Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99785 * 2 1 4 4 H 1.48499 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47326 * 300.00401 * 3 2 1 6 6 H 1.48504 * 109.47048 * 60.00417 * 3 2 1 7 7 C 1.38813 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00290 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65173 * 14.65908 * 9 7 2 11 11 C 1.54911 * 104.92922 * 155.83959 * 10 9 7 12 12 C 1.55442 * 101.44776 * 37.00640 * 11 10 9 13 13 C 1.47022 * 125.64936 * 194.69117 * 9 7 2 14 14 H 1.09004 * 109.88152 * 300.45541 * 13 9 7 15 15 C 1.52995 * 109.88250 * 61.61637 * 13 9 7 16 16 N 1.46504 * 109.47162 * 183.75215 * 15 13 9 17 17 C 1.34776 * 120.00076 * 185.66222 * 16 15 13 18 18 O 1.21576 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.47620 * 120.00166 * 179.97438 * 17 16 15 20 20 N 1.31873 * 126.45690 * 359.67996 * 19 17 16 21 21 N 1.28464 * 110.15161 * 179.81878 * 20 19 17 22 22 H 0.96996 * 124.93128 * 180.19893 * 21 20 19 23 23 C 1.35726 * 110.13540 * 0.46035 * 21 20 19 24 24 C 1.35537 * 107.11845 * 359.72592 * 23 21 20 25 25 F 1.35097 * 127.24630 * 179.97438 * 24 23 21 26 26 H 0.96995 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.08994 * 110.36886 * 274.73760 * 10 9 7 28 28 H 1.09004 * 110.36338 * 36.94675 * 10 9 7 29 29 H 1.08996 * 111.00122 * 155.14411 * 11 10 9 30 30 H 1.09003 * 111.00200 * 278.99546 * 11 10 9 31 31 H 1.09007 * 110.70398 * 206.14176 * 12 11 10 32 32 H 1.09003 * 110.70476 * 82.89152 * 12 11 10 33 33 H 1.09008 * 109.47209 * 303.74906 * 15 13 9 34 34 H 1.08996 * 109.47315 * 63.75037 * 15 13 9 35 35 H 0.97000 * 120.00053 * 5.65463 * 16 15 13 36 36 H 1.08000 * 126.44083 * 179.72307 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1078 -2.5527 -0.3032 11 6 -0.2496 -4.0208 -0.7768 12 6 0.7644 -4.7442 0.1530 13 6 1.8982 -3.7080 0.3019 14 1 2.7011 -3.9335 -0.4000 15 6 2.4351 -3.7264 1.7345 16 7 3.0828 -5.0141 1.9967 17 6 3.5313 -5.3031 3.2343 18 8 3.3988 -4.4952 4.1331 19 6 4.1835 -6.6008 3.4987 20 7 4.3874 -7.5677 2.6254 21 7 4.9839 -8.5554 3.1900 22 1 5.2397 -9.3781 2.7443 23 6 5.1990 -8.2832 4.5022 24 6 4.7024 -7.0446 4.7393 25 9 4.7020 -6.3745 5.9123 26 1 -0.4850 0.8400 0.0004 27 1 -0.7064 -2.3832 0.5918 28 1 -0.4093 -1.8676 -1.0956 29 1 -1.2630 -4.3876 -0.6137 30 1 0.0377 -4.1232 -1.8233 31 1 1.1344 -5.6561 -0.3158 32 1 0.3122 -4.9628 1.1204 33 1 3.1603 -2.9225 1.8611 34 1 1.6107 -3.5854 2.4333 35 1 3.1888 -5.6586 1.2796 36 1 5.6761 -8.9317 5.2221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028120412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = -6.337332 kcal Electronic energy + Delta-G solvation = -21833.439535 eV Core-core repulsion = 18268.496869 eV Total energy + Delta-G solvation = -3564.942665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.71065 -43.70890 -40.66219 -39.21972 -35.83469 -34.42035 -33.03984 -31.65734 -31.37886 -30.29385 -26.89173 -26.18834 -24.44623 -22.84075 -22.04478 -21.45344 -21.08610 -19.89932 -18.87654 -18.10651 -17.50415 -17.34442 -16.96366 -16.66754 -16.25136 -16.03218 -15.91786 -15.67207 -15.46734 -14.85864 -14.61521 -13.96969 -13.66476 -13.59672 -13.40381 -13.00702 -12.85893 -12.68725 -12.17143 -11.98244 -11.90236 -11.74171 -11.49728 -11.41625 -11.36112 -10.71238 -10.68433 -10.15383 -10.00074 -8.86343 -7.88606 -5.26400 0.27941 0.80860 1.44051 1.46590 1.55840 1.70582 2.07383 2.14202 2.49405 3.02076 3.31317 3.54415 3.72082 3.83875 3.90782 3.98191 4.03193 4.26396 4.43340 4.45241 4.54728 4.72141 4.94490 4.99074 5.13744 5.17772 5.19330 5.30508 5.47291 5.54907 5.66613 5.78499 5.92886 6.22895 6.38622 6.65043 7.08607 7.10890 7.75765 8.41821 9.22570 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.004047 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.618793 B = 6916.469349 C = 7702.824203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.113 4.113 13 C 0.149 3.851 14 H 0.054 0.946 15 C 0.127 3.873 16 N -0.690 5.690 17 C 0.589 3.411 18 O -0.577 6.577 19 C -0.056 4.056 20 N -0.231 5.231 21 N -0.339 5.339 22 H 0.479 0.521 23 C 0.011 3.989 24 C -0.012 4.012 25 F -0.122 7.122 26 H 0.248 0.752 27 H -0.009 1.009 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.418 0.582 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 -24.331 3.483 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.071 0.929 15 C 0.001 3.999 16 N -0.342 5.342 17 C 0.374 3.626 18 O -0.455 6.455 19 C -0.216 4.216 20 N -0.070 5.070 21 N -0.059 5.059 22 H 0.331 0.669 23 C -0.135 4.135 24 C -0.042 4.042 25 F -0.101 7.101 26 H 0.057 0.943 27 H 0.009 0.991 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.256 0.744 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 9.705 -23.735 2.996 25.817 hybrid contribution 0.364 1.398 0.880 1.692 sum 10.069 -22.337 3.876 24.806 Atomic orbital electron populations 1.70146 1.06299 1.25349 1.57519 1.25684 0.96511 1.00984 1.02050 0.85113 0.78323 0.79806 0.76738 1.19162 1.21398 1.22237 1.19355 0.90799 0.83576 1.43258 0.90494 1.44768 1.06886 1.02104 1.79737 1.21279 0.84020 0.93546 0.96362 1.22921 0.99561 0.95227 0.99347 1.22646 0.95200 0.97386 0.99873 1.21326 0.96151 0.86852 0.91504 0.92871 1.21815 0.95555 0.83569 0.98944 1.45658 1.58586 1.19385 1.10522 1.17275 0.77901 0.84585 0.82863 1.90824 1.58800 1.50001 1.45906 1.21854 1.10413 0.96537 0.92804 1.73572 1.12910 0.96212 1.24282 1.43233 1.40016 1.15559 1.07126 0.66861 1.23311 1.04962 0.96350 0.88873 1.17727 1.09724 0.94279 0.82452 1.91479 1.95287 1.79930 1.43386 0.94291 0.99063 0.94408 0.89847 0.90929 0.87780 0.91865 0.94346 0.94072 0.74447 0.73257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.85 10.57 21.65 0.23 -57.62 16 2 C -0.06 -3.40 5.47 84.86 0.46 -2.94 16 3 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.24 -13.68 9.73 84.03 0.82 -12.86 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.61 -31.32 3.13 -668.27 -2.09 -33.41 16 10 C 0.17 8.55 5.41 86.86 0.47 9.02 16 11 C -0.13 -4.65 7.11 32.09 0.23 -4.42 16 12 C -0.11 -3.59 6.18 31.88 0.20 -3.39 16 13 C 0.15 5.91 3.20 45.34 0.15 6.06 16 14 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 15 C 0.13 5.23 5.09 86.38 0.44 5.67 16 16 N -0.69 -22.56 5.34 -466.18 -2.49 -25.04 16 17 C 0.59 21.18 7.82 86.72 0.68 21.86 16 18 O -0.58 -26.41 16.66 -3.96 -0.07 -26.47 16 19 C -0.06 -1.52 7.13 42.45 0.30 -1.22 16 20 N -0.23 -4.29 11.91 -48.15 -0.57 -4.86 16 21 N -0.34 -2.83 6.86 -56.99 -0.39 -3.22 16 22 H 0.48 -0.87 8.96 -220.00 -1.97 -2.85 16 23 C 0.01 0.11 12.06 83.47 1.01 1.12 16 24 C -0.01 -0.28 8.03 22.47 0.18 -0.10 16 25 F -0.12 -3.61 17.03 44.97 0.77 -2.84 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H -0.01 -0.48 8.06 -2.39 -0.02 -0.50 16 28 H 0.04 2.10 6.93 -2.39 -0.02 2.08 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.06 2.04 7.79 -2.39 -0.02 2.02 16 33 H 0.04 1.81 7.88 -2.38 -0.02 1.79 16 34 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 35 H 0.42 10.79 8.11 -92.71 -0.75 10.04 16 36 H 0.25 -0.30 8.06 -2.91 -0.02 -0.33 16 Total: -1.00 -83.01 312.14 0.75 -82.26 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -1.59 Total: 3.20 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 4.93 Total: 18.81 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.32 Total: -124.16 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.07 Total: -26.47 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.77 Total: -2.84 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -83.01 0.75 -82.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028120412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.923 kcal (2) G-P(sol) polarization free energy of solvation -83.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds