Wall clock time and date at job start Tue Mar 31 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.52993 * 109.47391 * 176.33176 * 3 2 1 5 5 H 1.08997 * 109.47262 * 54.43382 * 4 3 2 6 6 N 1.46901 * 109.47635 * 174.43668 * 4 3 2 7 7 C 1.46900 * 110.99882 * 273.88293 * 6 4 3 8 8 C 1.53003 * 109.47243 * 185.17891 * 7 6 4 9 9 C 1.50696 * 109.47225 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00240 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00213 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00169 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99661 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47190 * 89.99978 * 13 11 9 15 15 H 1.48499 * 109.47286 * 209.99644 * 13 11 9 16 16 H 1.48496 * 109.47459 * 330.00032 * 13 11 9 17 17 C 1.50699 * 109.46890 * 294.43512 * 4 3 2 18 18 N 1.31875 * 119.62888 * 284.99465 * 17 4 3 19 19 C 1.31852 * 121.73905 * 179.97438 * 18 17 4 20 20 C 1.38233 * 120.79459 * 0.02836 * 19 18 17 21 21 C 1.38610 * 119.17325 * 359.97438 * 20 19 18 22 22 C 1.38309 * 119.62710 * 104.72504 * 17 4 3 23 23 Cl 1.73605 * 120.42997 * 0.02562 * 22 17 4 24 24 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47417 * 299.99567 * 1 2 3 26 26 H 1.09005 * 109.47520 * 60.00406 * 1 2 3 27 27 H 1.09000 * 109.47075 * 240.00009 * 2 1 3 28 28 H 1.08996 * 109.47434 * 119.99762 * 2 1 3 29 29 H 1.09005 * 109.47373 * 56.32777 * 3 2 1 30 30 H 1.09008 * 109.47385 * 296.33160 * 3 2 1 31 31 H 1.00900 * 111.00107 * 37.83630 * 6 4 3 32 32 H 1.08992 * 109.47289 * 305.18532 * 7 6 4 33 33 H 1.09002 * 109.47041 * 65.18512 * 7 6 4 34 34 H 1.09002 * 109.47467 * 300.00507 * 8 7 6 35 35 H 1.09002 * 109.46595 * 60.00348 * 8 7 6 36 36 H 0.97004 * 119.99683 * 179.97438 * 12 11 9 37 37 H 1.08004 * 119.60540 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.41162 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.79309 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5671 1.4436 0.0923 5 1 3.9798 0.8284 -0.7073 6 7 4.0649 2.8192 -0.0416 7 6 4.2381 3.1811 -1.4547 8 6 4.8772 4.5679 -1.5513 9 6 5.0555 4.9390 -3.0010 10 1 4.7438 4.2544 -3.7759 11 6 5.6166 6.1525 -3.3380 12 7 5.7717 6.4765 -4.6031 13 14 6.1564 7.3363 -1.9977 14 1 7.5709 7.0637 -1.6367 15 1 6.0313 8.7318 -2.4898 16 1 5.2964 7.1546 -0.8008 17 6 3.9900 0.8839 1.4260 18 7 3.8614 1.6203 2.5125 19 6 4.2176 1.1722 3.7003 20 6 4.7439 -0.0973 3.8491 21 6 4.8947 -0.9017 2.7304 22 6 4.5036 -0.3983 1.4977 23 17 4.6634 -1.3629 0.0631 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6238 1.9750 0.8553 30 1 1.7313 1.9371 -0.9211 31 1 3.4542 3.4719 0.4266 32 1 4.8830 2.4492 -1.9408 33 1 3.2663 3.1938 -1.9483 34 1 4.2323 5.2999 -1.0651 35 1 5.8490 4.5553 -1.0577 36 1 6.1662 7.3304 -4.8402 37 1 4.0968 1.8046 4.5674 38 1 5.0340 -0.4579 4.8249 39 1 5.3027 -1.8979 2.8166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926132220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:39 Heat of formation + Delta-G solvation = 9.073038 kcal Electronic energy + Delta-G solvation = -19789.553300 eV Core-core repulsion = 16757.155597 eV Total energy + Delta-G solvation = -3032.397703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55262 -37.28323 -36.72600 -34.38223 -32.92895 -32.41005 -31.54997 -29.77734 -27.56913 -24.81547 -24.01517 -23.28637 -21.73521 -20.66497 -20.33074 -17.33809 -16.82937 -16.49628 -16.15771 -15.41420 -15.04513 -14.44213 -14.32827 -13.92001 -13.73648 -13.46581 -13.29767 -12.84191 -12.55735 -12.46445 -12.24381 -12.09212 -11.74655 -11.63704 -11.33294 -11.13545 -10.96447 -10.83503 -10.51236 -10.18717 -9.98399 -9.76527 -9.74210 -9.49540 -9.17964 -8.93071 -8.49207 -7.86532 -6.00376 -3.98291 0.79676 1.01402 1.91840 3.36888 3.43395 3.49587 3.53529 4.14734 4.31893 4.50706 4.56816 4.75964 4.81320 4.93232 4.95602 5.13843 5.17325 5.28309 5.34691 5.44900 5.58221 5.69277 5.73356 5.79602 5.81287 5.92519 6.05736 6.15012 6.24255 6.26528 6.32623 6.44087 6.82929 7.16767 7.44894 7.61114 7.79845 7.86400 7.97516 8.57436 9.03897 9.62496 11.12968 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.004371 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.833121 B = 6404.122264 C = 6867.779042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.143 4.143 4 C 0.126 3.874 5 H 0.099 0.901 6 N -0.678 5.678 7 C 0.074 3.926 8 C -0.008 4.008 9 C -0.520 4.520 10 H 0.071 0.929 11 C 0.067 3.933 12 N -0.905 5.905 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.264 1.264 17 C 0.176 3.824 18 N -0.451 5.451 19 C 0.104 3.896 20 C -0.174 4.174 21 C -0.068 4.068 22 C -0.089 4.089 23 Cl -0.053 7.053 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.344 0.656 32 H 0.063 0.937 33 H 0.024 0.976 34 H 0.014 0.986 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 -17.257 17.034 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.182 4.182 4 C 0.015 3.985 5 H 0.117 0.883 6 N -0.308 5.308 7 C -0.054 4.054 8 C -0.046 4.046 9 C -0.558 4.558 10 H 0.089 0.911 11 C -0.134 4.134 12 N -0.544 5.544 13 Si 0.709 3.291 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.189 1.189 17 C 0.036 3.964 18 N -0.159 5.159 19 C -0.053 4.053 20 C -0.194 4.194 21 C -0.094 4.094 22 C -0.119 4.119 23 Cl -0.024 7.024 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.177 0.823 38 H 0.158 0.842 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.028 -16.508 16.783 24.300 hybrid contribution -0.084 -0.183 0.376 0.427 sum -6.113 -16.690 17.159 24.706 Atomic orbital electron populations 1.21758 0.95897 1.01301 1.01812 1.21514 0.95830 0.96660 1.01922 1.22326 0.95232 0.97547 1.03093 1.20637 0.93325 0.93097 0.91463 0.88274 1.60508 1.53318 1.00868 1.16113 1.22022 0.98745 0.99518 0.85146 1.19517 0.96046 0.91500 0.97508 1.21077 1.40728 1.03137 0.90877 0.91116 1.24992 0.95209 0.97911 0.95260 1.69919 1.45187 1.22924 1.16371 0.86747 0.79552 0.80066 0.82744 1.20306 1.21553 1.18896 1.21247 0.92007 0.87819 0.95328 1.67642 1.15691 1.34598 0.98000 1.22929 0.93435 0.93581 0.95365 1.22107 1.02231 0.95750 0.99343 1.21472 0.96721 1.00579 0.90646 1.21895 1.05928 0.94609 0.89430 1.98374 1.96405 1.70163 1.37482 0.92987 0.92966 0.92587 0.91712 0.92565 0.91157 0.90719 0.83699 0.91812 0.95737 0.96754 0.96169 0.92782 0.82264 0.84204 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.36 5.62 -26.73 -0.15 -1.51 16 3 C -0.14 -1.85 4.65 -26.74 -0.12 -1.97 16 4 C 0.13 1.87 2.18 -68.87 -0.15 1.72 16 5 H 0.10 1.51 5.92 -51.93 -0.31 1.20 16 6 N -0.68 -12.01 6.04 -107.96 -0.65 -12.66 16 7 C 0.07 1.51 5.45 -3.82 -0.02 1.49 16 8 C -0.01 -0.19 4.34 -27.88 -0.12 -0.32 16 9 C -0.52 -15.08 9.66 -34.44 -0.33 -15.42 16 10 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 13 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 17 C 0.18 2.44 4.89 -82.55 -0.40 2.03 16 18 N -0.45 -6.18 10.06 -9.44 -0.10 -6.28 16 19 C 0.10 1.09 11.18 -17.54 -0.20 0.89 16 20 C -0.17 -1.51 10.11 -39.45 -0.40 -1.91 16 21 C -0.07 -0.66 9.98 -39.24 -0.39 -1.05 16 22 C -0.09 -1.08 5.69 -39.36 -0.22 -1.31 16 23 Cl -0.05 -0.62 26.93 -51.86 -1.40 -2.01 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.01 7.51 -51.92 -0.39 0.62 16 31 H 0.34 5.96 8.52 -39.29 -0.33 5.62 16 32 H 0.06 1.33 7.92 -51.93 -0.41 0.92 16 33 H 0.02 0.49 7.54 -51.93 -0.39 0.10 16 34 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -31.94 334.51 -9.16 -41.10 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.92 Total: 1.22 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.24 Total: -16.55 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.03 Total: -46.48 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.40 Total: -2.01 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.94 -9.16 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.175 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds