Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36047 * 116.99748 * 2 1 4 4 C 1.38715 * 120.51744 * 270.02386 * 3 2 1 5 5 F 1.35106 * 119.64288 * 359.97438 * 4 3 2 6 6 N 1.32099 * 120.71204 * 179.97438 * 4 3 2 7 7 C 1.32013 * 121.88831 * 359.97438 * 6 4 3 8 8 C 1.37933 * 120.96289 * 359.72660 * 7 6 4 9 9 C 1.39358 * 119.18460 * 0.54465 * 8 7 6 10 10 N 1.39758 * 120.85771 * 179.72909 * 9 8 7 11 11 C 1.34777 * 119.99995 * 33.90128 * 10 9 8 12 12 O 1.21278 * 119.99880 * 355.87235 * 11 10 9 13 13 C 1.50698 * 119.99881 * 175.87276 * 11 10 9 14 14 C 1.53003 * 109.46961 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47264 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47384 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99518 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00065 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00017 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99998 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47425 * 89.99635 * 20 18 16 22 22 H 1.48498 * 109.47280 * 210.00461 * 20 18 16 23 23 H 1.48507 * 109.47013 * 329.99992 * 20 18 16 24 24 H 1.08997 * 109.47375 * 299.99595 * 1 2 3 25 25 H 1.08999 * 109.46969 * 60.00223 * 1 2 3 26 26 H 1.09006 * 109.46743 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.51902 * 179.97438 * 7 6 4 28 28 H 1.08002 * 120.40576 * 180.30623 * 8 7 6 29 29 H 0.97001 * 120.00137 * 213.89431 * 10 9 8 30 30 H 1.08998 * 109.47358 * 299.99896 * 13 11 10 31 31 H 1.09000 * 109.47617 * 60.00040 * 13 11 10 32 32 H 1.08995 * 109.47189 * 299.99627 * 14 13 11 33 33 H 1.08996 * 109.47239 * 60.00032 * 14 13 11 34 34 H 1.08998 * 109.47306 * 299.99968 * 15 14 13 35 35 H 1.09013 * 109.47142 * 59.99724 * 15 14 13 36 36 H 0.96992 * 119.99976 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 2.3659 1.8401 -1.1950 5 9 2.0608 1.2411 -2.3669 6 7 2.9652 3.0173 -1.1995 7 6 3.2830 3.6424 -0.0810 8 6 2.9940 3.0879 1.1485 9 6 2.3675 1.8442 1.2028 10 7 2.0638 1.2476 2.4296 11 6 1.7174 2.0127 3.4836 12 8 1.7417 3.2215 3.3895 13 6 1.2999 1.3660 4.7792 14 6 0.9606 2.4501 5.8042 15 6 0.5362 1.7937 7.1194 16 6 0.2026 2.8615 8.1292 17 1 0.2847 3.9040 7.8596 18 6 -0.2074 2.5074 9.3971 19 7 -0.3069 1.2377 9.7254 20 14 -0.6216 3.8309 10.6485 21 1 -2.0628 4.1742 10.5474 22 1 -0.3266 3.3299 12.0149 23 1 0.1956 5.0410 10.3779 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.7727 4.6037 -0.1293 28 1 3.2537 3.6094 2.0580 29 1 2.1021 0.2828 2.5224 30 1 0.4231 0.7416 4.6077 31 1 2.1159 0.7504 5.1576 32 1 1.8371 3.0749 5.9759 33 1 0.1444 3.0654 5.4257 34 1 -0.3405 1.1692 6.9474 35 1 1.3522 1.1780 7.4982 36 1 -0.5950 0.9886 10.6174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890824780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = -88.464224 kcal Electronic energy + Delta-G solvation = -21304.149548 eV Core-core repulsion = 17703.352843 eV Total energy + Delta-G solvation = -3600.796706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.25906 -41.28631 -39.52216 -38.32571 -35.41965 -34.36555 -32.29488 -31.15091 -30.70866 -28.08499 -27.27599 -24.74501 -23.68597 -23.19939 -20.99472 -20.09385 -18.83768 -18.32429 -18.00314 -16.98742 -16.54656 -16.31260 -16.12331 -15.67211 -15.44399 -14.92208 -14.80996 -14.49633 -14.00240 -13.82883 -13.57572 -13.24498 -13.10224 -12.39427 -12.17925 -11.95530 -11.61962 -11.28806 -10.95329 -10.88357 -10.76805 -10.61008 -10.31089 -9.81270 -9.73196 -9.41555 -9.18746 -9.12091 -8.96019 -8.39226 -6.04778 -4.06764 0.42291 0.66523 2.43467 2.61416 2.90034 3.25975 3.30136 3.36456 3.40600 3.50482 4.18168 4.42310 4.49501 4.53341 4.91530 4.93501 4.97381 5.06955 5.26802 5.31533 5.42497 5.45850 5.47653 5.58375 5.91378 6.02818 6.16713 6.55040 6.75246 6.87531 7.01069 7.04306 7.30654 7.60725 7.72016 7.91196 7.95143 8.37659 9.00125 9.57797 11.06643 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.035358 B = 0.002975 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.706338 B = 9408.233158 C = 9947.016200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C -0.015 4.015 4 C 0.310 3.690 5 F -0.105 7.105 6 N -0.516 5.516 7 C 0.149 3.851 8 C -0.177 4.177 9 C 0.211 3.789 10 N -0.673 5.673 11 C 0.515 3.485 12 O -0.509 6.509 13 C -0.136 4.136 14 C -0.096 4.096 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.176 0.824 28 H 0.166 0.834 29 H 0.421 0.579 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -2.594 -20.077 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C -0.065 4.065 4 C 0.156 3.844 5 F -0.084 7.084 6 N -0.234 5.234 7 C -0.007 4.007 8 C -0.200 4.200 9 C 0.105 3.895 10 N -0.319 5.319 11 C 0.305 3.695 12 O -0.381 6.381 13 C -0.176 4.176 14 C -0.134 4.134 15 C -0.016 4.016 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.121 0.879 27 H 0.193 0.807 28 H 0.183 0.817 29 H 0.258 0.742 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.267 -1.695 -20.709 21.435 hybrid contribution -0.713 -0.270 1.260 1.473 sum 4.554 -1.965 -19.448 20.071 Atomic orbital electron populations 1.23159 0.78245 1.03959 1.01179 1.86133 1.20552 1.22722 1.94014 1.19016 1.05624 0.91211 0.90680 1.18256 0.96636 0.88981 0.80546 1.91629 1.90055 1.81209 1.45545 1.67116 1.14811 1.07826 1.33601 1.22495 0.94178 0.98663 0.85355 1.22452 1.00146 0.95930 1.01469 1.18280 0.93061 0.92900 0.85216 1.43809 1.68053 1.11929 1.08096 1.21735 0.74947 0.87650 0.85148 1.90689 1.50305 1.14357 1.82787 1.21925 1.03119 1.01544 0.91005 1.21498 1.01186 0.95687 0.95055 1.19129 0.96501 0.96033 0.89982 1.21239 1.44821 0.93170 0.96636 0.92544 1.25019 0.95614 0.95359 0.98469 1.69954 1.47754 1.15569 1.20347 0.86583 0.78752 0.82008 0.80623 1.20651 1.21221 1.19804 0.93096 0.93191 0.87923 0.80685 0.81667 0.74185 0.88660 0.88510 0.92411 0.92517 0.96539 0.96475 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.13 101.05 1.13 1.36 16 2 O -0.32 -3.41 9.96 -19.89 -0.20 -3.61 16 3 C -0.01 -0.17 5.78 -38.89 -0.22 -0.40 16 4 C 0.31 3.84 8.42 -17.26 -0.15 3.69 16 5 F -0.11 -1.32 17.14 2.25 0.04 -1.28 16 6 N -0.52 -6.26 10.37 -13.56 -0.14 -6.40 16 7 C 0.15 1.50 11.17 -17.59 -0.20 1.30 16 8 C -0.18 -2.00 8.78 -39.28 -0.34 -2.34 16 9 C 0.21 2.45 6.37 -83.31 -0.53 1.92 16 10 N -0.67 -7.30 5.22 -9.61 -0.05 -7.35 16 11 C 0.52 7.04 7.69 -10.99 -0.08 6.95 16 12 O -0.51 -8.51 13.43 5.56 0.07 -8.43 16 13 C -0.14 -1.93 5.70 -27.88 -0.16 -2.09 16 14 C -0.10 -1.88 4.44 -26.73 -0.12 -2.00 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.17 1.96 6.26 -52.49 -0.33 1.63 16 29 H 0.42 3.54 8.63 -40.82 -0.35 3.19 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -32.41 321.47 -5.39 -37.80 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.45 Total: -1.85 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.23 Total: -4.53 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.55 Total: -39.35 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.12 Total: -12.04 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.41 -5.39 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890824780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.664 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds