Wall clock time and date at job start Tue Mar 31 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35351 * 117.00128 * 2 1 4 4 C 1.36143 * 125.57184 * 179.97438 * 3 2 1 5 5 C 1.39835 * 107.19099 * 179.97438 * 4 3 2 6 6 C 1.37953 * 106.66941 * 359.97438 * 5 4 3 7 7 C 1.41617 * 126.03623 * 179.97438 * 6 5 4 8 8 O 1.21698 * 120.00350 * 0.02562 * 7 6 5 9 9 O 1.34984 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.42906 * 116.99829 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46809 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47056 * 299.99772 * 11 10 9 13 13 C 1.52998 * 109.47129 * 60.00251 * 11 10 9 14 14 C 1.53009 * 109.47013 * 179.97438 * 11 10 9 15 15 C 1.50692 * 109.46865 * 180.02562 * 14 11 10 16 16 H 1.07997 * 120.00723 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99880 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99632 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00377 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46908 * 60.00048 * 19 17 15 21 21 H 1.48504 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47224 * 300.00177 * 19 17 15 23 23 O 1.34000 * 125.56651 * 359.97438 * 3 2 1 24 24 H 1.08998 * 109.46541 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47152 * 299.99798 * 1 2 3 26 26 H 1.09000 * 109.46865 * 60.00126 * 1 2 3 27 27 H 1.07997 * 126.40632 * 0.02562 * 4 3 2 28 28 H 1.07999 * 126.66267 * 179.73985 * 5 4 3 29 29 H 1.08999 * 109.47125 * 300.00387 * 10 9 7 30 30 H 1.08996 * 109.46930 * 60.00077 * 10 9 7 31 31 H 1.08999 * 109.47174 * 60.00322 * 12 11 10 32 32 H 1.09005 * 109.46835 * 180.02562 * 12 11 10 33 33 H 1.08997 * 109.47220 * 299.99773 * 12 11 10 34 34 H 1.08995 * 109.47492 * 60.00057 * 13 11 10 35 35 H 1.09005 * 109.47143 * 180.02562 * 13 11 10 36 36 H 1.08999 * 109.46965 * 299.99594 * 13 11 10 37 37 H 1.08994 * 109.46676 * 300.00118 * 14 11 10 38 38 H 1.08996 * 109.46722 * 59.99811 * 14 11 10 39 39 H 0.97004 * 119.99939 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 3.3898 1.4089 0.0005 5 6 3.5994 2.7914 -0.0003 6 6 2.3521 3.3808 -0.0019 7 6 2.0880 4.7721 -0.0026 8 8 3.0099 5.5665 -0.0023 9 8 0.8136 5.2172 -0.0036 10 6 0.6210 6.6332 -0.0048 11 6 -0.8771 6.9440 -0.0052 12 6 -1.5228 6.3403 -1.2540 13 6 -1.5230 6.3426 1.2445 14 6 -1.0833 8.4601 -0.0059 15 6 -2.5588 8.7662 -0.0056 16 1 -3.2777 7.9602 -0.0054 17 6 -2.9913 10.0755 -0.0067 18 7 -2.1159 11.0571 -0.0074 19 14 -4.8203 10.4551 -0.0071 20 1 -5.4472 9.8712 1.2059 21 1 -5.0205 11.9265 -0.0076 22 1 -5.4472 9.8692 -1.2192 23 8 1.4262 2.3953 -0.0005 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.1531 0.6449 0.0006 28 1 4.5526 3.2992 0.0037 29 1 1.0808 7.0632 0.8850 30 1 1.0816 7.0617 -0.8949 31 1 -1.3759 5.2603 -1.2531 32 1 -2.5901 6.5622 -1.2545 33 1 -1.0627 6.7689 -2.1443 34 1 -1.0630 6.7726 2.1341 35 1 -2.5904 6.5636 1.2440 36 1 -1.3761 5.2625 1.2455 37 1 -0.6233 8.8897 0.8839 38 1 -0.6230 8.8889 -0.8960 39 1 -2.4201 11.9782 -0.0086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847701942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:32 Heat of formation + Delta-G solvation = -121.806555 kcal Electronic energy + Delta-G solvation = -22098.905322 eV Core-core repulsion = 18587.830338 eV Total energy + Delta-G solvation = -3511.074984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.09048 -40.26565 -38.90806 -37.29423 -35.47858 -33.52157 -32.33777 -30.34915 -27.99613 -27.16131 -26.40860 -26.30695 -23.84736 -22.65290 -22.29291 -20.64690 -19.16781 -18.36366 -17.88912 -17.46366 -16.56040 -16.21619 -16.13535 -15.70503 -15.10433 -14.56727 -13.97033 -13.64510 -13.60605 -13.35106 -13.20475 -13.10864 -12.55748 -12.42398 -12.38057 -12.04952 -11.92522 -11.28033 -10.95451 -10.88519 -10.78831 -10.59366 -10.37205 -10.32437 -10.26427 -10.21284 -9.72530 -9.22075 -8.95197 -8.46421 -8.36123 -6.00524 -4.01721 0.62622 1.89632 2.00714 2.70867 2.93368 3.10889 3.32695 3.37674 3.39585 4.44158 4.45319 4.65495 4.74496 4.90887 4.96078 5.17018 5.28046 5.34983 5.48490 5.50812 5.51929 5.82339 5.91974 5.99709 6.19676 6.21878 6.38086 6.51699 6.58308 6.70978 6.73243 6.77453 7.10938 7.11757 7.13815 7.61354 7.73481 7.85709 7.98055 8.40004 9.02358 9.61200 11.11124 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.003460 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.004439 B = 8089.890368 C = 8861.223354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.261 6.261 3 C 0.228 3.772 4 C -0.246 4.246 5 C -0.065 4.065 6 C -0.086 4.086 7 C 0.546 3.454 8 O -0.495 6.495 9 O -0.337 6.337 10 C 0.076 3.924 11 C -0.058 4.058 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.035 3.965 15 C -0.511 4.511 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 O -0.173 6.173 24 H 0.112 0.888 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 -21.505 0.015 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.175 6.175 3 C 0.130 3.870 4 C -0.266 4.266 5 C -0.084 4.084 6 C -0.134 4.134 7 C 0.392 3.608 8 O -0.387 6.387 9 O -0.253 6.253 10 C 0.002 3.998 11 C -0.058 4.058 12 C -0.183 4.183 13 C -0.183 4.183 14 C -0.002 4.002 15 C -0.549 4.549 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 O -0.072 6.072 24 H 0.130 0.870 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.185 0.815 28 H 0.190 0.810 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.719 -21.161 0.016 22.524 hybrid contribution -1.103 0.463 -0.001 1.196 sum 6.616 -20.697 0.014 21.729 Atomic orbital electron populations 1.23248 0.76053 1.05106 1.03315 1.86403 1.23640 1.18667 1.88761 1.20951 0.89658 0.78522 0.97896 1.20800 0.92116 0.96777 1.16873 1.22095 0.97533 0.92655 0.96154 1.19738 0.86937 0.85808 1.20961 1.17908 0.82619 0.85928 0.74295 1.90964 1.45672 1.54807 1.47228 1.86256 1.27126 1.28971 1.82907 1.23192 0.99530 0.74991 1.02081 1.20822 0.88864 1.00048 0.96067 1.21716 1.01855 0.98170 0.96575 1.21716 1.01854 0.98173 0.96570 1.19121 0.97441 0.86086 0.97516 1.21116 0.91630 0.91693 1.50438 0.92157 1.25012 0.97466 0.96516 0.95486 1.69958 1.33530 0.99225 1.50778 0.86677 0.85736 0.77121 0.78578 1.20275 1.21373 1.20271 1.84114 1.37114 1.13888 1.72091 0.87000 0.91379 0.91386 0.81512 0.80992 0.91552 0.91549 0.94306 0.91549 0.93705 0.93699 0.91548 0.94318 0.96288 0.96290 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.74 101.05 1.09 1.19 16 2 O -0.26 -2.38 10.55 -40.98 -0.43 -2.81 16 3 C 0.23 2.47 7.86 29.98 0.24 2.70 16 4 C -0.25 -2.37 10.89 -39.74 -0.43 -2.80 16 5 C -0.06 -0.71 10.58 -39.09 -0.41 -1.13 16 6 C -0.09 -1.20 7.00 -38.40 -0.27 -1.47 16 7 C 0.55 9.05 7.73 32.02 0.25 9.30 16 8 O -0.50 -9.04 16.57 -19.42 -0.32 -9.36 16 9 O -0.34 -5.96 8.75 -44.03 -0.39 -6.34 16 10 C 0.08 1.44 4.24 37.16 0.16 1.59 16 11 C -0.06 -1.19 0.61 -154.50 -0.09 -1.28 16 12 C -0.13 -2.44 8.08 37.16 0.30 -2.13 16 13 C -0.13 -2.43 8.07 37.16 0.30 -2.13 16 14 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 15 C -0.51 -13.79 7.65 -34.44 -0.26 -14.06 16 16 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 O -0.17 -2.26 10.14 -22.42 -0.23 -2.49 16 24 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 30 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 31 H 0.04 0.67 7.68 -51.93 -0.40 0.28 16 32 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 36 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -31.22 335.05 -5.53 -36.74 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.57 Total: -3.30 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 0.64 Total: -7.96 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -1.37 Total: -21.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.22 -5.53 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847701942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.064 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds