Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99785 * 2 1 4 4 H 1.48499 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47326 * 300.00401 * 3 2 1 6 6 H 1.48504 * 109.47048 * 60.00417 * 3 2 1 7 7 C 1.38813 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00290 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65173 * 14.65908 * 9 7 2 11 11 C 1.54911 * 104.92922 * 155.83959 * 10 9 7 12 12 C 1.55442 * 101.44776 * 37.00640 * 11 10 9 13 13 C 1.47022 * 125.64936 * 194.69117 * 9 7 2 14 14 H 1.09004 * 109.88152 * 300.45541 * 13 9 7 15 15 C 1.52995 * 109.88250 * 61.61637 * 13 9 7 16 16 N 1.46504 * 109.47162 * 183.75215 * 15 13 9 17 17 C 1.34776 * 120.00076 * 185.66222 * 16 15 13 18 18 O 1.21576 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.47620 * 120.00166 * 179.97438 * 17 16 15 20 20 N 1.31873 * 126.45690 * 359.67996 * 19 17 16 21 21 N 1.28464 * 110.15161 * 179.81878 * 20 19 17 22 22 H 0.96996 * 124.93128 * 180.19893 * 21 20 19 23 23 C 1.35726 * 110.13540 * 0.46035 * 21 20 19 24 24 C 1.35537 * 107.11845 * 359.72592 * 23 21 20 25 25 F 1.35097 * 127.24630 * 179.97438 * 24 23 21 26 26 H 0.96995 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.08994 * 110.36886 * 274.73760 * 10 9 7 28 28 H 1.09004 * 110.36338 * 36.94675 * 10 9 7 29 29 H 1.08996 * 111.00122 * 155.14411 * 11 10 9 30 30 H 1.09003 * 111.00200 * 278.99546 * 11 10 9 31 31 H 1.09007 * 110.70398 * 206.14176 * 12 11 10 32 32 H 1.09003 * 110.70476 * 82.89152 * 12 11 10 33 33 H 1.09008 * 109.47209 * 303.74906 * 15 13 9 34 34 H 1.08996 * 109.47315 * 63.75037 * 15 13 9 35 35 H 0.97000 * 120.00053 * 5.65463 * 16 15 13 36 36 H 1.08000 * 126.44083 * 179.72307 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1078 -2.5527 -0.3032 11 6 -0.2496 -4.0208 -0.7768 12 6 0.7644 -4.7442 0.1530 13 6 1.8982 -3.7080 0.3019 14 1 2.7011 -3.9335 -0.4000 15 6 2.4351 -3.7264 1.7345 16 7 3.0828 -5.0141 1.9967 17 6 3.5313 -5.3031 3.2343 18 8 3.3988 -4.4952 4.1331 19 6 4.1835 -6.6008 3.4987 20 7 4.3874 -7.5677 2.6254 21 7 4.9839 -8.5554 3.1900 22 1 5.2397 -9.3781 2.7443 23 6 5.1990 -8.2832 4.5022 24 6 4.7024 -7.0446 4.7393 25 9 4.7020 -6.3745 5.9123 26 1 -0.4850 0.8400 0.0004 27 1 -0.7064 -2.3832 0.5918 28 1 -0.4093 -1.8676 -1.0956 29 1 -1.2630 -4.3876 -0.6137 30 1 0.0377 -4.1232 -1.8233 31 1 1.1344 -5.6561 -0.3158 32 1 0.3122 -4.9628 1.1204 33 1 3.1603 -2.9225 1.8611 34 1 1.6107 -3.5854 2.4333 35 1 3.1888 -5.6586 1.2796 36 1 5.6761 -8.9317 5.2221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028120412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = 20.591483 kcal Electronic energy + Delta-G solvation = -21832.271814 eV Core-core repulsion = 18268.496869 eV Total energy + Delta-G solvation = -3563.774944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.75239 -42.90837 -39.19713 -37.52827 -34.24093 -32.49112 -32.08015 -30.84377 -29.60629 -28.61780 -25.29362 -24.42177 -23.12725 -22.00407 -20.40278 -20.01560 -19.56112 -19.01145 -17.32039 -16.59504 -16.48867 -16.10820 -15.80714 -15.21612 -14.84726 -14.70634 -14.52130 -14.30177 -13.82111 -13.41829 -12.97737 -12.71714 -12.05683 -11.86014 -11.71380 -11.30686 -11.28009 -10.91362 -10.77764 -10.21877 -10.10916 -9.99518 -9.84946 -9.83949 -9.76345 -9.66562 -9.22198 -8.64152 -8.54317 -6.81332 -5.74391 -3.10995 1.24393 1.59910 2.34695 3.26701 3.42037 3.42656 3.48887 3.50693 4.02527 4.32610 4.51854 4.53410 4.88596 5.13861 5.36947 5.44569 5.54401 5.65974 5.85036 6.06102 6.10135 6.17136 6.28985 6.45824 6.48942 6.57705 6.64588 6.72629 6.83792 7.08826 7.29042 7.54391 7.64222 7.81851 7.82349 8.27874 8.43766 9.20008 9.80509 10.47908 11.37690 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.004047 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.618793 B = 6916.469349 C = 7702.824203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.108 3.892 16 N -0.705 5.705 17 C 0.591 3.409 18 O -0.524 6.524 19 C -0.022 4.022 20 N -0.234 5.234 21 N -0.372 5.372 22 H 0.455 0.545 23 C -0.041 4.041 24 C 0.037 3.963 25 F -0.099 7.099 26 H 0.253 0.747 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.271 -20.450 4.107 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.362 4.362 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.356 5.356 17 C 0.373 3.627 18 O -0.399 6.399 19 C -0.184 4.184 20 N -0.071 5.071 21 N -0.088 5.088 22 H 0.302 0.698 23 C -0.186 4.186 24 C 0.007 3.993 25 F -0.078 7.078 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.906 -19.772 3.671 21.608 hybrid contribution 0.830 0.362 0.680 1.133 sum 8.737 -19.409 4.352 21.725 Atomic orbital electron populations 1.69948 1.05029 1.25195 1.55947 1.24916 0.95671 0.97866 1.01373 0.86074 0.78957 0.83684 0.77236 1.20354 1.21745 1.21577 1.19044 0.90460 0.82158 1.44533 0.90543 1.44502 1.06404 1.01011 1.79380 1.21456 0.84774 0.90205 0.98868 1.23054 0.97529 0.99609 0.98525 1.22659 0.97051 0.96980 0.99744 1.21129 0.94596 0.88107 0.91815 0.94378 1.22342 0.97223 0.82623 0.99507 1.45970 1.59111 1.20506 1.09984 1.16772 0.78720 0.83542 0.83619 1.90863 1.56739 1.47823 1.44427 1.22432 1.07872 0.97080 0.91023 1.73649 1.12597 0.96034 1.24780 1.43010 1.42774 1.15909 1.07119 0.69846 1.22650 1.08820 0.98529 0.88612 1.17223 1.06753 0.92035 0.83308 1.91548 1.94854 1.79054 1.42346 0.93660 0.95572 0.90959 0.92331 0.92313 0.92334 0.91803 0.91145 0.91244 0.76375 0.78551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.57 55.49 0.59 -26.22 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.23 -6.45 9.73 -15.06 -0.15 -6.59 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -14.75 3.13 -162.58 -0.51 -15.26 16 10 C 0.17 4.13 5.41 -2.53 -0.01 4.11 16 11 C -0.15 -2.75 7.11 -24.43 -0.17 -2.92 16 12 C -0.13 -2.16 6.18 -24.75 -0.15 -2.31 16 13 C 0.15 3.05 3.20 -66.96 -0.21 2.84 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 15 C 0.11 2.15 5.09 -4.04 -0.02 2.13 16 16 N -0.70 -11.57 5.34 -61.32 -0.33 -11.89 16 17 C 0.59 10.41 7.82 -12.43 -0.10 10.31 16 18 O -0.52 -11.34 16.66 5.30 0.09 -11.26 16 19 C -0.02 -0.30 7.13 -82.74 -0.59 -0.89 16 20 N -0.23 -2.54 11.91 33.43 0.40 -2.14 16 21 N -0.37 -2.45 6.86 30.63 0.21 -2.24 16 22 H 0.46 0.92 8.96 -190.45 -1.71 -0.79 16 23 C -0.04 -0.30 12.06 -16.79 -0.20 -0.50 16 24 C 0.04 0.46 8.03 -39.26 -0.32 0.15 16 25 F -0.10 -1.46 17.03 2.25 0.04 -1.42 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 28 H 0.07 1.93 6.93 -51.93 -0.36 1.57 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.06 1.09 7.79 -51.93 -0.40 0.69 16 33 H 0.07 1.57 7.88 -51.92 -0.41 1.16 16 34 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 35 H 0.40 5.56 8.11 -40.82 -0.33 5.23 16 36 H 0.20 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -34.65 312.14 -7.56 -42.21 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.71 Total: 0.06 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.02 Total: 6.20 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.36 Total: -57.75 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.65 -7.56 -42.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028120412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.803 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds