Wall clock time and date at job start Tue Mar 31 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46503 * 109.45178 * 181.24494 * 12 11 10 14 14 C 1.34780 * 119.99987 * 84.78906 * 13 12 11 15 15 O 1.21576 * 119.99917 * 359.97438 * 14 13 12 16 16 C 1.47610 * 119.99900 * 180.02562 * 14 13 12 17 17 N 1.31877 * 126.45854 * 359.68200 * 16 14 13 18 18 N 1.28471 * 110.15041 * 179.85652 * 17 16 14 19 19 H 0.97003 * 124.92949 * 180.16609 * 18 17 16 20 20 C 1.35730 * 110.13655 * 0.42400 * 18 17 16 21 21 C 1.35544 * 107.11362 * 359.74186 * 20 18 17 22 22 F 1.35100 * 127.23701 * 179.97438 * 21 20 18 23 23 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 24 24 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 25 25 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 27 27 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 28 28 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 29 29 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 30 30 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 31 31 H 0.96995 * 119.99932 * 264.79244 * 13 12 11 32 32 H 1.07993 * 126.44035 * 179.71084 * 20 18 17 33 33 H 1.09002 * 109.49555 * 178.74703 * 23 12 11 34 34 H 1.08999 * 109.49562 * 58.65207 * 23 12 11 35 35 H 1.08996 * 109.59017 * 246.20330 * 24 9 7 36 36 H 1.09009 * 109.58200 * 6.48305 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0395 -5.6479 2.9302 14 6 -0.0054 -6.2701 3.5113 15 8 -1.1368 -6.0450 3.1275 16 6 0.2239 -7.2238 4.6143 17 7 1.3907 -7.5649 5.1256 18 7 1.2265 -8.4155 6.0743 19 1 1.9422 -8.8074 6.5989 20 6 -0.0932 -8.6905 6.2321 21 6 -0.7671 -7.9496 5.3188 22 9 -2.1031 -7.9121 5.1216 23 6 2.0674 -4.6174 0.9645 24 6 1.8137 -3.6528 -0.1983 25 1 -0.4850 0.8400 -0.0004 26 1 0.0993 -1.3344 1.6687 27 1 -0.6775 -2.6380 0.7360 28 1 1.3427 -2.9695 3.0019 29 1 -0.3882 -3.3843 3.0516 30 1 -0.0283 -5.0408 1.2304 31 1 1.9422 -5.8272 3.2366 32 1 -0.5251 -9.3718 6.9501 33 1 2.3041 -5.6063 0.5718 34 1 2.9024 -4.2538 1.5634 35 1 1.0401 -4.0603 -0.8491 36 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003575490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:27 Heat of formation + Delta-G solvation = 16.512626 kcal Electronic energy + Delta-G solvation = -21918.062734 eV Core-core repulsion = 18354.110917 eV Total energy + Delta-G solvation = -3563.951817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.78705 -42.95011 -39.44845 -37.23427 -34.39477 -32.52082 -31.73869 -30.86554 -29.97612 -29.35844 -25.46230 -24.03997 -22.28773 -22.18975 -21.57844 -20.12531 -19.44954 -18.96009 -17.26396 -16.65819 -16.59671 -16.13295 -15.78339 -15.19971 -14.76763 -14.73747 -14.35221 -14.05885 -13.66621 -13.45893 -12.99180 -12.77876 -12.54393 -12.35377 -11.46710 -11.33332 -11.09647 -10.91153 -10.68718 -10.36858 -10.22714 -10.07942 -9.96666 -9.89306 -9.71824 -9.50393 -9.25830 -8.67175 -8.38062 -6.64298 -5.74534 -3.17776 1.19619 1.55596 2.30572 3.19195 3.35882 3.41402 3.47254 3.48208 3.97169 4.28609 4.49570 4.52899 4.83946 5.07010 5.35765 5.45153 5.50153 5.67397 5.87624 6.03318 6.12922 6.28649 6.37789 6.41339 6.48723 6.64821 6.69816 6.82231 6.94670 6.98164 7.24694 7.42298 7.71693 7.76737 7.83143 8.36238 8.49279 9.24953 9.88282 10.45256 11.33992 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.035104 B = 0.003530 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.432989 B = 7929.244503 C = 8123.971852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.707 5.707 14 C 0.595 3.405 15 O -0.522 6.522 16 C -0.023 4.023 17 N -0.234 5.234 18 N -0.372 5.372 19 H 0.456 0.544 20 C -0.041 4.041 21 C 0.037 3.963 22 F -0.099 7.099 23 C -0.138 4.138 24 C 0.149 3.851 25 H 0.255 0.745 26 H 0.089 0.911 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.401 0.599 32 H 0.198 0.802 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -18.772 13.467 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.357 5.357 14 C 0.377 3.623 15 O -0.395 6.395 16 C -0.185 4.185 17 N -0.071 5.071 18 N -0.088 5.088 19 H 0.302 0.698 20 C -0.186 4.186 21 C 0.007 3.993 22 F -0.077 7.077 23 C -0.178 4.178 24 C 0.022 3.978 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.235 0.765 32 H 0.215 0.785 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.806 -18.203 13.000 22.690 hybrid contribution 0.125 0.295 0.687 0.758 sum 3.931 -17.908 13.686 22.879 Atomic orbital electron populations 1.70025 1.05256 1.25661 1.53561 1.25061 0.95271 0.98425 1.00802 0.86371 0.78898 0.83411 0.78070 1.20905 1.21641 1.21062 1.19131 0.92519 0.84826 1.42050 0.91698 1.44094 1.35922 1.01532 1.49986 1.20756 0.88706 0.98044 0.87754 1.22587 1.00589 0.95020 1.00556 1.21136 0.98997 0.88567 0.86581 1.46160 1.09017 1.43784 1.36736 1.16746 0.85435 0.79487 0.80598 1.90865 1.22216 1.63718 1.62728 1.22415 0.89067 1.04372 1.02682 1.73648 1.24206 1.06829 1.02426 1.43016 1.07443 1.31907 1.26414 0.69822 1.22664 0.84821 1.06300 1.04777 1.17220 0.79565 1.02374 1.00100 1.91552 1.26626 1.95338 1.94230 1.22336 0.96618 0.99822 0.99048 1.20841 0.98032 0.86704 0.92271 0.93524 0.89265 0.96033 0.92598 0.92692 0.89770 0.76455 0.78510 0.92517 0.91754 0.96138 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 11.20 55.49 0.62 -25.95 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.26 -7.05 9.58 -15.06 -0.14 -7.19 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -15.00 3.00 -172.31 -0.52 -15.51 16 10 C 0.17 4.31 5.30 -3.71 -0.02 4.29 16 11 C -0.15 -3.03 5.66 -26.59 -0.15 -3.18 16 12 C 0.15 2.72 2.41 -67.87 -0.16 2.56 16 13 N -0.71 -10.98 5.07 -54.76 -0.28 -11.25 16 14 C 0.59 10.01 7.78 -12.43 -0.10 9.92 16 15 O -0.52 -10.75 16.33 5.30 0.09 -10.67 16 16 C -0.02 -0.31 7.13 -82.74 -0.59 -0.90 16 17 N -0.23 -2.47 11.91 33.43 0.40 -2.07 16 18 N -0.37 -2.36 6.86 30.63 0.21 -2.15 16 19 H 0.46 0.82 8.96 -190.44 -1.71 -0.89 16 20 C -0.04 -0.28 12.06 -16.79 -0.20 -0.49 16 21 C 0.04 0.45 8.03 -39.26 -0.32 0.14 16 22 F -0.10 -1.41 17.03 2.25 0.04 -1.38 16 23 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 24 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 25 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 31 H 0.40 5.27 8.32 -40.82 -0.34 4.93 16 32 H 0.20 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 1.18 7.93 -51.92 -0.41 0.77 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -34.53 309.21 -7.42 -41.95 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.67 Total: -0.13 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.94 Total: 5.71 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.44 Total: -56.94 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.53 -7.42 -41.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003575490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.464 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds