Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47300 * 2 1 4 4 C 1.53004 * 109.47113 * 239.99724 * 2 1 3 5 5 O 1.42906 * 109.46730 * 120.00074 * 2 1 3 6 6 C 1.42900 * 113.99899 * 60.00265 * 5 2 1 7 7 C 1.50700 * 109.47111 * 179.97438 * 6 5 2 8 8 O 1.20826 * 119.99743 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00131 * 179.97438 * 7 6 5 10 10 C 1.45208 * 117.00138 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46650 * 330.00212 * 10 9 7 12 12 C 1.50702 * 109.47081 * 210.00055 * 10 9 7 13 13 H 1.07999 * 119.99782 * 273.48211 * 12 10 9 14 14 C 1.37874 * 119.99714 * 93.48607 * 12 10 9 15 15 N 1.31515 * 119.99641 * 181.27470 * 14 12 10 16 16 Si 1.86800 * 120.00343 * 1.26946 * 14 12 10 17 17 H 1.48497 * 109.46688 * 84.88845 * 16 14 12 18 18 H 1.48501 * 109.46893 * 204.88578 * 16 14 12 19 19 H 1.48497 * 109.47144 * 324.88790 * 16 14 12 20 20 C 1.50700 * 109.46782 * 89.99787 * 10 9 7 21 21 C 1.34518 * 125.78489 * 216.36005 * 20 10 9 22 22 C 1.41384 * 106.83532 * 179.89421 * 21 20 10 23 23 C 1.34513 * 106.84552 * 0.37499 * 22 21 20 24 24 O 1.34297 * 125.79063 * 36.67890 * 20 10 9 25 25 H 1.08998 * 109.47335 * 300.00147 * 1 2 3 26 26 H 1.09001 * 109.46698 * 59.99635 * 1 2 3 27 27 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47279 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47543 * 299.99848 * 3 2 1 30 30 H 1.09002 * 109.47197 * 60.00420 * 3 2 1 31 31 H 1.08996 * 109.47312 * 300.00248 * 4 2 1 32 32 H 1.09001 * 109.46754 * 60.00161 * 4 2 1 33 33 H 1.09001 * 109.46721 * 180.02562 * 4 2 1 34 34 H 1.08992 * 109.47418 * 59.99879 * 6 5 2 35 35 H 1.09004 * 109.46913 * 299.99720 * 6 5 2 36 36 H 0.97002 * 120.00261 * 179.97438 * 15 14 12 37 37 H 1.07998 * 126.58399 * 0.03717 * 21 20 10 38 38 H 1.08003 * 126.57479 * 180.16621 * 22 21 20 39 39 H 1.07998 * 125.79383 * 179.74871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5846 -2.0356 1.2645 7 6 2.1419 -2.6448 2.5251 8 8 2.8300 -1.9810 3.2639 9 8 1.8739 -3.9249 2.8273 10 6 2.4443 -4.4453 4.0570 11 1 3.3838 -3.9340 4.2665 12 6 2.6992 -5.9230 3.9065 13 1 1.9125 -6.6312 4.1209 14 6 3.9367 -6.3707 3.4951 15 7 4.1516 -7.6588 3.3397 16 14 5.3079 -5.1477 3.1585 17 1 6.0036 -4.8220 4.4294 18 1 6.2765 -5.7410 2.2020 19 1 4.7337 -3.9079 2.5767 20 6 1.4824 -4.2146 5.1939 21 6 1.8193 -3.9016 6.4580 22 6 0.6127 -3.7755 7.1841 23 6 -0.3890 -4.0272 6.3223 24 8 0.1438 -4.2926 5.1183 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.9491 -2.5916 0.4008 35 1 0.4957 -2.0778 1.2907 36 1 5.0220 -7.9738 3.0499 37 1 2.8193 -3.7694 6.8437 38 1 0.5143 -3.5282 8.2308 39 1 -1.4428 -4.0178 6.5585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123463409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -120.791181 kcal Electronic energy + Delta-G solvation = -22729.993956 eV Core-core repulsion = 19218.963002 eV Total energy + Delta-G solvation = -3511.030954 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82435 -39.74329 -38.65970 -35.67524 -33.44337 -33.16466 -32.28318 -30.64755 -28.50677 -27.53998 -27.29914 -26.75325 -22.95087 -21.19164 -20.71444 -19.91760 -19.46673 -17.59566 -17.24401 -16.79436 -16.11098 -16.02104 -15.71617 -15.18366 -14.88384 -14.49399 -14.17068 -13.74507 -13.45618 -13.18347 -12.78521 -12.43221 -12.28059 -12.15128 -12.10124 -12.03852 -11.93095 -11.85967 -11.66074 -11.40978 -11.24125 -11.01656 -10.68690 -10.17436 -9.78661 -9.75381 -9.58975 -9.56761 -9.23783 -8.99878 -7.73806 -6.53456 -4.62833 2.42723 2.90371 2.93744 3.15251 3.19196 3.29306 3.33881 3.75920 4.09272 4.17600 4.69314 4.71127 4.88125 4.95001 5.20374 5.31528 5.36367 5.40028 5.44972 5.58366 5.60839 5.61592 5.66010 5.69966 5.72295 5.90909 5.95032 6.13409 6.14044 6.17290 6.44722 6.56603 6.74985 7.04885 7.14190 7.19219 7.43353 7.88972 8.03750 8.57589 8.66853 9.03022 10.54855 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.006117 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.557951 B = 4576.617170 C = 5897.222735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 C -0.136 4.136 4 C -0.182 4.182 5 O -0.355 6.355 6 C 0.060 3.940 7 C 0.448 3.552 8 O -0.507 6.507 9 O -0.353 6.353 10 C 0.255 3.745 11 H 0.080 0.920 12 C -0.504 4.504 13 H 0.091 0.909 14 C 0.092 3.908 15 N -0.855 5.855 16 Si 0.870 3.130 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.257 1.257 20 C 0.031 3.969 21 C -0.227 4.227 22 C -0.210 4.210 23 C -0.072 4.072 24 O -0.168 6.168 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.276 0.724 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 12.649 -5.489 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.065 3.935 3 C -0.193 4.193 4 C -0.239 4.239 5 O -0.275 6.275 6 C -0.018 4.018 7 C 0.290 3.710 8 O -0.396 6.396 9 O -0.271 6.271 10 C 0.203 3.797 11 H 0.097 0.903 12 C -0.539 4.539 13 H 0.109 0.891 14 C -0.117 4.117 15 N -0.489 5.489 16 Si 0.694 3.306 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.182 1.182 20 C -0.020 4.020 21 C -0.247 4.247 22 C -0.229 4.229 23 C -0.139 4.139 24 O -0.064 6.064 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.181 12.666 -5.404 15.094 hybrid contribution 0.628 0.345 -0.001 0.717 sum -5.553 13.010 -5.405 15.143 Atomic orbital electron populations 1.22464 0.95629 1.02853 1.02896 1.21583 0.93281 0.93352 0.85303 1.21731 1.02152 0.93048 1.02350 1.22474 1.02526 1.01246 0.97702 1.88070 1.74239 1.22198 1.42943 1.21871 1.00032 0.84230 0.95660 1.23167 0.78581 0.82573 0.86652 1.90585 1.35840 1.62371 1.50806 1.87111 1.69948 1.24344 1.45655 1.19572 0.88585 0.95529 0.75972 0.90279 1.20810 0.99452 0.87113 1.46547 0.89140 1.25127 0.98639 0.95546 0.92423 1.69859 1.24249 1.13453 1.41350 0.86916 0.81897 0.81914 0.79837 1.18889 1.20103 1.18150 1.23278 0.80695 1.00018 0.98022 1.21378 0.99468 1.10458 0.93369 1.21668 0.92498 1.08268 1.00449 1.23829 0.99014 1.07662 0.83419 1.84066 1.20715 1.68787 1.32829 0.91532 0.91407 0.91881 0.91682 0.91128 0.91698 0.91837 0.91388 0.91490 0.89376 0.89404 0.91335 0.83990 0.84173 0.78969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.25 37.16 0.31 -1.52 16 2 C 0.10 1.24 1.14 -90.62 -0.10 1.14 16 3 C -0.14 -1.39 8.84 37.15 0.33 -1.06 16 4 C -0.18 -1.89 8.25 37.16 0.31 -1.59 16 5 O -0.36 -5.95 9.52 -55.19 -0.53 -6.48 16 6 C 0.06 1.01 5.73 36.01 0.21 1.21 16 7 C 0.45 10.02 7.93 36.01 0.29 10.30 16 8 O -0.51 -12.69 15.72 -25.48 -0.40 -13.09 16 9 O -0.35 -8.60 9.84 -41.79 -0.41 -9.01 16 10 C 0.25 6.52 1.96 -29.03 -0.06 6.47 16 11 H 0.08 2.07 4.56 -51.93 -0.24 1.84 16 12 C -0.50 -14.11 9.23 -34.44 -0.32 -14.43 16 13 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 14 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 15 N -0.85 -24.36 13.96 55.43 0.77 -23.59 16 16 Si 0.87 21.03 26.90 -169.99 -4.57 16.46 16 17 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.26 -6.39 6.91 56.52 0.39 -6.00 16 20 C 0.03 0.74 6.17 -35.62 -0.22 0.52 16 21 C -0.23 -4.89 10.81 -39.70 -0.43 -5.32 16 22 C -0.21 -3.79 10.91 -39.70 -0.43 -4.23 16 23 C -0.07 -1.27 12.09 29.42 0.36 -0.92 16 24 O -0.17 -3.74 10.64 2.90 0.03 -3.71 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.66 6.54 -51.93 -0.34 0.32 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.32 6.42 -51.93 -0.33 0.98 16 35 H 0.09 1.27 6.42 -51.93 -0.33 0.93 16 36 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 38 H 0.14 2.03 8.06 -52.48 -0.42 1.61 16 39 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -32.72 332.49 -5.34 -38.06 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.38 Total: 3.32 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 0.13 Total: -6.97 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.77 Total: -23.59 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.31 Total: -32.29 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.57 Total: 16.46 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.72 -5.34 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.727 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds