Wall clock time and date at job start Tue Mar 31 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00088 * 2 1 4 4 C 1.50698 * 115.55026 * 34.32823 * 3 2 1 5 5 N 1.29948 * 126.28762 * 150.60385 * 4 3 2 6 6 O 1.21305 * 110.24749 * 179.97438 * 5 4 3 7 7 C 1.33638 * 109.81324 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.54924 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47329 * 269.98024 * 8 7 6 10 10 C 1.53000 * 109.47111 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47477 * 180.02562 * 10 9 8 12 12 C 1.50690 * 109.47457 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00007 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00260 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99701 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00416 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46824 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47135 * 120.00087 * 16 14 12 19 19 H 1.48502 * 109.47081 * 240.00279 * 16 14 12 20 20 N 1.31133 * 106.89909 * 359.76883 * 7 6 5 21 21 C 1.53001 * 117.50165 * 248.61916 * 3 2 1 22 22 C 1.52994 * 59.99995 * 252.51141 * 21 3 2 23 23 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00061 * 1 2 3 25 25 H 1.09001 * 109.46593 * 60.00058 * 1 2 3 26 26 H 1.09003 * 109.46655 * 29.98153 * 8 7 6 27 27 H 1.08996 * 109.46974 * 149.97752 * 8 7 6 28 28 H 1.09003 * 109.47357 * 299.99699 * 9 8 7 29 29 H 1.08996 * 109.47315 * 59.99936 * 9 8 7 30 30 H 1.09005 * 109.47312 * 299.99653 * 10 9 8 31 31 H 1.08996 * 109.47193 * 59.99727 * 10 9 8 32 32 H 1.09005 * 109.46520 * 300.00081 * 11 10 9 33 33 H 1.09003 * 109.46991 * 59.99289 * 11 10 9 34 34 H 0.97010 * 119.99665 * 180.02562 * 15 14 12 35 35 H 1.09001 * 117.49563 * 0.02562 * 21 3 2 36 36 H 1.08992 * 117.49949 * 145.01701 * 21 3 2 37 37 H 1.09006 * 117.49583 * 252.50356 * 22 21 3 38 38 H 1.09003 * 117.50046 * 107.49562 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.2743 2.6534 0.7667 5 7 1.5750 3.7694 1.3606 6 8 0.5907 4.2425 1.8885 7 6 -0.4632 3.4490 1.6755 8 6 -1.8711 3.6767 2.1624 9 6 -2.0465 3.0284 3.5370 10 6 -3.4761 3.2591 4.0311 11 6 -3.6514 2.6114 5.4061 12 6 -5.0592 2.8392 5.8929 13 1 -5.7591 3.3904 5.2825 14 6 -5.4541 2.3429 7.1171 15 7 -4.6022 1.6704 7.8598 16 14 -7.1995 2.6246 7.7203 17 1 -7.9540 3.4036 6.7059 18 1 -7.8660 1.3153 7.9361 19 1 -7.1656 3.3796 8.9987 20 7 -0.0392 2.4365 0.9580 21 6 2.8631 2.3446 -1.2637 22 6 3.7033 2.1505 0.0000 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -2.0603 4.7475 2.2388 27 1 -2.5752 3.2327 1.4587 28 1 -1.8573 1.9577 3.4607 29 1 -1.3425 3.4725 4.2407 30 1 -3.6658 4.3298 4.1075 31 1 -4.1799 2.8148 3.3273 32 1 -3.4615 1.5407 5.3301 33 1 -2.9476 3.0561 6.1096 34 1 -4.8802 1.3209 8.7210 35 1 3.0392 1.6622 -2.0953 36 1 2.5992 3.3651 -1.5409 37 1 3.9923 3.0436 0.5543 38 1 4.4327 1.3405 0.0000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896780778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:08 Heat of formation + Delta-G solvation = 80.940491 kcal Electronic energy + Delta-G solvation = -19210.281638 eV Core-core repulsion = 16183.044047 eV Total energy + Delta-G solvation = -3027.237590 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.73529 -38.06172 -36.26174 -35.19775 -33.28826 -31.90183 -29.47782 -28.87085 -25.84951 -25.59922 -23.63349 -22.91419 -22.28508 -20.57471 -20.22557 -18.20153 -18.07989 -16.45933 -16.24344 -15.82319 -15.26040 -14.96626 -14.52344 -14.25811 -13.84552 -13.58957 -13.08071 -12.89922 -12.73502 -12.36859 -12.17165 -12.10379 -11.94362 -11.73342 -11.38780 -11.13406 -11.07598 -10.89358 -10.71893 -10.63268 -10.54333 -10.36021 -9.86237 -9.76241 -9.34779 -9.06951 -8.37455 -7.83611 -6.02092 -4.04812 0.97720 1.36672 1.97041 2.24214 2.71286 3.14528 3.29591 3.30613 3.37301 3.40833 3.86460 4.25689 4.39654 4.44180 4.77239 4.98700 5.11120 5.13766 5.17449 5.21724 5.30859 5.33987 5.38239 5.44452 5.64436 5.66198 5.72174 5.91821 5.99641 6.13335 6.28348 6.61929 6.77295 7.05592 7.64870 7.77898 7.97646 8.00085 8.39382 9.02792 9.59674 11.09221 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030499 B = 0.002901 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.856068 B = 9648.668817 C =10093.309495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.179 6.179 3 C -0.037 4.037 4 C 0.202 3.798 5 N -0.380 5.380 6 O 0.079 5.921 7 C 0.205 3.795 8 C -0.032 4.032 9 C -0.116 4.116 10 C -0.108 4.108 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.486 5.486 21 C -0.136 4.136 22 C -0.124 4.124 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.579 1.613 -18.523 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.051 5.949 3 C -0.149 4.149 4 C -0.071 4.071 5 N -0.088 5.088 6 O 0.021 5.979 7 C -0.014 4.014 8 C -0.071 4.071 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.219 5.219 21 C -0.177 4.177 22 C -0.164 4.164 23 H 0.112 0.888 24 H 0.131 0.869 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.005 0.560 -18.564 23.876 hybrid contribution -1.954 1.127 0.616 2.338 sum 13.052 1.686 -17.948 22.256 Atomic orbital electron populations 1.23818 0.92030 1.05553 1.07837 1.86287 1.09898 1.01626 1.97107 1.21042 0.95811 0.93874 1.04183 1.24463 0.90067 0.92977 0.99641 1.74559 1.08299 1.12637 1.13322 1.85307 1.13583 1.43673 1.55332 1.29291 0.95005 0.84986 0.92159 1.20593 0.82316 1.04422 0.99783 1.21745 1.00746 1.00759 0.92174 1.21634 0.91975 1.00815 1.00150 1.19104 0.96840 0.95860 0.89942 1.21284 0.97162 1.34643 1.02846 0.92587 1.25037 0.97370 0.95229 0.96898 1.69980 1.34663 1.36802 1.11991 0.86549 0.84872 0.77916 0.78741 1.19722 1.21022 1.21023 1.71961 1.08007 1.23239 1.18740 1.23484 1.00549 1.02582 0.91129 1.23145 0.89179 1.03845 1.00220 0.88791 0.86931 0.90503 0.87893 0.87168 0.91486 0.91586 0.92875 0.92900 0.96567 0.96561 0.93039 0.86393 0.88032 0.86899 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.39 101.05 0.95 -0.46 16 2 S -0.18 -2.10 22.46 -107.50 -2.41 -4.51 16 3 C -0.04 -0.43 2.74 -91.77 -0.25 -0.68 16 4 C 0.20 2.75 7.38 -156.37 -1.15 1.60 16 5 N -0.38 -5.36 11.74 30.90 0.36 -5.00 16 6 O 0.08 1.08 11.31 18.11 0.20 1.29 16 7 C 0.20 2.64 7.77 -13.05 -0.10 2.54 16 8 C -0.03 -0.36 5.84 -27.88 -0.16 -0.53 16 9 C -0.12 -1.72 5.20 -26.73 -0.14 -1.86 16 10 C -0.11 -1.99 5.15 -26.73 -0.14 -2.12 16 11 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 12 C -0.52 -14.40 9.11 -34.45 -0.31 -14.71 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 16 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 N -0.49 -6.64 7.64 -9.87 -0.08 -6.72 16 21 C -0.14 -1.17 10.00 -26.73 -0.27 -1.44 16 22 C -0.12 -1.13 9.91 -26.74 -0.26 -1.39 16 23 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 24 H 0.11 1.47 5.60 -51.92 -0.29 1.18 16 25 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.11 1.05 7.90 -51.93 -0.41 0.64 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -30.85 335.60 -8.97 -39.82 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.74 Total: -3.07 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.08 Total: -17.21 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 1.02 Total: -37.70 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.20 Total: 1.29 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.41 Total: -4.51 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.85 -8.97 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896780778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.760 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds