Wall clock time and date at job start Tue Mar 31 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46852 * 2 1 4 4 C 1.50696 * 109.47040 * 120.00427 * 2 1 3 5 5 O 1.33630 * 125.80666 * 300.32588 * 4 2 1 6 6 C 1.34217 * 110.92467 * 180.13728 * 5 4 2 7 7 C 1.34160 * 109.14291 * 359.58202 * 6 5 4 8 8 C 1.36497 * 125.80966 * 120.00275 * 4 2 1 9 9 C 1.47236 * 127.20084 * 0.03250 * 8 4 2 10 10 O 1.21536 * 119.99774 * 359.97438 * 9 8 4 11 11 O 1.34768 * 119.99740 * 179.97438 * 9 8 4 12 12 C 1.45196 * 116.99741 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47161 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.46950 * 65.00503 * 13 12 11 15 15 C 1.42893 * 114.00239 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47401 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00338 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99693 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99949 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47050 * 60.00149 * 20 18 16 22 22 H 1.48502 * 109.46792 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47339 * 299.99734 * 20 18 16 24 24 H 1.09004 * 109.46779 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47208 * 299.99980 * 1 2 3 26 26 H 1.09001 * 109.46999 * 60.00433 * 1 2 3 27 27 H 1.09001 * 109.47075 * 240.00260 * 2 1 3 28 28 H 1.08999 * 109.47216 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47789 * 299.99994 * 3 2 1 30 30 H 1.09001 * 109.47068 * 60.00256 * 3 2 1 31 31 H 1.08002 * 125.43126 * 179.85527 * 6 5 4 32 32 H 1.08000 * 127.02223 * 180.28492 * 7 6 5 33 33 H 1.08996 * 109.47922 * 300.00727 * 12 11 9 34 34 H 1.09005 * 109.47014 * 60.00323 * 12 11 9 35 35 H 1.09010 * 109.47187 * 185.00239 * 13 12 11 36 36 H 1.08992 * 109.47582 * 305.00580 * 13 12 11 37 37 H 1.09005 * 109.47026 * 299.99840 * 15 14 13 38 38 H 1.09001 * 109.47385 * 59.99879 * 15 14 13 39 39 H 0.96993 * 120.00137 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.7770 -0.3602 2.4944 6 6 2.3759 -1.1987 3.3545 7 6 3.0402 -2.1373 2.6634 8 6 2.8204 -1.8249 1.2433 9 6 3.3414 -2.5603 0.0790 10 8 3.0758 -2.1843 -1.0458 11 8 4.1128 -3.6504 0.2606 12 6 4.5907 -4.3259 -0.9325 13 6 5.4438 -5.5304 -0.5295 14 8 4.6263 -6.4886 0.1456 15 6 5.3296 -7.6591 0.5663 16 6 4.3757 -8.5956 1.2621 17 1 3.3363 -8.3238 1.3723 18 6 4.8300 -9.7988 1.7589 19 7 6.0959 -10.1296 1.6250 20 14 3.6476 -10.9592 2.6219 21 1 2.5609 -11.3448 1.6861 22 1 4.3786 -12.1757 3.0590 23 1 3.0633 -10.2799 3.8061 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 2.3270 -1.1314 4.4313 32 1 3.6178 -2.9555 3.0675 33 1 3.7400 -4.6643 -1.5239 34 1 5.1929 -3.6362 -1.5239 35 1 5.8751 -5.9849 -1.4215 36 1 6.2437 -5.2032 0.1346 37 1 5.7582 -8.1576 -0.3031 38 1 6.1275 -7.3764 1.2530 39 1 6.4156 -10.9759 1.9748 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815243972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:41 Heat of formation + Delta-G solvation = -133.601282 kcal Electronic energy + Delta-G solvation = -21631.079925 eV Core-core repulsion = 18119.493483 eV Total energy + Delta-G solvation = -3511.586442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.79302 -39.99475 -37.08633 -36.17014 -35.50335 -33.10167 -32.74587 -30.13616 -29.29230 -27.46520 -26.95695 -24.62028 -22.71089 -22.43316 -22.01477 -20.93881 -19.65900 -18.04140 -16.90461 -16.62080 -16.41792 -16.14992 -15.75218 -15.22440 -15.02581 -14.73587 -14.52354 -14.26867 -13.57675 -13.40674 -13.26747 -12.89077 -12.85132 -12.50283 -12.49064 -11.94722 -11.59101 -11.52978 -11.43350 -11.29022 -10.92700 -10.83072 -10.74682 -10.36766 -10.27744 -10.04426 -9.96725 -9.14028 -8.87083 -8.80317 -8.21050 -6.11880 -4.13616 1.07386 1.91334 2.51093 2.92192 3.08872 3.32216 3.34626 3.38794 4.19302 4.32570 4.55454 4.68216 4.74928 4.79184 4.83853 5.11228 5.24440 5.24633 5.32107 5.32771 5.47534 5.48793 5.50940 5.62437 5.65717 5.81852 5.87764 5.92020 5.93822 5.97733 6.12577 6.20769 6.60885 6.86443 7.05492 7.39879 7.77984 7.89773 8.12729 8.52879 8.98860 9.51086 10.99684 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.003261 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.413156 B = 8583.961750 C = 9190.570788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.146 4.146 4 C 0.094 3.906 5 O -0.170 6.170 6 C -0.049 4.049 7 C -0.161 4.161 8 C -0.228 4.228 9 C 0.541 3.459 10 O -0.520 6.520 11 O -0.332 6.332 12 C 0.075 3.925 13 C 0.062 3.938 14 O -0.391 6.391 15 C 0.195 3.805 16 C -0.516 4.516 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.909 3.091 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.211 0.789 32 H 0.167 0.833 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 22.259 -0.839 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.056 4.056 3 C -0.203 4.203 4 C 0.041 3.959 5 O -0.066 6.066 6 C -0.114 4.114 7 C -0.180 4.180 8 C -0.231 4.231 9 C 0.387 3.613 10 O -0.412 6.412 11 O -0.247 6.247 12 C 0.002 3.998 13 C -0.016 4.016 14 O -0.311 6.311 15 C 0.121 3.879 16 C -0.554 4.554 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.736 3.264 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.185 0.815 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.033 22.431 -1.001 23.530 hybrid contribution 0.070 -1.102 0.461 1.197 sum -6.963 21.329 -0.540 22.443 Atomic orbital electron populations 1.21851 0.93121 1.02780 1.02635 1.20365 0.96905 0.96479 0.91816 1.21844 1.01618 0.94167 1.02656 1.22809 0.94974 0.93653 0.84464 1.83747 1.59347 1.48646 1.14816 1.23929 0.99745 0.92176 0.95576 1.23049 1.02851 1.01315 0.90757 1.20263 1.09339 1.00375 0.93121 1.19924 0.75471 0.78496 0.87375 1.90740 1.57627 1.67551 1.25304 1.86669 1.61079 1.38747 1.38219 1.23240 0.98990 0.92622 0.84986 1.22325 0.93187 0.88755 0.97326 1.87922 1.36432 1.30787 1.75921 1.20229 0.92878 0.80967 0.93871 1.21019 0.96284 1.01582 1.36501 0.91558 1.24947 0.95548 0.97783 0.96191 1.69950 1.14098 1.23441 1.46345 0.86381 0.80527 0.79595 0.79893 1.19996 1.21143 1.19974 0.92016 0.92108 0.91249 0.85234 0.92166 0.91255 0.92122 0.77240 0.81541 0.90390 0.90345 0.91864 0.93192 0.97612 0.97511 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.18 37.16 0.34 -0.92 16 2 C -0.04 -0.39 3.25 -91.77 -0.30 -0.69 16 3 C -0.15 -1.19 9.17 37.15 0.34 -0.85 16 4 C 0.09 1.16 5.88 -34.94 -0.21 0.95 16 5 O -0.17 -1.90 10.52 7.70 0.08 -1.82 16 6 C -0.05 -0.49 12.03 29.30 0.35 -0.14 16 7 C -0.16 -2.03 11.05 -37.44 -0.41 -2.45 16 8 C -0.23 -3.30 6.32 -103.29 -0.65 -3.95 16 9 C 0.54 8.93 7.95 34.39 0.27 9.21 16 10 O -0.52 -8.81 14.30 -19.29 -0.28 -9.08 16 11 O -0.33 -5.93 10.10 -43.46 -0.44 -6.37 16 12 C 0.08 1.24 5.85 37.16 0.22 1.45 16 13 C 0.06 1.15 6.33 37.16 0.24 1.38 16 14 O -0.39 -9.62 10.30 -38.79 -0.40 -10.02 16 15 C 0.19 5.37 5.69 36.01 0.20 5.58 16 16 C -0.52 -15.34 9.43 -34.44 -0.32 -15.66 16 17 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 20 Si 0.91 21.94 29.54 -169.99 -5.02 16.91 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.13 1.55 5.53 -51.93 -0.29 1.27 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -33.63 342.41 -5.93 -39.57 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.75 Total: -3.61 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.03 Total: -4.54 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -1.03 Total: -27.29 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.63 -5.93 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815243972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.036 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds