Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47326 * 2 1 4 4 C 1.52994 * 109.47136 * 174.80749 * 3 2 1 5 5 H 1.08993 * 109.47627 * 305.59682 * 4 3 2 6 6 N 1.46899 * 109.46896 * 185.59707 * 4 3 2 7 7 C 1.46899 * 111.00024 * 85.94360 * 6 4 3 8 8 C 1.53003 * 109.47510 * 175.50355 * 7 6 4 9 9 C 1.50698 * 109.47213 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99862 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99812 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00433 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47340 * 89.99533 * 13 11 9 15 15 H 1.48495 * 109.47135 * 209.99934 * 13 11 9 16 16 H 1.48500 * 109.47062 * 329.99609 * 13 11 9 17 17 C 1.50706 * 109.47228 * 65.59968 * 4 3 2 18 18 N 1.31881 * 119.62388 * 74.72238 * 17 4 3 19 19 C 1.31854 * 121.73608 * 179.75301 * 18 17 4 20 20 C 1.38236 * 120.79016 * 0.52544 * 19 18 17 21 21 C 1.38606 * 119.17680 * 359.74728 * 20 19 18 22 22 C 1.38296 * 119.62593 * 254.99952 * 17 4 3 23 23 Cl 1.73598 * 120.43428 * 359.97438 * 22 17 4 24 24 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47313 * 59.99432 * 1 2 3 26 26 H 1.09001 * 109.46829 * 299.99433 * 1 2 3 27 27 H 1.08999 * 109.47942 * 120.00226 * 2 1 3 28 28 H 1.09001 * 109.46829 * 240.00567 * 2 1 3 29 29 H 1.09003 * 109.46888 * 294.80909 * 3 2 1 30 30 H 1.09004 * 109.46543 * 54.80219 * 3 2 1 31 31 H 1.00897 * 111.00313 * 209.89530 * 6 4 3 32 32 H 1.08998 * 109.47053 * 295.50099 * 7 6 4 33 33 H 1.08998 * 109.47312 * 55.49888 * 7 6 4 34 34 H 1.08998 * 109.46754 * 299.99927 * 8 7 6 35 35 H 1.09007 * 109.47012 * 59.99542 * 8 7 6 36 36 H 0.96999 * 120.00709 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.60572 * 180.27191 * 19 18 17 38 38 H 1.08000 * 120.40998 * 179.71865 * 20 19 18 39 39 H 1.07996 * 120.79593 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5644 1.4445 0.1305 5 1 3.8544 0.8723 1.0117 6 7 4.0425 2.8269 0.2653 7 6 4.0062 3.2622 1.6678 8 6 4.6141 4.6615 1.7836 9 6 4.5773 5.1077 3.2225 10 1 4.1615 4.4584 3.9787 11 6 5.0736 6.3453 3.5733 12 7 5.5794 7.1362 2.6524 13 14 5.0287 6.8982 5.3571 14 1 6.2806 6.4792 6.0369 15 1 4.9056 8.3770 5.4140 16 1 3.8641 6.2780 6.0384 17 6 4.1746 0.8194 -1.0975 18 7 4.2028 1.4972 -2.2285 19 6 4.7306 0.9927 -3.3264 20 6 5.2683 -0.2809 -3.3326 21 6 5.2524 -1.0267 -2.1644 22 6 4.6933 -0.4607 -1.0272 23 17 4.6459 -1.3480 0.4642 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.7546 1.9288 -0.9329 30 1 1.6026 1.9825 0.8398 31 1 4.9692 2.9284 -0.1208 32 1 2.9730 3.2852 2.0144 33 1 4.5791 2.5654 2.2795 34 1 5.6472 4.6385 1.4369 35 1 4.0410 5.3584 1.1718 36 1 5.9289 8.0068 2.8992 37 1 4.7394 1.5798 -4.2328 38 1 5.6950 -0.6897 -4.2365 39 1 5.6656 -2.0242 -2.1396 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926132224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = -11.718921 kcal Electronic energy + Delta-G solvation = -19733.166330 eV Core-core repulsion = 16699.867020 eV Total energy + Delta-G solvation = -3033.299310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.50407 -38.33769 -37.66623 -35.91819 -34.64147 -33.47025 -32.66489 -30.90232 -28.81499 -26.34235 -25.12604 -24.44393 -22.84979 -22.45824 -21.35593 -18.52903 -18.23236 -17.59512 -17.15765 -16.48220 -16.37053 -15.98847 -15.76822 -15.11660 -14.98672 -14.51036 -14.28918 -14.19818 -13.89716 -13.56830 -13.28382 -13.18010 -12.97492 -12.92953 -12.70747 -12.45565 -12.23325 -12.09186 -11.89808 -11.83066 -11.41578 -11.39338 -11.28784 -10.77236 -10.56542 -10.40550 -9.86387 -9.28789 -8.19895 -6.31789 -0.11133 0.16978 0.99126 1.40268 1.42252 1.53517 2.40634 2.64878 3.12526 3.13671 3.14827 3.73713 3.83497 3.98667 4.07732 4.09927 4.25565 4.33258 4.39607 4.51214 4.54175 4.58441 4.74450 4.86368 4.91009 4.93238 5.02001 5.03302 5.07130 5.25637 5.33364 5.43265 5.45131 5.56582 5.65751 5.77783 6.11730 6.24822 6.45440 6.84808 6.95479 7.37464 8.92459 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.004054 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.940844 B = 6905.946186 C = 7314.633545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.095 4.095 4 C 0.130 3.870 5 H 0.062 0.938 6 N -0.676 5.676 7 C 0.085 3.915 8 C 0.034 3.966 9 C -0.544 4.544 10 H 0.061 0.939 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.262 1.262 17 C 0.127 3.873 18 N -0.479 5.479 19 C 0.092 3.908 20 C -0.149 4.149 21 C -0.068 4.068 22 C -0.097 4.097 23 Cl -0.055 7.055 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.334 0.666 32 H 0.061 0.939 33 H 0.017 0.983 34 H -0.012 1.012 35 H -0.005 1.005 36 H 0.264 0.736 37 H 0.187 0.813 38 H 0.184 0.816 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -21.309 -11.959 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.134 4.134 4 C 0.020 3.980 5 H 0.079 0.921 6 N -0.307 5.307 7 C -0.043 4.043 8 C -0.004 4.004 9 C -0.582 4.582 10 H 0.079 0.921 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.011 4.011 18 N -0.188 5.188 19 C -0.065 4.065 20 C -0.168 4.168 21 C -0.094 4.094 22 C -0.126 4.126 23 Cl -0.026 7.026 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.006 0.994 35 H 0.013 0.987 36 H 0.073 0.927 37 H 0.203 0.797 38 H 0.201 0.799 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.111 -20.101 -12.015 23.776 hybrid contribution 1.295 -0.544 1.295 1.911 sum -2.816 -20.645 -10.720 23.432 Atomic orbital electron populations 1.21727 0.94578 1.02227 1.01903 1.21471 0.96889 0.95248 1.01606 1.21508 0.92280 0.97423 1.02164 1.20652 0.96279 0.88425 0.92606 0.92054 1.60495 1.30768 1.20961 1.18468 1.21869 0.99620 0.96073 0.86780 1.18903 0.93956 0.91930 0.95572 1.21586 1.40227 1.01974 0.94422 0.92066 1.25982 0.94639 0.96663 1.02383 1.70115 1.41519 1.10262 1.35315 0.85407 0.78970 0.77356 0.79067 1.19701 1.20646 1.18641 1.21083 0.95547 0.90021 0.94493 1.67651 1.15792 1.36357 0.98970 1.23539 0.92217 0.94361 0.96415 1.22599 0.99790 0.94721 0.99726 1.21911 0.95381 1.01764 0.90316 1.22043 1.05608 0.94597 0.90368 1.98370 1.97220 1.74258 1.32730 0.91422 0.92854 0.92690 0.91828 0.92794 0.92210 0.92197 0.84866 0.92053 0.96455 0.99395 0.98698 0.92732 0.79658 0.79866 0.81055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.11 -2.70 5.50 30.60 0.17 -2.53 16 3 C -0.10 -2.85 4.92 30.59 0.15 -2.70 16 4 C 0.13 4.21 2.21 44.17 0.10 4.30 16 5 H 0.06 1.99 5.93 -2.39 -0.01 1.98 16 6 N -0.68 -26.86 6.18 -495.46 -3.06 -29.93 16 7 C 0.09 3.84 5.47 86.30 0.47 4.31 16 8 C 0.03 1.89 5.19 29.85 0.15 2.05 16 9 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 10 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 11 C 0.00 0.07 5.46 84.65 0.46 0.54 16 12 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 13 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 17 C 0.13 3.59 4.56 42.57 0.19 3.78 16 18 N -0.48 -13.51 10.01 -183.79 -1.84 -15.35 16 19 C 0.09 1.77 11.18 84.69 0.95 2.72 16 20 C -0.15 -2.03 10.11 22.36 0.23 -1.80 16 21 C -0.07 -1.10 9.98 22.49 0.22 -0.87 16 22 C -0.10 -2.23 6.00 22.42 0.13 -2.09 16 23 Cl -0.05 -1.22 26.79 -2.72 -0.07 -1.30 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.48 7.95 -2.39 -0.02 1.46 16 28 H 0.05 1.26 7.33 -2.39 -0.02 1.25 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.92 7.48 -2.38 -0.02 1.90 16 31 H 0.33 13.67 8.22 -89.70 -0.74 12.93 16 32 H 0.06 2.73 7.52 -2.39 -0.02 2.72 16 33 H 0.02 0.77 7.94 -2.39 -0.02 0.75 16 34 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 35 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 36 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -69.84 338.17 1.81 -68.03 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.30 Total: 15.70 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 4.18 Total: -26.33 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -4.62 Total: -103.29 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.07 Total: -1.30 kcal Total: -69.84 1.81 -68.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.311 kcal (2) G-P(sol) polarization free energy of solvation -69.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds