Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47326 * 2 1 4 4 C 1.52994 * 109.47136 * 174.80749 * 3 2 1 5 5 H 1.08993 * 109.47627 * 305.59682 * 4 3 2 6 6 N 1.46899 * 109.46896 * 185.59707 * 4 3 2 7 7 C 1.46899 * 111.00024 * 85.94360 * 6 4 3 8 8 C 1.53003 * 109.47510 * 175.50355 * 7 6 4 9 9 C 1.50698 * 109.47213 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99862 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99812 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00433 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47340 * 89.99533 * 13 11 9 15 15 H 1.48495 * 109.47135 * 209.99934 * 13 11 9 16 16 H 1.48500 * 109.47062 * 329.99609 * 13 11 9 17 17 C 1.50706 * 109.47228 * 65.59968 * 4 3 2 18 18 N 1.31881 * 119.62388 * 74.72238 * 17 4 3 19 19 C 1.31854 * 121.73608 * 179.75301 * 18 17 4 20 20 C 1.38236 * 120.79016 * 0.52544 * 19 18 17 21 21 C 1.38606 * 119.17680 * 359.74728 * 20 19 18 22 22 C 1.38296 * 119.62593 * 254.99952 * 17 4 3 23 23 Cl 1.73598 * 120.43428 * 359.97438 * 22 17 4 24 24 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47313 * 59.99432 * 1 2 3 26 26 H 1.09001 * 109.46829 * 299.99433 * 1 2 3 27 27 H 1.08999 * 109.47942 * 120.00226 * 2 1 3 28 28 H 1.09001 * 109.46829 * 240.00567 * 2 1 3 29 29 H 1.09003 * 109.46888 * 294.80909 * 3 2 1 30 30 H 1.09004 * 109.46543 * 54.80219 * 3 2 1 31 31 H 1.00897 * 111.00313 * 209.89530 * 6 4 3 32 32 H 1.08998 * 109.47053 * 295.50099 * 7 6 4 33 33 H 1.08998 * 109.47312 * 55.49888 * 7 6 4 34 34 H 1.08998 * 109.46754 * 299.99927 * 8 7 6 35 35 H 1.09007 * 109.47012 * 59.99542 * 8 7 6 36 36 H 0.96999 * 120.00709 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.60572 * 180.27191 * 19 18 17 38 38 H 1.08000 * 120.40998 * 179.71865 * 20 19 18 39 39 H 1.07996 * 120.79593 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5644 1.4445 0.1305 5 1 3.8544 0.8723 1.0117 6 7 4.0425 2.8269 0.2653 7 6 4.0062 3.2622 1.6678 8 6 4.6141 4.6615 1.7836 9 6 4.5773 5.1077 3.2225 10 1 4.1615 4.4584 3.9787 11 6 5.0736 6.3453 3.5733 12 7 5.5794 7.1362 2.6524 13 14 5.0287 6.8982 5.3571 14 1 6.2806 6.4792 6.0369 15 1 4.9056 8.3770 5.4140 16 1 3.8641 6.2780 6.0384 17 6 4.1746 0.8194 -1.0975 18 7 4.2028 1.4972 -2.2285 19 6 4.7306 0.9927 -3.3264 20 6 5.2683 -0.2809 -3.3326 21 6 5.2524 -1.0267 -2.1644 22 6 4.6933 -0.4607 -1.0272 23 17 4.6459 -1.3480 0.4642 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.7546 1.9288 -0.9329 30 1 1.6026 1.9825 0.8398 31 1 4.9692 2.9284 -0.1208 32 1 2.9730 3.2852 2.0144 33 1 4.5791 2.5654 2.2795 34 1 5.6472 4.6385 1.4369 35 1 4.0410 5.3584 1.1718 36 1 5.9289 8.0068 2.8992 37 1 4.7394 1.5798 -4.2328 38 1 5.6950 -0.6897 -4.2365 39 1 5.6656 -2.0242 -2.1396 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926132224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = 7.781559 kcal Electronic energy + Delta-G solvation = -19732.320726 eV Core-core repulsion = 16699.867020 eV Total energy + Delta-G solvation = -3032.453706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59242 -37.07198 -36.73765 -34.32257 -32.97224 -32.43157 -31.48413 -29.35915 -27.42636 -24.77913 -23.95996 -23.33161 -21.80001 -20.59118 -20.19197 -17.32591 -16.74622 -16.26378 -16.08228 -15.25909 -14.88228 -14.61879 -14.36500 -13.83953 -13.68142 -13.52663 -13.27061 -12.72867 -12.47709 -12.35608 -12.17586 -11.95646 -11.67216 -11.29577 -11.16597 -10.91552 -10.85620 -10.81189 -10.49217 -10.43991 -9.98227 -9.88108 -9.56767 -9.32688 -9.11704 -8.94102 -8.31304 -7.73590 -5.95582 -3.98020 0.74190 0.97096 1.87437 3.34835 3.40910 3.44414 3.50844 4.10316 4.28767 4.49953 4.54655 4.73068 4.79847 5.07583 5.12088 5.19324 5.28244 5.34186 5.40357 5.52077 5.70395 5.77083 5.77641 5.89928 5.94935 6.00025 6.20155 6.29100 6.38083 6.42722 6.45654 6.60348 7.03532 7.50373 7.76354 7.81057 7.90116 8.00792 8.13398 8.47967 9.09219 9.65489 11.15866 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.004054 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.940844 B = 6905.946186 C = 7314.633545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.101 4.101 4 C 0.130 3.870 5 H 0.064 0.936 6 N -0.671 5.671 7 C 0.065 3.935 8 C 0.025 3.975 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.151 3.849 18 N -0.441 5.441 19 C 0.104 3.896 20 C -0.170 4.170 21 C -0.069 4.069 22 C -0.089 4.089 23 Cl -0.052 7.052 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.339 0.661 32 H 0.060 0.940 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.163 0.837 38 H 0.142 0.858 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -19.369 -11.670 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.139 4.139 4 C 0.019 3.981 5 H 0.082 0.918 6 N -0.302 5.302 7 C -0.063 4.063 8 C -0.012 4.012 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.199 1.199 17 C 0.012 3.988 18 N -0.149 5.149 19 C -0.054 4.054 20 C -0.190 4.190 21 C -0.096 4.096 22 C -0.118 4.118 23 Cl -0.023 7.023 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.180 0.820 38 H 0.159 0.841 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.196 -18.137 -11.723 21.999 hybrid contribution 1.285 -1.119 1.353 2.176 sum -2.911 -19.256 -10.369 22.063 Atomic orbital electron populations 1.21735 0.95828 1.01101 1.01960 1.21572 0.95904 0.97291 1.01505 1.21573 0.92858 0.95837 1.03643 1.20671 0.95652 0.90594 0.91193 0.91838 1.60579 1.31056 1.17981 1.20591 1.22264 1.00276 0.98908 0.84861 1.19073 0.95675 0.89672 0.96794 1.21169 1.39949 1.01313 0.93451 0.92746 1.24994 0.95398 0.96678 0.97250 1.69974 1.40805 1.09760 1.32715 0.86599 0.78355 0.77776 0.85300 1.20754 1.21212 1.19865 1.21454 0.93467 0.88915 0.95001 1.67763 1.14212 1.34959 0.97959 1.23023 0.92626 0.92997 0.96737 1.22164 1.02094 0.96071 0.98688 1.21491 0.96427 1.00534 0.91101 1.21966 1.05212 0.95110 0.89518 1.98376 1.97167 1.74470 1.32318 0.93172 0.92847 0.92530 0.91993 0.92968 0.90848 0.90742 0.84299 0.92106 0.96656 0.96931 0.95491 0.93029 0.81991 0.84057 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.51 5.50 -26.73 -0.15 -1.65 16 3 C -0.10 -1.47 4.92 -26.73 -0.13 -1.60 16 4 C 0.13 2.04 2.21 -68.87 -0.15 1.89 16 5 H 0.06 1.01 5.93 -51.93 -0.31 0.70 16 6 N -0.67 -12.76 6.18 -107.96 -0.67 -13.43 16 7 C 0.06 1.41 5.47 -3.82 -0.02 1.39 16 8 C 0.03 0.67 5.19 -27.88 -0.14 0.53 16 9 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 10 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 13 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.15 2.14 4.56 -82.55 -0.38 1.77 16 18 N -0.44 -6.27 10.01 -9.44 -0.09 -6.36 16 19 C 0.10 1.10 11.18 -17.54 -0.20 0.90 16 20 C -0.17 -1.46 10.11 -39.45 -0.40 -1.86 16 21 C -0.07 -0.66 9.98 -39.24 -0.39 -1.05 16 22 C -0.09 -1.08 6.00 -39.36 -0.24 -1.31 16 23 Cl -0.05 -0.61 26.79 -51.86 -1.39 -2.00 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 28 H 0.05 0.63 7.33 -51.93 -0.38 0.25 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.15 7.48 -51.93 -0.39 0.76 16 31 H 0.34 6.59 8.22 -39.29 -0.32 6.27 16 32 H 0.06 1.31 7.52 -51.93 -0.39 0.92 16 33 H 0.02 0.33 7.94 -51.93 -0.41 -0.08 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -31.41 338.17 -9.54 -40.95 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.96 Total: 1.34 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.24 Total: -15.94 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.03 Total: -46.38 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.39 Total: -2.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.41 -9.54 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.729 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds