Wall clock time and date at job start Tue Mar 31 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00311 * 2 1 4 4 H 1.48506 * 109.47267 * 270.00365 * 3 2 1 5 5 H 1.48504 * 109.47126 * 30.00108 * 3 2 1 6 6 H 1.48498 * 109.47592 * 150.00258 * 3 2 1 7 7 C 1.38817 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 197.35788 * 7 2 1 9 9 N 1.36933 * 119.99942 * 17.35708 * 7 2 1 10 10 C 1.46920 * 120.63255 * 207.66375 * 9 7 2 11 11 C 1.53198 * 108.78014 * 233.63274 * 10 9 7 12 12 C 1.53042 * 109.31012 * 305.36891 * 11 10 9 13 13 C 1.53032 * 109.54113 * 61.36160 * 12 11 10 14 14 H 1.09003 * 109.52674 * 58.60170 * 13 12 11 15 15 N 1.46504 * 109.49873 * 178.68227 * 13 12 11 16 16 C 1.34781 * 119.99930 * 204.83697 * 15 13 12 17 17 O 1.21578 * 120.00042 * 0.02562 * 16 15 13 18 18 C 1.47608 * 119.99778 * 180.27539 * 16 15 13 19 19 N 1.31872 * 126.45999 * 359.75346 * 18 16 15 20 20 N 1.28471 * 110.15833 * 180.02562 * 19 18 16 21 21 H 0.97002 * 124.93720 * 179.97438 * 20 19 18 22 22 C 1.35736 * 110.13000 * 359.97438 * 20 19 18 23 23 C 1.35536 * 107.11607 * 359.73045 * 22 20 19 24 24 F 1.35103 * 127.24667 * 180.25970 * 23 22 20 25 25 C 1.46932 * 120.62995 * 27.69095 * 9 7 2 26 26 H 0.96996 * 119.99757 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.58889 * 353.41960 * 10 9 7 28 28 H 1.09005 * 109.58612 * 113.70203 * 10 9 7 29 29 H 1.08997 * 109.49425 * 65.31422 * 11 10 9 30 30 H 1.08997 * 109.49578 * 185.41291 * 11 10 9 31 31 H 1.09005 * 109.45779 * 301.34191 * 12 11 10 32 32 H 1.08997 * 109.45720 * 181.38580 * 12 11 10 33 33 H 0.96993 * 120.00082 * 24.84129 * 15 13 12 34 34 H 1.07999 * 126.44060 * 179.97438 * 22 20 19 35 35 H 1.09003 * 109.58669 * 6.58053 * 25 9 7 36 36 H 1.09000 * 109.58391 * 246.15447 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3548 10 6 1.8195 -3.6548 0.1784 11 6 2.0751 -4.6090 -0.9925 12 6 0.8196 -4.6884 -1.8641 13 6 0.5014 -3.3029 -2.4306 14 1 1.3497 -2.9440 -3.0136 15 7 -0.6822 -3.3860 -3.2900 16 6 -0.8702 -2.4777 -4.2678 17 8 -0.0572 -1.5896 -4.4371 18 6 -2.0658 -2.5579 -5.1297 19 7 -3.0235 -3.4617 -5.0592 20 7 -3.9122 -3.2362 -5.9591 21 1 -4.7096 -3.7707 -6.0986 22 6 -3.5734 -2.1412 -6.6862 23 6 -2.4040 -1.6751 -6.1840 24 9 -1.7058 -0.5972 -6.6035 25 6 0.2279 -2.3339 -1.2760 26 1 -0.4849 0.8400 0.0004 27 1 2.7401 -3.5178 0.7457 28 1 1.0482 -4.0686 0.8280 29 1 2.9089 -4.2382 -1.5886 30 1 2.3146 -5.6005 -0.6082 31 1 -0.0195 -5.0357 -1.2613 32 1 0.9905 -5.3856 -2.6843 33 1 -1.3306 -4.0946 -3.1552 34 1 -4.1327 -1.7184 -7.5077 35 1 0.0984 -1.3252 -1.6683 36 1 -0.6742 -2.6411 -0.7470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008443653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:33 Heat of formation + Delta-G solvation = -10.629917 kcal Electronic energy + Delta-G solvation = -22368.793673 eV Core-core repulsion = 18803.664867 eV Total energy + Delta-G solvation = -3565.128806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.72649 -43.71890 -40.79062 -38.89977 -35.86314 -34.49272 -33.03871 -31.90903 -31.62975 -30.37134 -27.25394 -25.69494 -23.94710 -23.37465 -22.71366 -21.43152 -20.88224 -19.85648 -18.76229 -18.26098 -17.47860 -17.23246 -16.97165 -16.71436 -16.06689 -15.92049 -15.76531 -15.45478 -15.27326 -15.15040 -14.70358 -14.17067 -14.01982 -13.66905 -13.45124 -12.93902 -12.70346 -12.52464 -12.27689 -12.18482 -12.03903 -11.73840 -11.64129 -11.28421 -11.18257 -10.70228 -10.56963 -10.16425 -10.02390 -8.70641 -7.89817 -5.35617 0.28231 0.79096 1.39826 1.46617 1.51713 1.70210 2.06132 2.21390 2.48879 3.00997 3.26946 3.53845 3.73172 3.81818 3.90853 4.03163 4.13699 4.26710 4.42776 4.48114 4.60625 4.82264 4.91981 5.09439 5.14662 5.20608 5.21154 5.31494 5.40048 5.52993 5.61384 5.75174 5.91999 6.34376 6.42339 6.65691 7.09881 7.18009 7.84231 8.33476 9.15105 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.005527 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.235363 B = 5064.817413 C = 6242.192102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.051 4.051 3 Si 0.961 3.039 4 H -0.296 1.296 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.265 4.265 8 H 0.071 0.929 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.121 4.121 12 C -0.106 4.106 13 C 0.129 3.871 14 H 0.054 0.946 15 N -0.691 5.691 16 C 0.587 3.413 17 O -0.574 6.574 18 C -0.057 4.057 19 N -0.231 5.231 20 N -0.339 5.339 21 H 0.480 0.520 22 C 0.012 3.988 23 C -0.015 4.015 24 F -0.123 7.123 25 C 0.178 3.822 26 H 0.247 0.753 27 H 0.057 0.943 28 H 0.023 0.977 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.415 0.585 34 H 0.253 0.747 35 H 0.042 0.958 36 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 -13.017 -13.590 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.247 4.247 3 Si 0.790 3.210 4 H -0.224 1.224 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.395 4.395 8 H 0.089 0.911 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.144 4.144 13 C 0.023 3.977 14 H 0.072 0.928 15 N -0.342 5.342 16 C 0.372 3.628 17 O -0.451 6.451 18 C -0.217 4.217 19 N -0.070 5.070 20 N -0.059 5.059 21 H 0.332 0.668 22 C -0.134 4.134 23 C -0.045 4.045 24 F -0.102 7.102 25 C 0.051 3.949 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.253 0.747 34 H 0.269 0.731 35 H 0.061 0.939 36 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -10.368 -13.173 -13.050 21.244 hybrid contribution 0.079 1.839 -0.323 1.869 sum -10.289 -11.334 -13.373 20.326 Atomic orbital electron populations 1.70172 1.06767 1.25584 1.55205 1.25807 0.96044 1.01668 1.01188 0.85347 0.78686 0.79847 0.77152 1.22363 1.21687 1.18280 1.19539 0.93133 0.86221 1.40607 0.91148 1.44254 1.35935 1.02837 1.50328 1.21198 0.97651 0.85470 0.94662 1.21908 0.96833 1.00296 0.96980 1.21648 0.99295 0.93538 0.99921 1.21631 0.86607 0.98480 0.90970 0.92770 1.45705 1.26093 1.30555 1.31848 1.17282 0.83856 0.81519 0.80100 1.90846 1.46268 1.36022 1.71952 1.21928 0.98470 0.98970 1.02312 1.73545 0.99188 1.22124 1.12142 1.43218 1.19685 1.21801 1.21225 0.66829 1.23302 0.96320 0.91780 1.01999 1.17789 0.96072 0.90479 1.00146 1.91477 1.78288 1.51511 1.88935 1.20781 0.88236 0.97452 0.88404 0.94448 0.92462 0.95915 0.92909 0.88131 0.90595 0.89508 0.74749 0.73097 0.93943 0.98130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.89 11.19 21.65 0.24 -59.65 16 2 C -0.05 -3.13 4.91 84.86 0.42 -2.72 16 3 Si 0.96 49.13 29.59 68.60 2.03 51.16 16 4 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 5 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 6 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.26 -15.65 9.58 84.04 0.81 -14.84 16 8 H 0.07 4.00 7.89 -2.91 -0.02 3.98 16 9 N -0.61 -32.60 2.99 -699.07 -2.09 -34.70 16 10 C 0.13 5.60 6.52 86.37 0.56 6.16 16 11 C -0.12 -3.87 6.08 30.67 0.19 -3.68 16 12 C -0.11 -3.29 5.35 30.62 0.16 -3.13 16 13 C 0.13 5.38 2.60 45.07 0.12 5.50 16 14 H 0.05 2.60 7.58 -2.39 -0.02 2.58 16 15 N -0.69 -25.34 5.08 -445.25 -2.26 -27.60 16 16 C 0.59 24.38 7.79 86.72 0.68 25.05 16 17 O -0.57 -30.00 16.33 -3.96 -0.06 -30.06 16 18 C -0.06 -1.83 7.13 42.44 0.30 -1.52 16 19 N -0.23 -5.25 11.91 -48.15 -0.57 -5.82 16 20 N -0.34 -4.06 6.87 -56.99 -0.39 -4.45 16 21 H 0.48 0.59 8.96 -219.99 -1.97 -1.38 16 22 C 0.01 0.17 12.06 83.46 1.01 1.17 16 23 C -0.02 -0.43 8.03 22.48 0.18 -0.25 16 24 F -0.12 -4.30 17.03 44.97 0.77 -3.53 16 25 C 0.18 9.44 4.89 86.36 0.42 9.86 16 26 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 28 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.42 12.15 8.32 -92.71 -0.77 11.38 16 34 H 0.25 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.04 2.70 6.03 -2.39 -0.01 2.68 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 Total: -1.00 -88.03 309.19 0.88 -87.14 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -1.61 Total: 5.90 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 4.84 Total: 21.61 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -5.08 Total: -132.22 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.06 Total: -30.06 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.77 Total: -3.53 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal Total: -88.03 0.88 -87.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008443653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.514 kcal (2) G-P(sol) polarization free energy of solvation -88.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds