Wall clock time and date at job start Tue Mar 31 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 C 1.53000 * 109.47198 * 239.99717 * 2 1 3 5 5 O 1.45201 * 109.47170 * 119.99723 * 2 1 3 6 6 C 1.34230 * 117.00111 * 60.00006 * 5 2 1 7 7 O 1.20828 * 119.99904 * 0.02562 * 6 5 2 8 8 C 1.50693 * 120.00240 * 179.97438 * 6 5 2 9 9 C 1.50700 * 110.91629 * 300.70192 * 8 6 5 10 10 O 1.21213 * 119.99758 * 236.03144 * 9 8 6 11 11 O 1.34307 * 119.99699 * 56.30884 * 9 8 6 12 12 C 1.34923 * 117.00000 * 179.72351 * 11 9 8 13 13 H 1.08007 * 119.99533 * 0.02562 * 12 11 9 14 14 C 1.38749 * 120.00389 * 179.97438 * 12 11 9 15 15 N 1.31438 * 119.99878 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00141 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46919 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46750 * 120.00372 * 16 14 12 19 19 H 1.48497 * 109.46768 * 240.00292 * 16 14 12 20 20 C 1.54636 * 111.07056 * 64.69285 * 8 6 5 21 21 C 1.51104 * 104.72731 * 93.41261 * 20 8 6 22 22 C 1.30531 * 111.10437 * 16.43445 * 21 20 8 23 23 C 1.51106 * 111.10054 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47221 * 300.00367 * 1 2 3 25 25 H 1.09002 * 109.46970 * 59.99867 * 1 2 3 26 26 H 1.08991 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47113 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47227 * 299.99976 * 3 2 1 29 29 H 1.09000 * 109.47293 * 59.99677 * 3 2 1 30 30 H 1.08999 * 109.47079 * 300.00370 * 4 2 1 31 31 H 1.09002 * 109.46820 * 60.00324 * 4 2 1 32 32 H 1.09000 * 109.47177 * 180.02562 * 4 2 1 33 33 H 0.96996 * 120.00334 * 179.97438 * 15 14 12 34 34 H 1.08998 * 110.39118 * 212.22345 * 20 8 6 35 35 H 1.09003 * 110.38717 * 334.60607 * 20 8 6 36 36 H 1.07997 * 124.45080 * 196.46358 * 21 20 8 37 37 H 1.07995 * 124.45293 * 180.02562 * 22 21 20 38 38 H 1.08998 * 110.38290 * 224.74922 * 23 22 21 39 39 H 1.08997 * 110.38688 * 102.37485 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6534 -1.9684 1.3380 7 8 0.9567 -2.5028 0.5079 8 6 2.1183 -2.7436 2.5437 9 6 3.6233 -2.7895 2.6063 10 8 4.1956 -3.8569 2.6544 11 8 4.3301 -1.6475 2.6144 12 6 5.6733 -1.7588 2.6773 13 1 6.1328 -2.7354 2.7181 14 6 6.4642 -0.6189 2.6887 15 7 5.9050 0.5695 2.6387 16 14 8.3239 -0.7732 2.7752 17 1 8.6997 -2.2091 2.8216 18 1 8.9292 -0.1421 1.5751 19 1 8.8208 -0.0912 3.9971 20 6 1.5262 -2.1550 3.8453 21 6 0.2677 -2.9544 4.0907 22 6 0.2635 -4.0527 3.3854 23 6 1.5189 -4.1692 2.5526 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 6.4578 1.3664 2.6470 34 1 2.2247 -2.2833 4.6722 35 1 1.2859 -1.1004 3.7102 36 1 -0.5247 -2.6559 4.7612 37 1 -0.5326 -4.7824 3.3957 38 1 1.2737 -4.4839 1.5382 39 1 2.2150 -4.8715 3.0112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849941963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:46 Heat of formation + Delta-G solvation = -163.136468 kcal Electronic energy + Delta-G solvation = -23839.814663 eV Core-core repulsion = 20326.947479 eV Total energy + Delta-G solvation = -3512.867183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.51415 -41.07089 -39.41351 -37.73674 -37.16323 -35.10310 -34.32710 -31.48800 -29.37061 -28.40062 -28.28569 -27.54887 -25.08026 -23.80224 -21.66639 -20.40227 -19.95757 -19.75146 -19.22048 -17.77813 -17.73372 -17.30452 -16.75909 -16.42887 -16.24184 -15.86867 -15.29614 -14.98989 -14.67521 -14.10534 -14.00241 -13.83651 -13.48921 -13.30002 -13.19071 -13.16508 -13.10787 -12.94111 -12.85958 -12.61194 -12.49716 -12.44212 -12.27152 -12.16336 -12.13470 -11.97760 -11.39049 -11.31096 -10.93401 -10.70399 -9.93812 -8.54276 -6.34735 0.80591 1.18168 1.28235 1.33593 1.44557 1.50853 1.75612 2.05732 2.55447 2.95481 3.09378 3.44795 3.55793 3.73120 3.79621 3.95229 4.18321 4.21724 4.43442 4.53218 4.59412 4.62731 4.64075 4.73112 4.74431 4.79786 4.82634 4.84176 4.90458 5.00743 5.10005 5.13889 5.23339 5.28345 5.44438 5.48968 5.78253 5.91634 6.50220 6.68778 6.88137 7.66960 8.64145 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.007649 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.138297 B = 3659.810037 C = 4921.208948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 C -0.132 4.132 4 C -0.178 4.178 5 O -0.341 6.341 6 C 0.492 3.508 7 O -0.504 6.504 8 C -0.054 4.054 9 C 0.404 3.596 10 O -0.570 6.570 11 O -0.211 6.211 12 C -0.428 4.428 13 H 0.080 0.920 14 C 0.006 3.994 15 N -0.882 5.882 16 Si 1.012 2.988 17 H -0.267 1.267 18 H -0.260 1.260 19 H -0.257 1.257 20 C -0.080 4.080 21 C -0.163 4.163 22 C -0.149 4.149 23 C -0.079 4.079 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.039 0.961 33 H 0.279 0.721 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.088 0.912 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.090 0.935 -2.090 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.064 3.936 3 C -0.189 4.189 4 C -0.235 4.235 5 O -0.257 6.257 6 C 0.335 3.665 7 O -0.393 6.393 8 C -0.056 4.056 9 C 0.251 3.749 10 O -0.468 6.468 11 O -0.117 6.117 12 C -0.503 4.503 13 H 0.098 0.902 14 C -0.197 4.197 15 N -0.518 5.518 16 Si 0.831 3.169 17 H -0.191 1.191 18 H -0.184 1.184 19 H -0.181 1.181 20 C -0.117 4.117 21 C -0.181 4.181 22 C -0.167 4.167 23 C -0.116 4.116 24 H 0.086 0.914 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.188 0.812 37 H 0.186 0.814 38 H 0.106 0.894 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.084 0.826 -2.365 12.341 hybrid contribution 1.265 -0.175 -0.096 1.281 sum -10.819 0.651 -2.461 11.115 Atomic orbital electron populations 1.22405 0.92044 1.03953 1.04302 1.22638 0.95754 0.93081 0.82144 1.21813 1.01330 0.91594 1.04187 1.22442 1.00697 1.02264 0.98084 1.86756 1.68946 1.24144 1.45874 1.22558 0.76678 0.81309 0.85934 1.90484 1.36057 1.70310 1.42477 1.21181 0.88930 0.99633 0.95896 1.23049 0.90329 0.83175 0.78396 1.90522 1.72341 1.31975 1.52008 1.83966 1.20920 1.31971 1.74826 1.21504 0.78155 0.95283 1.55357 0.90245 1.26452 1.05517 0.93241 0.94478 1.70100 1.38365 0.98247 1.45042 0.84653 0.73781 0.79090 0.79372 1.19086 1.18448 1.18098 1.21369 0.96842 1.01048 0.92483 1.23385 0.97128 0.96021 1.01524 1.23388 0.97022 0.99284 0.96960 1.21360 0.96515 0.91037 1.02698 0.91395 0.88199 0.91505 0.93713 0.87133 0.91385 0.91779 0.87777 0.94130 0.91125 0.89799 0.89239 0.81158 0.81350 0.89389 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 8.37 71.98 0.60 -3.83 16 2 C 0.10 3.26 1.13 -10.79 -0.01 3.25 16 3 C -0.13 -3.87 8.85 71.98 0.64 -3.23 16 4 C -0.18 -5.74 8.37 71.98 0.60 -5.14 16 5 O -0.34 -14.41 9.22 -48.78 -0.45 -14.86 16 6 C 0.49 20.33 5.89 71.23 0.42 20.75 16 7 O -0.50 -19.98 11.02 21.96 0.24 -19.73 16 8 C -0.05 -2.25 0.87 -52.56 -0.05 -2.29 16 9 C 0.40 21.45 6.52 71.24 0.46 21.91 16 10 O -0.57 -32.46 14.74 20.76 0.31 -32.16 16 11 O -0.21 -12.57 9.15 17.52 0.16 -12.41 16 12 C -0.43 -26.13 9.65 67.94 0.66 -25.48 16 13 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16 14 C 0.01 0.32 5.49 84.87 0.47 0.78 16 15 N -0.88 -50.96 13.67 21.62 0.30 -50.67 16 16 Si 1.01 43.20 29.55 68.60 2.03 45.22 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 C -0.08 -2.78 5.92 30.53 0.18 -2.60 16 21 C -0.16 -4.18 10.78 26.26 0.28 -3.90 16 22 C -0.15 -3.89 10.78 26.26 0.28 -3.60 16 23 C -0.08 -2.80 5.55 30.54 0.17 -2.63 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 1.96 5.89 -2.39 -0.01 1.95 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 2.26 5.89 -2.39 -0.01 2.25 16 31 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.08 3.07 7.88 -2.39 -0.02 3.05 16 35 H 0.09 3.05 7.82 -2.39 -0.02 3.03 16 36 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.09 3.12 6.97 -2.39 -0.02 3.10 16 39 H 0.09 3.48 6.96 -2.39 -0.02 3.47 16 Total: -1.00 -73.74 326.52 8.34 -65.41 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 1.05 Total: 25.20 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 4.71 Total: -6.00 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.30 Total: -50.67 kcal Atomic # 8 Polarization: -79.42 SS G_CDS: 0.26 Total: -79.16 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.74 8.34 -65.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849941963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.728 kcal (2) G-P(sol) polarization free energy of solvation -73.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds