Wall clock time and date at job start Tue Mar 31 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 C 1.53000 * 109.47198 * 239.99717 * 2 1 3 5 5 O 1.45201 * 109.47170 * 119.99723 * 2 1 3 6 6 C 1.34230 * 117.00111 * 60.00006 * 5 2 1 7 7 O 1.20828 * 119.99904 * 0.02562 * 6 5 2 8 8 C 1.50693 * 120.00240 * 179.97438 * 6 5 2 9 9 C 1.50700 * 110.91629 * 300.70192 * 8 6 5 10 10 O 1.21213 * 119.99758 * 236.03144 * 9 8 6 11 11 O 1.34307 * 119.99699 * 56.30884 * 9 8 6 12 12 C 1.34923 * 117.00000 * 179.72351 * 11 9 8 13 13 H 1.08007 * 119.99533 * 0.02562 * 12 11 9 14 14 C 1.38749 * 120.00389 * 179.97438 * 12 11 9 15 15 N 1.31438 * 119.99878 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00141 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46919 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46750 * 120.00372 * 16 14 12 19 19 H 1.48497 * 109.46768 * 240.00292 * 16 14 12 20 20 C 1.54636 * 111.07056 * 64.69285 * 8 6 5 21 21 C 1.51104 * 104.72731 * 93.41261 * 20 8 6 22 22 C 1.30531 * 111.10437 * 16.43445 * 21 20 8 23 23 C 1.51106 * 111.10054 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47221 * 300.00367 * 1 2 3 25 25 H 1.09002 * 109.46970 * 59.99867 * 1 2 3 26 26 H 1.08991 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47113 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47227 * 299.99976 * 3 2 1 29 29 H 1.09000 * 109.47293 * 59.99677 * 3 2 1 30 30 H 1.08999 * 109.47079 * 300.00370 * 4 2 1 31 31 H 1.09002 * 109.46820 * 60.00324 * 4 2 1 32 32 H 1.09000 * 109.47177 * 180.02562 * 4 2 1 33 33 H 0.96996 * 120.00334 * 179.97438 * 15 14 12 34 34 H 1.08998 * 110.39118 * 212.22345 * 20 8 6 35 35 H 1.09003 * 110.38717 * 334.60607 * 20 8 6 36 36 H 1.07997 * 124.45080 * 196.46358 * 21 20 8 37 37 H 1.07995 * 124.45293 * 180.02562 * 22 21 20 38 38 H 1.08998 * 110.38290 * 224.74922 * 23 22 21 39 39 H 1.08997 * 110.38688 * 102.37485 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6534 -1.9684 1.3380 7 8 0.9567 -2.5028 0.5079 8 6 2.1183 -2.7436 2.5437 9 6 3.6233 -2.7895 2.6063 10 8 4.1956 -3.8569 2.6544 11 8 4.3301 -1.6475 2.6144 12 6 5.6733 -1.7588 2.6773 13 1 6.1328 -2.7354 2.7181 14 6 6.4642 -0.6189 2.6887 15 7 5.9050 0.5695 2.6387 16 14 8.3239 -0.7732 2.7752 17 1 8.6997 -2.2091 2.8216 18 1 8.9292 -0.1421 1.5751 19 1 8.8208 -0.0912 3.9971 20 6 1.5262 -2.1550 3.8453 21 6 0.2677 -2.9544 4.0907 22 6 0.2635 -4.0527 3.3854 23 6 1.5189 -4.1692 2.5526 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 6.4578 1.3664 2.6470 34 1 2.2247 -2.2833 4.6722 35 1 1.2859 -1.1004 3.7102 36 1 -0.5247 -2.6559 4.7612 37 1 -0.5326 -4.7824 3.3957 38 1 1.2737 -4.4839 1.5382 39 1 2.2150 -4.8715 3.0112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849941963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:47 Heat of formation + Delta-G solvation = -145.065478 kcal Electronic energy + Delta-G solvation = -23839.031046 eV Core-core repulsion = 20326.947479 eV Total energy + Delta-G solvation = -3512.083566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93835 -39.25291 -37.81262 -36.24667 -35.09575 -33.71473 -32.18531 -30.00745 -27.99945 -27.17178 -27.06868 -25.43918 -23.62438 -21.96283 -20.16976 -18.83961 -18.50803 -17.77279 -17.43935 -16.35850 -16.23570 -15.46074 -15.19559 -14.67881 -14.36642 -14.23312 -13.86504 -13.40910 -13.15687 -12.73105 -12.49199 -12.16626 -12.03733 -11.97269 -11.92237 -11.62651 -11.55430 -11.53192 -11.30299 -11.18580 -11.11348 -10.94787 -10.82627 -10.44041 -10.41198 -10.00277 -9.86222 -9.65975 -9.04592 -8.72913 -8.60133 -6.43083 -4.10790 2.38694 2.48743 2.88708 3.11542 3.17718 3.24747 3.53418 3.87238 4.40489 4.55009 4.82336 4.93734 5.01660 5.05483 5.14694 5.21096 5.37528 5.63948 5.68889 5.75317 5.80090 5.92060 5.98422 6.01320 6.07353 6.08673 6.13604 6.19331 6.25000 6.36399 6.51081 6.55704 6.62032 6.70171 6.92956 7.02659 7.36053 7.89830 8.21827 8.61625 9.04057 9.79061 10.72997 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.007649 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.138297 B = 3659.810037 C = 4921.208948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.116 3.884 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.315 6.315 6 C 0.493 3.507 7 O -0.506 6.506 8 C -0.045 4.045 9 C 0.406 3.594 10 O -0.544 6.544 11 O -0.188 6.188 12 C -0.385 4.385 13 H 0.096 0.904 14 C 0.047 3.953 15 N -0.851 5.851 16 Si 0.940 3.060 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.275 1.275 20 C -0.078 4.078 21 C -0.175 4.175 22 C -0.154 4.154 23 C -0.079 4.079 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.269 0.731 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 0.213 -1.994 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.080 3.920 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.230 6.230 6 C 0.336 3.664 7 O -0.396 6.396 8 C -0.048 4.048 9 C 0.251 3.749 10 O -0.442 6.442 11 O -0.094 6.094 12 C -0.461 4.461 13 H 0.114 0.886 14 C -0.159 4.159 15 N -0.487 5.487 16 Si 0.764 3.236 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.115 4.115 21 C -0.193 4.193 22 C -0.172 4.172 23 C -0.115 4.115 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.605 0.096 -2.265 10.845 hybrid contribution 0.831 0.036 -0.068 0.834 sum -9.774 0.132 -2.333 10.050 Atomic orbital electron populations 1.22487 0.94596 1.04352 1.02328 1.22152 0.93664 0.92765 0.83407 1.21795 1.03430 0.92173 1.02128 1.22471 1.02418 1.02638 0.96413 1.86773 1.68371 1.23971 1.43912 1.22680 0.76499 0.81153 0.86083 1.90497 1.35967 1.70271 1.42836 1.20962 0.92656 0.97242 0.93914 1.22033 0.88193 0.84166 0.80474 1.90564 1.71015 1.31325 1.51273 1.83942 1.20978 1.30551 1.73928 1.21329 0.77290 0.95106 1.52346 0.88614 1.25318 1.00378 0.94126 0.96064 1.70026 1.35994 0.97386 1.45275 0.85665 0.80729 0.79032 0.78168 1.18915 1.20153 1.20098 1.21310 0.95311 1.00376 0.94520 1.23238 0.98050 0.96998 1.00971 1.23244 0.97847 0.98185 0.97921 1.21329 0.95000 0.93144 1.02064 0.92137 0.91423 0.90016 0.90513 0.91101 0.91583 0.90157 0.91514 0.91524 0.92145 0.88611 0.89289 0.85214 0.85239 0.89022 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.37 37.16 0.31 -2.24 16 2 C 0.12 1.95 1.13 -90.62 -0.10 1.84 16 3 C -0.14 -2.08 8.85 37.16 0.33 -1.75 16 4 C -0.18 -2.96 8.37 37.16 0.31 -2.65 16 5 O -0.31 -6.49 9.22 -42.02 -0.39 -6.88 16 6 C 0.49 9.99 5.89 36.00 0.21 10.20 16 7 O -0.51 -10.02 11.02 -18.75 -0.21 -10.22 16 8 C -0.05 -0.92 0.87 -155.09 -0.13 -1.05 16 9 C 0.41 10.24 6.52 36.01 0.23 10.48 16 10 O -0.54 -14.69 14.74 -19.05 -0.28 -14.97 16 11 O -0.19 -5.33 9.15 -23.47 -0.21 -5.55 16 12 C -0.38 -11.22 9.65 30.92 0.30 -10.92 16 13 H 0.10 2.83 6.86 -52.48 -0.36 2.47 16 14 C 0.05 1.28 5.49 -17.53 -0.10 1.19 16 15 N -0.85 -24.09 13.67 55.48 0.76 -23.33 16 16 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 20 C -0.08 -1.35 5.92 -26.82 -0.16 -1.51 16 21 C -0.17 -2.46 10.78 -35.70 -0.38 -2.85 16 22 C -0.15 -2.20 10.78 -35.70 -0.38 -2.59 16 23 C -0.08 -1.39 5.55 -26.82 -0.15 -1.53 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.27 5.89 -51.93 -0.31 0.97 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.41 5.89 -51.93 -0.31 1.11 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.10 1.70 7.88 -51.93 -0.41 1.29 16 35 H 0.09 1.51 7.82 -51.93 -0.41 1.10 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.09 1.61 6.97 -51.93 -0.36 1.25 16 39 H 0.11 1.95 6.96 -51.93 -0.36 1.59 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -32.15 326.52 -5.60 -37.75 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.45 Total: 5.75 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 0.29 Total: -3.38 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.76 Total: -23.33 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.09 Total: -37.62 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.15 -5.60 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849941963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.318 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds