Wall clock time and date at job start Tue Mar 31 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47091 * 240.00251 * 3 2 1 5 5 H 1.48498 * 109.47393 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46959 * 120.00664 * 3 2 1 7 7 C 1.37879 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99651 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.53117 * 109.52175 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.27761 * 177.62929 * 10 9 7 12 12 N 1.46850 * 109.51768 * 300.81210 * 11 10 9 13 13 C 1.46897 * 110.99843 * 185.84205 * 12 11 10 14 14 C 1.50703 * 109.47234 * 170.00468 * 13 12 11 15 15 C 1.38813 * 120.81066 * 89.99461 * 14 13 12 16 16 F 1.35104 * 120.43177 * 359.97438 * 15 14 13 17 17 C 1.38460 * 119.14250 * 180.25549 * 15 14 13 18 18 N 1.31853 * 120.77555 * 359.40591 * 17 15 14 19 19 C 1.31847 * 121.77595 * 0.63868 * 18 17 15 20 20 C 1.38454 * 120.78027 * 359.65164 * 19 18 17 21 21 F 1.35106 * 120.42612 * 180.02562 * 20 19 18 22 22 C 1.46853 * 111.19442 * 61.74558 * 12 11 10 23 23 C 1.53037 * 109.52587 * 298.25508 * 22 12 11 24 24 H 0.97004 * 120.00331 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.51969 * 59.87868 * 9 7 2 26 26 H 1.08993 * 109.50469 * 57.68047 * 10 9 7 27 27 H 1.09008 * 109.50143 * 297.55991 * 10 9 7 28 28 H 1.08991 * 109.46054 * 180.80605 * 11 10 9 29 29 H 1.08997 * 109.45778 * 60.82223 * 11 10 9 30 30 H 1.08994 * 109.47226 * 50.00037 * 13 12 11 31 31 H 1.09002 * 109.47473 * 289.99873 * 13 12 11 32 32 H 1.07994 * 119.61185 * 179.70711 * 17 15 14 33 33 H 1.08001 * 119.60826 * 179.67419 * 19 18 17 34 34 H 1.08995 * 109.46353 * 58.27501 * 22 12 11 35 35 H 1.09008 * 109.46023 * 178.23392 * 22 12 11 36 36 H 1.09004 * 109.50138 * 299.24159 * 23 22 12 37 37 H 1.09003 * 109.50280 * 179.12518 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4751 -4.9852 0.0592 12 7 0.6534 -5.0196 1.2758 13 6 0.0071 -6.3288 1.4376 14 6 -0.6220 -6.4130 2.8044 15 6 -1.9331 -6.0062 3.0100 16 9 -2.6694 -5.5257 1.9841 17 6 -2.4748 -6.0936 4.2812 18 7 -1.7646 -6.5672 5.2861 19 6 -0.5166 -6.9623 5.1289 20 6 0.0955 -6.8997 3.8885 21 9 1.3746 -7.3070 3.7354 22 6 -0.3404 -3.9384 1.2760 23 6 0.3753 -2.5859 1.2525 24 1 -0.4851 0.8400 0.0004 25 1 0.6221 -2.5566 -0.8889 26 1 2.8991 -3.5841 0.8677 27 1 2.8429 -3.6320 -0.9115 28 1 2.1804 -5.8160 0.0738 29 1 0.8315 -5.0703 -0.8163 30 1 0.7520 -7.1174 1.3312 31 1 -0.7625 -6.4508 0.6754 32 1 -3.4926 -5.7748 4.4507 33 1 0.0346 -7.3396 5.9775 34 1 -0.9754 -4.0287 0.3948 35 1 -0.9538 -4.0092 2.1743 36 1 1.0000 -2.4892 2.1405 37 1 -0.3628 -1.7839 1.2370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119804635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:45 Heat of formation + Delta-G solvation = -56.410934 kcal Electronic energy + Delta-G solvation = -22508.050727 eV Core-core repulsion = 18921.016745 eV Total energy + Delta-G solvation = -3587.033981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.19320 -49.12514 -40.17581 -38.28540 -34.65901 -32.74213 -30.86958 -30.84016 -29.85434 -27.19329 -24.94639 -23.72819 -22.71128 -22.07783 -21.11448 -18.71749 -18.23972 -18.13007 -16.76945 -16.65071 -16.25073 -15.95381 -15.47065 -15.07911 -14.74538 -14.44481 -14.25607 -13.86793 -13.68577 -13.30479 -13.00556 -12.83640 -12.46752 -12.38967 -12.07681 -11.62805 -11.47260 -10.95788 -10.76629 -10.54789 -10.26399 -10.09424 -9.98924 -9.71239 -9.45601 -9.09861 -8.98648 -8.73791 -8.29677 -7.91046 -5.97099 -4.02612 0.55867 0.66732 3.19902 3.33208 3.37778 3.40575 3.60218 3.87518 4.11265 4.22010 4.35272 4.45044 4.50759 4.87326 5.15018 5.32929 5.37478 5.50387 5.55963 5.60647 5.70463 5.81504 6.02420 6.16473 6.24529 6.32640 6.54268 6.58598 6.81809 7.02828 7.09133 7.36326 7.42133 7.52869 7.56864 7.79483 8.02720 8.13706 8.47545 9.00710 9.61822 11.09170 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.004631 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.193619 B = 6044.166850 C = 6386.827012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.062 3.938 12 N -0.528 5.528 13 C 0.088 3.912 14 C -0.098 4.098 15 C 0.087 3.913 16 F -0.116 7.116 17 C 0.061 3.939 18 N -0.433 5.433 19 C 0.059 3.941 20 C 0.098 3.902 21 F -0.115 7.115 22 C 0.055 3.945 23 C -0.103 4.103 24 H 0.260 0.740 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.028 0.972 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 -15.156 6.730 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.253 5.253 13 C -0.039 4.039 14 C -0.107 4.107 15 C 0.064 3.936 16 F -0.095 7.095 17 C -0.098 4.098 18 N -0.140 5.140 19 C -0.100 4.100 20 C 0.076 3.924 21 F -0.094 7.094 22 C -0.072 4.072 23 C -0.141 4.141 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.192 0.808 33 H 0.191 0.809 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.797 -14.996 7.885 17.363 hybrid contribution 0.355 0.903 -1.711 1.967 sum -3.442 -14.093 6.173 15.766 Atomic orbital electron populations 1.69863 1.05883 1.26457 1.50939 1.24968 0.94836 0.99018 0.95154 0.86688 0.79623 0.83275 0.78579 1.20347 1.21356 1.20311 1.21159 0.92848 0.90621 1.50321 0.92768 1.18684 0.92674 0.91813 0.93893 1.21686 0.98720 0.93474 1.00493 1.22147 0.95584 0.99742 0.89086 1.62107 1.23410 1.00654 1.39167 1.20898 0.98037 0.94849 0.90157 1.20513 0.92954 0.99234 0.98048 1.18501 0.89646 0.99000 0.86418 1.91582 1.75709 1.84981 1.57179 1.22951 1.01456 0.98821 0.86557 1.67746 1.05979 1.08425 1.31873 1.22960 0.91787 0.99643 0.95572 1.18383 0.80504 0.99403 0.94103 1.91558 1.34320 1.87360 1.96138 1.22386 0.92982 0.93071 0.98724 1.21667 1.00204 0.92756 0.99479 0.93016 0.96077 0.92374 0.92899 0.92135 0.95436 0.89169 0.93068 0.80837 0.80867 0.95409 0.93124 0.93906 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 11.37 55.43 0.63 -24.90 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.08 8.57 -34.44 -0.29 -14.38 16 8 H 0.05 1.48 7.75 -52.48 -0.41 1.07 16 9 C 0.05 1.19 2.16 -91.65 -0.20 1.00 16 10 C -0.11 -2.21 5.32 -26.65 -0.14 -2.36 16 11 C 0.06 1.09 5.46 -3.83 -0.02 1.07 16 12 N -0.53 -9.43 4.65 -236.11 -1.10 -10.53 16 13 C 0.09 1.28 4.85 -4.98 -0.02 1.26 16 14 C -0.10 -1.33 4.91 -104.20 -0.51 -1.84 16 15 C 0.09 1.13 5.94 -39.29 -0.23 0.90 16 16 F -0.12 -1.64 15.26 2.25 0.03 -1.60 16 17 C 0.06 0.69 11.17 -17.46 -0.20 0.49 16 18 N -0.43 -5.10 10.36 -13.14 -0.14 -5.23 16 19 C 0.06 0.64 11.17 -17.47 -0.20 0.45 16 20 C 0.10 1.23 7.29 -39.29 -0.29 0.95 16 21 F -0.12 -1.49 16.61 2.25 0.04 -1.46 16 22 C 0.06 1.11 4.59 -3.83 -0.02 1.09 16 23 C -0.10 -2.46 5.12 -26.65 -0.14 -2.60 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.06 0.93 8.01 -51.93 -0.42 0.52 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.17 7.57 -51.93 -0.39 0.78 16 31 H 0.05 0.73 7.71 -51.93 -0.40 0.33 16 32 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.97 5.42 -51.92 -0.28 0.69 16 36 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 2.50 6.18 -51.93 -0.32 2.17 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -29.14 306.88 -8.01 -37.16 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.74 Total: -2.06 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.35 Total: -12.37 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.60 Total: -40.66 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.14 -8.01 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119804635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.254 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds