Wall clock time and date at job start Tue Mar 31 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38606 * 120.77987 * 2 1 4 4 C 1.38353 * 119.14970 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 119.63404 * 179.97438 * 4 3 2 6 6 N 1.31977 * 120.73084 * 0.02562 * 4 3 2 7 7 C 1.31882 * 121.71007 * 359.97438 * 6 4 3 8 8 C 1.50697 * 119.61150 * 179.97438 * 7 6 4 9 9 N 1.46907 * 109.46886 * 275.00275 * 8 7 6 10 10 C 1.46899 * 110.99495 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47039 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.46722 * 304.99519 * 11 10 9 13 13 C 1.53002 * 109.47082 * 64.99745 * 11 10 9 14 14 C 1.53002 * 109.47358 * 184.99616 * 11 10 9 15 15 C 1.50696 * 109.46919 * 174.99744 * 14 11 10 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 C 1.38185 * 120.77610 * 0.26092 * 7 6 4 24 24 H 1.08998 * 109.47385 * 89.99420 * 1 2 3 25 25 H 1.09006 * 109.46822 * 209.99823 * 1 2 3 26 26 H 1.09004 * 109.46691 * 329.99077 * 1 2 3 27 27 H 1.07998 * 120.42924 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.47189 * 155.00083 * 8 7 6 29 29 H 1.09000 * 109.47286 * 34.99824 * 8 7 6 30 30 H 1.00896 * 110.99778 * 56.04796 * 9 8 7 31 31 H 1.08995 * 109.48028 * 59.99869 * 10 9 8 32 32 H 1.09001 * 109.47280 * 299.99463 * 10 9 8 33 33 H 1.08994 * 109.47199 * 60.00238 * 13 11 10 34 34 H 1.09000 * 109.47048 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.46743 * 300.00081 * 13 11 10 36 36 H 1.09000 * 109.46497 * 55.00010 * 14 11 10 37 37 H 1.08999 * 109.46623 * 295.00074 * 14 11 10 38 38 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 39 39 H 1.08005 * 120.40175 * 179.72173 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2164 1.1908 0.0000 4 6 3.5994 1.1515 -0.0005 5 17 4.5003 2.6353 -0.0012 6 7 4.2412 -0.0017 -0.0016 7 6 3.5980 -1.1531 -0.0016 8 6 4.3787 -2.4421 -0.0034 9 7 4.7340 -2.7974 -1.3838 10 6 5.4971 -4.0520 -1.4246 11 6 5.8487 -4.3881 -2.8752 12 1 4.9378 -4.4139 -3.4732 13 6 6.7940 -3.3212 -3.4312 14 6 6.5338 -5.7551 -2.9304 15 6 6.7694 -6.1412 -4.3679 16 1 6.4610 -5.4782 -5.1626 17 6 7.3778 -7.3415 -4.6684 18 7 7.7476 -8.1517 -3.7007 19 14 7.6692 -7.8205 -6.4503 20 1 8.9985 -7.3218 -6.8858 21 1 7.6290 -9.2994 -6.5783 22 1 6.6118 -7.2210 -7.3034 23 6 2.2167 -1.1913 -0.0060 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6963 2.1373 0.0004 28 1 3.7707 -3.2357 0.4311 29 1 5.2877 -2.3172 0.5851 30 1 5.2433 -2.0494 -1.8300 31 1 4.8966 -4.8566 -1.0002 32 1 6.4138 -3.9387 -0.8459 33 1 7.7048 -3.2955 -2.8332 34 1 7.0441 -3.5604 -4.4648 35 1 6.3059 -2.3474 -3.3919 36 1 5.8968 -6.5002 -2.4537 37 1 7.4884 -5.7044 -2.4065 38 1 7.5960 -7.9032 -2.7754 39 1 1.6962 -2.1377 -0.0105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877498000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:30 Heat of formation + Delta-G solvation = -2.323006 kcal Electronic energy + Delta-G solvation = -18974.245967 eV Core-core repulsion = 15941.354094 eV Total energy + Delta-G solvation = -3032.891873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69224 -37.23296 -36.84128 -34.80419 -33.94687 -32.37286 -30.89612 -28.34061 -26.90024 -26.37361 -24.44248 -23.36855 -22.29326 -21.23438 -19.23989 -17.32540 -16.80340 -16.70571 -16.11125 -15.54988 -15.16653 -14.35845 -14.25410 -13.70901 -13.59190 -13.49732 -13.31923 -13.01723 -12.97532 -12.48575 -12.09401 -11.93459 -11.77427 -11.62374 -11.53441 -11.32725 -11.00296 -10.68592 -10.26880 -10.07534 -9.91698 -9.86441 -9.82139 -9.45648 -9.17168 -8.46156 -8.28859 -8.26060 -6.30498 -3.98467 0.63772 0.82138 1.53709 3.26036 3.46471 3.50159 3.65761 3.95909 4.19767 4.54611 4.57494 4.62096 4.66456 4.78616 5.01317 5.13518 5.19642 5.29537 5.45350 5.45940 5.59614 5.63314 5.67534 5.76531 5.88705 5.97387 6.16471 6.21007 6.37595 6.47702 6.80468 7.02935 7.04847 7.19618 7.43906 7.45439 7.53109 7.63359 8.29060 8.52988 8.94891 9.72885 11.10080 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.002820 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.814709 B = 9926.217332 C =10370.152698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.031 4.031 3 C -0.162 4.162 4 C 0.181 3.819 5 Cl -0.036 7.036 6 N -0.480 5.480 7 C 0.161 3.839 8 C 0.105 3.895 9 N -0.683 5.683 10 C 0.064 3.936 11 C -0.077 4.077 12 H 0.067 0.933 13 C -0.134 4.134 14 C 0.015 3.985 15 C -0.594 4.594 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 1.070 2.930 20 H -0.289 1.289 21 H -0.285 1.285 22 H -0.289 1.289 23 C -0.150 4.150 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.143 0.857 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.345 0.655 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.006 0.994 37 H 0.005 0.995 38 H 0.268 0.732 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 19.523 10.309 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.039 4.039 3 C -0.183 4.183 4 C 0.017 3.983 5 Cl -0.007 7.007 6 N -0.192 5.192 7 C 0.023 3.977 8 C -0.024 4.024 9 N -0.316 5.316 10 C -0.065 4.065 11 C -0.096 4.096 12 H 0.085 0.915 13 C -0.191 4.191 14 C -0.022 4.022 15 C -0.632 4.632 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.554 5.554 19 Si 0.898 3.102 20 H -0.216 1.216 21 H -0.211 1.211 22 H -0.215 1.215 23 C -0.170 4.170 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.161 0.839 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.994 18.151 9.214 24.149 hybrid contribution -0.444 1.754 1.339 2.251 sum -13.438 19.905 10.553 26.233 Atomic orbital electron populations 1.20848 0.89347 1.03635 1.03412 1.20334 0.97165 0.92122 0.94264 1.21673 0.92442 0.99799 1.04419 1.21550 0.88800 0.88490 0.99507 1.98407 1.76546 1.29267 1.96489 1.66786 1.41691 0.97235 1.13483 1.21114 0.91261 0.92181 0.93101 1.20852 0.98343 0.91098 0.92151 1.60644 1.49786 1.06916 1.14263 1.22186 0.94900 0.90306 0.99069 1.21088 0.98763 0.97254 0.92482 0.91480 1.21733 0.98452 0.96607 1.02327 1.19238 0.94547 0.90679 0.97774 1.22062 1.42785 1.06358 0.91989 0.93164 1.25823 0.93991 0.93307 1.05971 1.70748 1.45378 1.38259 1.00967 0.83534 0.76211 0.76140 0.74275 1.21562 1.21080 1.21496 1.21978 0.94551 0.99217 1.01292 0.89979 0.90518 0.90799 0.83920 0.89087 0.93188 0.83607 0.91291 0.95518 0.94011 0.91705 0.94835 0.97564 0.97637 0.92150 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.06 36.01 0.36 -0.26 16 2 C -0.03 -0.27 5.92 -104.32 -0.62 -0.88 16 3 C -0.16 -1.49 9.59 -39.40 -0.38 -1.87 16 4 C 0.18 2.11 7.27 -17.45 -0.13 1.98 16 5 Cl -0.04 -0.38 29.11 -51.86 -1.51 -1.89 16 6 N -0.48 -6.42 10.25 -6.62 -0.07 -6.49 16 7 C 0.16 1.97 6.29 -82.59 -0.52 1.46 16 8 C 0.11 1.32 5.99 -4.97 -0.03 1.29 16 9 N -0.68 -10.28 6.49 -115.05 -0.75 -11.03 16 10 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 11 C -0.08 -1.60 2.55 -90.62 -0.23 -1.83 16 12 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.13 -2.60 8.77 37.16 0.33 -2.28 16 14 C 0.02 0.39 3.76 -27.88 -0.10 0.28 16 15 C -0.59 -16.91 8.41 -34.44 -0.29 -17.20 16 16 H 0.05 1.42 7.06 -52.49 -0.37 1.04 16 17 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 18 N -0.92 -28.40 13.65 55.43 0.76 -27.64 16 19 Si 1.07 25.69 29.90 -169.99 -5.08 20.61 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 C -0.15 -1.50 9.43 -39.44 -0.37 -1.88 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 26 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 27 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.34 5.37 6.98 -39.29 -0.27 5.09 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.36 6.95 -51.93 -0.36 1.00 16 35 H 0.03 0.56 6.68 -51.93 -0.35 0.22 16 36 H 0.01 0.16 8.00 -51.93 -0.42 -0.25 16 37 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 38 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 39 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -31.61 339.48 -9.55 -41.15 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.92 Total: 0.02 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.10 Total: -19.85 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.06 Total: -45.15 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.51 Total: -1.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.61 -9.55 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877498000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.831 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds