Wall clock time and date at job start Tue Mar 31 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99507 * 2 1 4 4 H 1.48507 * 109.47268 * 87.06867 * 3 2 1 5 5 H 1.48503 * 109.47334 * 327.06629 * 3 2 1 6 6 H 1.48504 * 109.47316 * 207.06387 * 3 2 1 7 7 C 1.38807 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99513 * 13.44980 * 7 2 1 9 9 N 1.36934 * 120.00479 * 193.44545 * 7 2 1 10 10 C 1.47430 * 125.64412 * 38.54936 * 9 7 2 11 11 C 1.54697 * 104.94062 * 204.07491 * 10 9 7 12 12 C 1.55163 * 101.67361 * 323.27936 * 11 10 9 13 13 C 1.47019 * 125.65161 * 218.85838 * 9 7 2 14 14 H 1.08997 * 109.88155 * 59.48863 * 13 9 7 15 15 C 1.53001 * 109.88276 * 298.31839 * 13 9 7 16 16 N 1.46501 * 109.46554 * 61.70519 * 15 13 9 17 17 C 1.34783 * 119.99854 * 186.19582 * 16 15 13 18 18 O 1.21587 * 119.99664 * 0.02562 * 17 16 15 19 19 C 1.47611 * 120.00312 * 180.02562 * 17 16 15 20 20 N 1.31869 * 126.45638 * 0.02562 * 19 17 16 21 21 N 1.28472 * 110.15393 * 179.97438 * 20 19 17 22 22 H 0.96999 * 124.93321 * 180.02562 * 21 20 19 23 23 C 1.35727 * 110.13148 * 0.02562 * 21 20 19 24 24 C 1.35545 * 107.11876 * 359.72565 * 23 21 20 25 25 F 1.35097 * 127.24324 * 180.29212 * 24 23 21 26 26 H 0.96996 * 120.00469 * 0.02562 * 1 2 3 27 27 H 1.09002 * 110.36932 * 323.00272 * 10 9 7 28 28 H 1.09000 * 110.36775 * 85.32566 * 10 9 7 29 29 H 1.08994 * 111.10198 * 205.11221 * 11 10 9 30 30 H 1.08997 * 110.81766 * 81.31968 * 11 10 9 31 31 H 1.09000 * 110.71826 * 276.97149 * 12 11 10 32 32 H 1.08997 * 110.71689 * 153.70409 * 12 11 10 33 33 H 1.09000 * 109.47209 * 181.70353 * 15 13 9 34 34 H 1.09001 * 109.46778 * 301.70956 * 15 13 9 35 35 H 0.96997 * 120.00763 * 6.19759 * 16 15 13 36 36 H 1.08000 * 126.44033 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4356 2.0824 1.3983 5 1 1.4799 2.6340 -0.7612 6 1 3.5774 1.4233 -0.6370 7 6 2.0104 -1.2020 0.0005 8 1 1.4926 -2.1246 -0.2166 9 7 3.3516 -1.2181 0.2763 10 6 4.0316 -0.3841 1.2840 11 6 5.5004 -0.2992 0.8061 12 6 5.7253 -1.7216 0.2283 13 6 4.3528 -2.0653 -0.3879 14 1 4.3641 -1.8566 -1.4577 15 6 4.0288 -3.5410 -0.1461 16 7 2.7197 -3.8545 -0.7243 17 6 2.1680 -5.0679 -0.5247 18 8 2.7566 -5.9021 0.1356 19 6 0.8493 -5.3841 -1.1077 20 7 0.1036 -4.5806 -1.8408 21 7 -0.9822 -5.1752 -2.1842 22 1 -1.6838 -4.7812 -2.7258 23 6 -1.0051 -6.4347 -1.6789 24 6 0.1491 -6.6092 -0.9900 25 9 0.5468 -7.7179 -0.3284 26 1 -0.4850 0.8400 -0.0004 27 1 3.5852 0.6097 1.3178 28 1 3.9809 -0.8572 2.2647 29 1 6.1741 -0.1056 1.6407 30 1 5.6125 0.4593 0.0314 31 1 5.9787 -2.4246 1.0218 32 1 6.4999 -1.7083 -0.5384 33 1 4.7915 -4.1622 -0.6156 34 1 4.0091 -3.7376 0.9259 35 1 2.2500 -3.1889 -1.2507 36 1 -1.7928 -7.1626 -1.8057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028120413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:30 Heat of formation + Delta-G solvation = 3.723306 kcal Electronic energy + Delta-G solvation = -22503.684589 eV Core-core repulsion = 18939.178186 eV Total energy + Delta-G solvation = -3564.506403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.69804 -43.66966 -40.63689 -39.33990 -35.56269 -34.61119 -33.01101 -31.75571 -31.61200 -30.74477 -26.89201 -25.98867 -24.41210 -22.84947 -22.29293 -21.43188 -20.91449 -19.91750 -19.02161 -17.94401 -17.80305 -17.42979 -16.96625 -16.85437 -16.38448 -16.02884 -15.90385 -15.48569 -15.22103 -14.92160 -14.81893 -14.21606 -13.85867 -13.63197 -13.52322 -13.01822 -12.94543 -12.61394 -12.25006 -12.10601 -12.04017 -11.71855 -11.48960 -11.36191 -11.21202 -10.68590 -10.65843 -10.05761 -9.89480 -8.68143 -8.12039 -5.58753 0.36030 0.83526 1.32218 1.40984 1.52600 1.77580 2.15878 2.29923 2.45815 3.07865 3.13620 3.36154 3.57797 3.85772 3.93071 3.99870 4.02757 4.16272 4.32821 4.43162 4.48997 4.68107 4.75336 4.87098 5.00716 5.02406 5.16123 5.22429 5.32742 5.49102 5.50912 5.94430 5.97734 6.26482 6.45034 6.70399 6.86173 7.15066 7.57604 8.24823 9.04406 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.005887 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.521287 B = 4755.125843 C = 5948.142621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.022 4.022 3 Si 0.952 3.048 4 H -0.289 1.289 5 H -0.315 1.315 6 H -0.251 1.251 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.619 5.619 10 C 0.103 3.897 11 C -0.125 4.125 12 C -0.109 4.109 13 C 0.139 3.861 14 H 0.050 0.950 15 C 0.117 3.883 16 N -0.693 5.693 17 C 0.587 3.413 18 O -0.577 6.577 19 C -0.061 4.061 20 N -0.242 5.242 21 N -0.347 5.347 22 H 0.475 0.525 23 C 0.008 3.992 24 C -0.009 4.009 25 F -0.116 7.116 26 H 0.260 0.740 27 H 0.022 0.978 28 H 0.028 0.972 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.416 0.584 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 -8.288 -6.002 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.218 4.218 3 Si 0.783 3.217 4 H -0.217 1.217 5 H -0.244 1.244 6 H -0.176 1.176 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.163 4.163 12 C -0.147 4.147 13 C 0.032 3.968 14 H 0.068 0.932 15 C -0.008 4.008 16 N -0.344 5.344 17 C 0.372 3.628 18 O -0.457 6.457 19 C -0.221 4.221 20 N -0.080 5.080 21 N -0.066 5.066 22 H 0.326 0.674 23 C -0.138 4.138 24 C -0.039 4.039 25 F -0.095 7.095 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.256 0.744 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.860 -7.717 -5.984 10.176 hybrid contribution -0.773 0.509 0.321 0.980 sum 2.087 -7.208 -5.663 9.401 Atomic orbital electron populations 1.69909 1.07247 1.27009 1.55110 1.26103 0.95778 1.01081 0.98850 0.85714 0.79221 0.80063 0.76715 1.21689 1.24394 1.17558 1.18779 0.82486 0.93110 1.42722 0.90950 1.44842 1.03239 1.46830 1.39618 1.22042 0.93579 0.93702 0.92725 1.22720 0.94625 0.97586 1.01395 1.22523 0.94558 0.96388 1.01268 1.21520 0.90250 0.88347 0.96634 0.93184 1.22034 0.83287 0.97718 0.97759 1.46223 1.21628 1.13823 1.52768 1.17153 0.83358 0.82537 0.79755 1.90729 1.63533 1.49160 1.42279 1.22136 0.98721 0.93980 1.07261 1.73785 0.96664 1.23469 1.14100 1.43266 1.15352 1.09783 1.38163 0.67404 1.23363 0.99876 0.90380 1.00146 1.17578 0.96943 0.84776 1.04563 1.91462 1.90730 1.48464 1.78871 0.93107 0.96039 0.95403 0.88179 0.91603 0.89772 0.87928 0.90245 0.93313 0.74435 0.72932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.76 13.97 21.65 0.30 -57.46 16 2 C -0.02 -1.24 5.48 84.86 0.46 -0.77 16 3 Si 0.95 46.17 24.76 68.60 1.70 47.87 16 4 H -0.29 -13.85 6.85 99.48 0.68 -13.17 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.25 -11.33 6.77 99.48 0.67 -10.66 16 7 C -0.24 -13.13 9.41 84.03 0.79 -12.34 16 8 H 0.07 4.21 5.45 -2.91 -0.02 4.19 16 9 N -0.62 -28.10 2.65 -668.69 -1.77 -29.87 16 10 C 0.10 4.21 6.14 86.78 0.53 4.75 16 11 C -0.13 -3.71 7.07 31.91 0.23 -3.48 16 12 C -0.11 -2.94 6.48 31.78 0.21 -2.74 16 13 C 0.14 5.02 3.34 45.34 0.15 5.17 16 14 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.12 4.36 5.18 86.38 0.45 4.81 16 16 N -0.69 -28.79 4.36 -466.18 -2.03 -30.82 16 17 C 0.59 25.39 7.82 86.72 0.68 26.07 16 18 O -0.58 -27.46 16.65 -3.99 -0.07 -27.52 16 19 C -0.06 -2.30 7.13 42.44 0.30 -1.99 16 20 N -0.24 -8.19 11.91 -48.16 -0.57 -8.76 16 21 N -0.35 -7.47 6.86 -56.99 -0.39 -7.86 16 22 H 0.48 5.86 8.96 -219.99 -1.97 3.89 16 23 C 0.01 0.16 12.06 83.47 1.01 1.17 16 24 C -0.01 -0.27 8.03 22.48 0.18 -0.09 16 25 F -0.12 -4.00 17.03 44.97 0.77 -3.24 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.02 0.96 3.19 -2.39 -0.01 0.96 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 1.97 7.95 -2.39 -0.02 1.96 16 31 H 0.08 2.07 7.85 -2.39 -0.02 2.05 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.05 1.99 8.12 -2.39 -0.02 1.97 16 35 H 0.42 18.19 5.79 -92.71 -0.54 17.66 16 36 H 0.25 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -78.64 301.47 1.50 -77.15 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -1.42 Total: 19.99 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 4.99 Total: 20.54 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -4.47 Total: -134.78 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.07 Total: -27.52 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.77 Total: -3.24 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.70 Total: 47.87 kcal Total: -78.64 1.50 -77.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028120413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.869 kcal (2) G-P(sol) polarization free energy of solvation -78.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds