16 13 C 0.06 1.15 6.33 37.16 0.24 1.38 16 14 O -0.39 -9.62 10.30 -38.79 -0.40 -10.02 16 15 C 0.19 5.36 5.69 36.01 0.20 5.57 16 16 C -0.51 -15.30 9.43 -34.44 -0.32 -15.63 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 20 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.11 1.23 6.48 -51.93 -0.34 0.90 16 31 H 0.21 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -33.61 343.92 -6.31 -39.92 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -5.80 Total: -3.72 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.37 Total: -4.96 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.04 Total: -27.14 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.61 -6.31 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815243884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.623 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds