Wall clock time and date at job start Tue Mar 31 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35945 * 117.00116 * 2 1 4 4 C 1.38729 * 120.02845 * 359.97438 * 3 2 1 5 5 C 1.38133 * 119.96433 * 180.02562 * 4 3 2 6 6 C 1.38474 * 120.03188 * 0.02562 * 5 4 3 7 7 F 1.35103 * 119.96722 * 179.97438 * 6 5 4 8 8 C 1.38428 * 120.06178 * 359.97438 * 6 5 4 9 9 C 1.50696 * 119.98386 * 179.97438 * 8 6 5 10 10 N 1.46506 * 109.47148 * 284.99858 * 9 8 6 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 8 12 12 O 1.21586 * 120.00012 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99940 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00211 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47426 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99731 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00455 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99724 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47267 * 60.00069 * 19 17 15 21 21 H 1.48504 * 109.47216 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47508 * 299.99995 * 19 17 15 23 23 C 1.38171 * 120.03265 * 0.25861 * 8 6 5 24 24 H 1.09002 * 109.46869 * 59.99881 * 1 2 3 25 25 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47012 * 300.00396 * 1 2 3 27 27 H 1.07997 * 120.01778 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.97712 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47545 * 165.00329 * 9 8 6 30 30 H 1.08998 * 109.47669 * 45.00272 * 9 8 6 31 31 H 0.97005 * 119.99811 * 0.02562 * 10 9 8 32 32 H 0.97004 * 120.00041 * 359.97438 * 13 11 10 33 33 H 1.08998 * 109.47182 * 299.99924 * 14 13 11 34 34 H 1.09001 * 109.47115 * 59.99869 * 14 13 11 35 35 H 0.96993 * 120.00031 * 179.97438 * 18 17 15 36 36 H 1.07992 * 120.01787 * 179.72354 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 -0.0005 5 6 1.9198 3.6052 -0.0011 6 6 3.3027 3.6769 -0.0016 7 9 3.9160 4.8806 -0.0027 8 6 4.0572 2.5163 -0.0011 9 6 5.5620 2.5963 -0.0022 10 7 6.0297 2.9780 -1.3371 11 6 7.3490 3.1172 -1.5746 12 8 8.1511 2.9256 -0.6812 13 7 7.7793 3.4688 -2.8025 14 6 9.2134 3.6196 -3.0609 15 6 9.4259 4.0143 -4.4997 16 1 8.5774 4.1406 -5.1559 17 6 10.7033 4.2152 -4.9781 18 7 11.7365 4.0619 -4.1788 19 14 10.9666 4.7051 -6.7613 20 1 10.2771 5.9930 -7.0278 21 1 12.4203 4.8578 -7.0232 22 1 10.4118 3.6532 -7.6508 23 6 3.4312 1.2845 -0.0054 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2127 2.3195 -0.0014 28 1 1.3322 4.5114 -0.0019 29 1 5.9778 1.6246 0.2643 30 1 5.8869 3.3419 0.7235 31 1 5.3896 3.1347 -2.0489 32 1 7.1394 3.6213 -3.5154 33 1 9.6210 4.3915 -2.4081 34 1 9.7192 2.6741 -2.8654 35 1 12.6351 4.2028 -4.5154 36 1 4.0201 0.3793 -0.0095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856889700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:46 Heat of formation + Delta-G solvation = -90.602398 kcal Electronic energy + Delta-G solvation = -21005.740876 eV Core-core repulsion = 17404.851452 eV Total energy + Delta-G solvation = -3600.889424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.95598 -40.49747 -39.15735 -37.74448 -34.74511 -33.93740 -32.33838 -31.55170 -30.20415 -27.72161 -27.31690 -25.63698 -23.16041 -22.52073 -21.48632 -20.14365 -18.48911 -17.85796 -17.58296 -17.26026 -16.25605 -16.06588 -15.76765 -15.39291 -15.12590 -14.71322 -14.61106 -14.50335 -13.84015 -13.57503 -13.25719 -13.15825 -12.94481 -12.75308 -12.56585 -12.10038 -11.89937 -11.63780 -11.27096 -11.12657 -10.93363 -10.83198 -10.26156 -9.62505 -9.33846 -9.24161 -8.75378 -8.63863 -8.41205 -7.70438 -6.10779 -4.17155 0.70855 0.89508 2.81413 3.08761 3.29162 3.33543 3.35220 3.63178 3.99508 4.04075 4.28636 4.32468 4.37374 4.59209 4.68928 4.71821 4.95646 5.02242 5.07840 5.19204 5.25070 5.41219 5.60858 5.73650 5.79656 5.83821 6.03479 6.33565 6.83428 6.94401 7.16278 7.56858 7.59922 7.62883 7.95473 8.09151 8.81260 8.99117 9.37936 9.52871 10.99518 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.002935 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.676865 B = 9536.233421 C = 9665.249699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.115 3.885 4 C -0.177 4.177 5 C -0.116 4.116 6 C 0.080 3.920 7 F -0.131 7.131 8 C -0.095 4.095 9 C 0.184 3.816 10 N -0.753 5.753 11 C 0.695 3.305 12 O -0.600 6.600 13 N -0.729 5.729 14 C 0.267 3.733 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.276 1.276 23 C -0.104 4.104 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.392 0.608 32 H 0.386 0.614 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.025 -5.186 8.165 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.069 3.931 4 C -0.196 4.196 5 C -0.135 4.135 6 C 0.060 3.940 7 F -0.109 7.109 8 C -0.096 4.096 9 C 0.059 3.941 10 N -0.410 5.410 11 C 0.395 3.605 12 O -0.479 6.479 13 N -0.381 5.381 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.225 0.775 32 H 0.218 0.782 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.879 -5.498 8.992 27.019 hybrid contribution -0.657 0.808 -1.600 1.908 sum -25.535 -4.690 7.393 26.995 Atomic orbital electron populations 1.23099 0.78165 1.04230 1.01415 1.86114 1.21512 1.26379 1.88678 1.18972 0.92174 0.84435 0.97474 1.21106 1.00410 0.91363 1.06729 1.20933 0.92562 0.98827 1.01188 1.17478 0.90554 0.80628 1.05384 1.91549 1.83209 1.42295 1.93879 1.19856 0.96359 0.91495 1.01938 1.19813 0.86530 1.02103 0.85624 1.45105 1.06406 1.77332 1.12206 1.16098 0.81532 0.78693 0.84199 1.90873 1.53598 1.58798 1.44666 1.45703 1.11358 1.72098 1.08892 1.18978 0.73295 0.97253 0.95865 1.21200 0.92836 1.48796 0.95176 0.92014 1.24945 0.95692 0.95118 0.98291 1.69972 0.98728 1.48061 1.35577 0.86469 0.77174 0.79045 0.84153 1.20111 1.21096 1.20113 1.20261 0.91366 0.97780 1.02879 0.92486 0.88033 0.92536 0.84495 0.84272 0.90272 0.90390 0.77515 0.78161 0.95713 0.95711 0.92432 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.71 10.50 -19.57 -0.21 -2.92 16 3 C 0.11 1.06 6.69 -39.23 -0.26 0.80 16 4 C -0.18 -1.37 9.04 -39.44 -0.36 -1.73 16 5 C -0.12 -1.01 10.02 -39.53 -0.40 -1.41 16 6 C 0.08 0.89 7.24 -39.42 -0.29 0.60 16 7 F -0.13 -1.73 16.75 2.25 0.04 -1.69 16 8 C -0.09 -1.08 5.25 -104.58 -0.55 -1.63 16 9 C 0.18 2.57 5.48 -5.19 -0.03 2.54 16 10 N -0.75 -12.08 5.55 -66.41 -0.37 -12.45 16 11 C 0.70 14.98 8.57 -86.92 -0.74 14.23 16 12 O -0.60 -15.46 16.34 5.29 0.09 -15.38 16 13 N -0.73 -16.22 5.55 -66.42 -0.37 -16.59 16 14 C 0.27 7.35 5.43 -5.20 -0.03 7.32 16 15 C -0.54 -15.06 9.28 -34.44 -0.32 -15.38 16 16 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 19 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 C -0.10 -1.05 9.61 -39.44 -0.38 -1.43 16 24 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 25 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 27 H 0.14 0.69 6.30 -52.49 -0.33 0.36 16 28 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.08 1.09 7.95 -51.93 -0.41 0.68 16 30 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 31 H 0.39 5.33 8.48 -40.82 -0.35 4.98 16 32 H 0.39 7.40 8.34 -40.82 -0.34 7.06 16 33 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.14 1.36 8.00 -52.49 -0.42 0.94 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -34.44 321.56 -7.00 -41.45 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.29 Total: 5.69 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -2.45 Total: 6.71 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.00 Total: -54.90 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.12 Total: -18.29 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.44 -7.00 -41.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856889700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.157 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds