Wall clock time and date at job start Tue Mar 31 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36009 * 116.99924 * 2 1 4 4 C 1.38514 * 120.06492 * 0.02562 * 3 2 1 5 5 C 1.38452 * 119.99400 * 179.97438 * 4 3 2 6 6 F 1.35109 * 119.93599 * 179.97438 * 5 4 3 7 7 C 1.38445 * 120.12989 * 359.97438 * 5 4 3 8 8 C 1.38236 * 120.13626 * 359.72372 * 7 5 4 9 9 C 1.38697 * 120.00089 * 0.55895 * 8 7 5 10 10 N 1.40107 * 120.06773 * 179.71737 * 9 8 7 11 11 N 1.40105 * 119.99566 * 359.72384 * 10 9 8 12 12 C 1.34777 * 119.99775 * 179.72176 * 11 10 9 13 13 O 1.21283 * 120.00222 * 0.28016 * 12 11 10 14 14 C 1.50703 * 120.00290 * 180.27576 * 12 11 10 15 15 C 1.52990 * 109.47398 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47398 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99463 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00445 * 180.02562 * 16 15 14 19 19 N 1.31524 * 120.00004 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00395 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46989 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46903 * 119.99599 * 20 18 16 23 23 H 1.48498 * 109.47416 * 240.00014 * 20 18 16 24 24 H 1.09005 * 109.46896 * 299.99780 * 1 2 3 25 25 H 1.08996 * 109.47600 * 59.99648 * 1 2 3 26 26 H 1.08998 * 109.46690 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00488 * 359.95511 * 4 3 2 28 28 H 1.08002 * 119.92904 * 180.02562 * 7 5 4 29 29 H 1.07996 * 120.00154 * 180.27408 * 8 7 5 30 30 H 0.97000 * 120.00590 * 179.72176 * 10 9 8 31 31 H 0.97001 * 120.00437 * 0.02562 * 11 10 9 32 32 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 33 33 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 34 34 H 1.08998 * 109.47508 * 300.00200 * 15 14 12 35 35 H 1.09011 * 109.47182 * 60.00188 * 15 14 12 36 36 H 0.96991 * 119.99897 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2934 2.3744 0.0005 5 6 1.9234 3.6072 0.0011 6 9 1.1877 4.7404 0.0011 7 6 3.3059 3.6811 0.0016 8 6 4.0628 2.5244 0.0074 9 6 3.4374 1.2864 0.0009 10 7 4.2031 0.1131 0.0008 11 7 5.6021 0.1897 0.0013 12 6 6.3388 -0.9389 0.0068 13 8 5.7907 -2.0208 0.0062 14 6 7.8435 -0.8566 0.0137 15 6 8.4316 -2.2689 0.0184 16 6 9.9363 -2.1866 0.0259 17 1 10.4244 -1.2231 0.0267 18 6 10.6899 -3.3411 0.0306 19 7 10.0956 -4.5144 0.0290 20 14 12.5551 -3.2391 0.0391 21 1 12.9729 -1.8140 0.0402 22 1 13.0819 -3.9097 1.2549 23 1 13.0933 -3.9123 -1.1702 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2148 2.3192 0.0002 28 1 3.7940 4.6445 0.0024 29 1 5.1410 2.5846 0.0123 30 1 3.7648 -0.7522 0.0003 31 1 6.0405 1.0550 0.0021 32 1 8.1824 -0.3252 -0.8757 33 1 8.1741 -0.3219 0.9042 34 1 8.0928 -2.8006 0.9075 35 1 8.1010 -2.8032 -0.8725 36 1 10.6258 -5.3266 0.0320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846641663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:17 Heat of formation + Delta-G solvation = -84.704700 kcal Electronic energy + Delta-G solvation = -20927.590851 eV Core-core repulsion = 17326.957170 eV Total energy + Delta-G solvation = -3600.633681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.76801 -41.45585 -40.61065 -38.52115 -36.76861 -35.55202 -33.49610 -32.47297 -31.41976 -29.30946 -28.07590 -27.37171 -24.29245 -23.52126 -22.90579 -21.59673 -19.66944 -19.01493 -18.84940 -18.28640 -17.45471 -16.96848 -16.88032 -16.59365 -16.55482 -16.42342 -16.24979 -15.58053 -15.28138 -14.88652 -14.67195 -14.24099 -13.93653 -13.92390 -13.68420 -13.23936 -12.85397 -12.57581 -12.48057 -12.43269 -12.33693 -11.92002 -11.88850 -11.64501 -11.27966 -10.98061 -10.56144 -10.31803 -9.68594 -8.16501 -8.08782 -6.29979 0.15237 0.27728 0.92066 1.45206 1.45799 1.59137 1.60723 2.23962 2.44287 2.57622 3.14201 3.17472 3.36136 3.63794 3.91084 4.00935 4.08363 4.33409 4.39061 4.42206 4.50424 4.56369 4.67173 4.73105 4.96975 5.02036 5.06104 5.19147 5.52848 5.59056 5.64365 5.73909 5.87188 6.17187 6.21457 6.38278 6.68574 6.89447 7.36312 7.40561 8.96414 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.002846 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.825131 B = 9834.570455 C =10650.626720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.078 3.922 4 C -0.191 4.191 5 C 0.062 3.938 6 F -0.147 7.147 7 C -0.125 4.125 8 C -0.143 4.143 9 C 0.173 3.827 10 N -0.548 5.548 11 N -0.511 5.511 12 C 0.511 3.489 13 O -0.587 6.587 14 C -0.106 4.106 15 C 0.040 3.960 16 C -0.539 4.539 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.973 3.027 21 H -0.250 1.250 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.160 0.840 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.430 0.570 31 H 0.436 0.564 32 H 0.115 0.885 33 H 0.116 0.884 34 H -0.016 1.016 35 H -0.016 1.016 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.633 19.532 -0.061 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.028 3.972 4 C -0.211 4.211 5 C 0.041 3.959 6 F -0.125 7.125 7 C -0.144 4.144 8 C -0.167 4.167 9 C 0.070 3.930 10 N -0.274 5.274 11 N -0.260 5.260 12 C 0.299 3.701 13 O -0.464 6.464 14 C -0.147 4.147 15 C 0.003 3.997 16 C -0.577 4.577 17 H 0.099 0.901 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.797 3.203 21 H -0.173 1.173 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.178 0.822 28 H 0.180 0.820 29 H 0.175 0.825 30 H 0.272 0.728 31 H 0.282 0.718 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.002 0.998 35 H 0.003 0.997 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.744 18.463 -0.063 25.607 hybrid contribution 0.228 -0.402 0.005 0.462 sum -17.516 18.060 -0.059 25.159 Atomic orbital electron populations 1.23347 0.76020 1.05537 1.02499 1.86050 1.23822 1.25867 1.89396 1.18087 0.89418 0.85396 1.04294 1.21026 1.01659 0.89963 1.08428 1.17306 0.89606 0.81445 1.07569 1.91470 1.77373 1.49219 1.94488 1.21033 0.91270 1.00243 1.01888 1.20421 1.01141 0.88583 1.06554 1.17477 0.87187 0.86742 1.01610 1.43365 0.93128 1.07356 1.83596 1.44935 0.94328 1.10384 1.76317 1.21757 0.90876 0.82443 0.75020 1.90688 1.74175 1.29945 1.51639 1.21614 0.86000 1.01098 1.05949 1.18722 0.94743 0.91296 0.94984 1.21744 0.92021 0.93515 1.50400 0.90144 1.26129 1.04616 0.95029 0.94781 1.70186 1.37660 0.98362 1.51684 0.85283 0.78485 0.79161 0.77364 1.17349 1.20886 1.20873 0.91344 0.91332 0.86786 0.82232 0.81979 0.82489 0.72801 0.71840 0.86648 0.86640 0.99753 0.99749 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.28 9.74 -93.65 -0.91 -8.19 16 3 C 0.08 1.67 6.70 22.59 0.15 1.82 16 4 C -0.19 -3.39 9.01 22.39 0.20 -3.19 16 5 C 0.06 1.13 7.30 22.37 0.16 1.29 16 6 F -0.15 -2.80 17.26 44.97 0.78 -2.03 16 7 C -0.13 -1.96 10.02 22.32 0.22 -1.73 16 8 C -0.14 -2.46 9.48 22.38 0.21 -2.25 16 9 C 0.17 3.89 6.74 38.18 0.26 4.15 16 10 N -0.55 -15.02 6.46 -51.00 -0.33 -15.35 16 11 N -0.51 -13.60 6.22 -173.53 -1.08 -14.68 16 12 C 0.51 18.80 7.95 87.66 0.70 19.50 16 13 O -0.59 -28.00 15.82 -3.04 -0.05 -28.05 16 14 C -0.11 -3.89 5.64 29.85 0.17 -3.72 16 15 C 0.04 2.16 4.26 29.85 0.13 2.29 16 16 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 17 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 18 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 19 N -0.94 -58.81 13.29 21.45 0.28 -58.52 16 20 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H 0.07 0.68 7.66 -2.38 -0.02 0.66 16 25 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.16 2.11 6.30 -2.91 -0.02 2.09 16 28 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.16 1.89 6.20 -2.91 -0.02 1.87 16 30 H 0.43 13.57 7.36 -213.32 -1.57 12.00 16 31 H 0.44 7.85 6.61 -213.32 -1.41 6.44 16 32 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 34 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 35 H -0.02 -0.97 8.10 -2.38 -0.02 -0.99 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -76.94 317.66 2.88 -74.06 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -1.85 Total: 17.13 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.01 Total: -9.83 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -1.12 Total: -88.55 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.96 Total: -36.24 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -76.94 2.88 -74.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846641663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.640 kcal (2) G-P(sol) polarization free energy of solvation -76.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds