Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47300 * 2 1 4 4 C 1.53004 * 109.47113 * 239.99724 * 2 1 3 5 5 O 1.42906 * 109.46730 * 120.00074 * 2 1 3 6 6 C 1.42900 * 113.99899 * 60.00265 * 5 2 1 7 7 C 1.50700 * 109.47111 * 179.97438 * 6 5 2 8 8 O 1.20826 * 119.99743 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00131 * 179.97438 * 7 6 5 10 10 C 1.45208 * 117.00138 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46650 * 330.00212 * 10 9 7 12 12 C 1.50702 * 109.47081 * 210.00055 * 10 9 7 13 13 H 1.07999 * 119.99782 * 273.48211 * 12 10 9 14 14 C 1.37874 * 119.99714 * 93.48607 * 12 10 9 15 15 N 1.31515 * 119.99641 * 181.27470 * 14 12 10 16 16 Si 1.86800 * 120.00343 * 1.26946 * 14 12 10 17 17 H 1.48497 * 109.46688 * 84.88845 * 16 14 12 18 18 H 1.48501 * 109.46893 * 204.88578 * 16 14 12 19 19 H 1.48497 * 109.47144 * 324.88790 * 16 14 12 20 20 C 1.50700 * 109.46782 * 89.99787 * 10 9 7 21 21 C 1.34518 * 125.78489 * 216.36005 * 20 10 9 22 22 C 1.41384 * 106.83532 * 179.89421 * 21 20 10 23 23 C 1.34513 * 106.84552 * 0.37499 * 22 21 20 24 24 O 1.34297 * 125.79063 * 36.67890 * 20 10 9 25 25 H 1.08998 * 109.47335 * 300.00147 * 1 2 3 26 26 H 1.09001 * 109.46698 * 59.99635 * 1 2 3 27 27 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47279 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47543 * 299.99848 * 3 2 1 30 30 H 1.09002 * 109.47197 * 60.00420 * 3 2 1 31 31 H 1.08996 * 109.47312 * 300.00248 * 4 2 1 32 32 H 1.09001 * 109.46754 * 60.00161 * 4 2 1 33 33 H 1.09001 * 109.46721 * 180.02562 * 4 2 1 34 34 H 1.08992 * 109.47418 * 59.99879 * 6 5 2 35 35 H 1.09004 * 109.46913 * 299.99720 * 6 5 2 36 36 H 0.97002 * 120.00261 * 179.97438 * 15 14 12 37 37 H 1.07998 * 126.58399 * 0.03717 * 21 20 10 38 38 H 1.08003 * 126.57479 * 180.16621 * 22 21 20 39 39 H 1.07998 * 125.79383 * 179.74871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5846 -2.0356 1.2645 7 6 2.1419 -2.6448 2.5251 8 8 2.8300 -1.9810 3.2639 9 8 1.8739 -3.9249 2.8273 10 6 2.4443 -4.4453 4.0570 11 1 3.3838 -3.9340 4.2665 12 6 2.6992 -5.9230 3.9065 13 1 1.9125 -6.6312 4.1209 14 6 3.9367 -6.3707 3.4951 15 7 4.1516 -7.6588 3.3397 16 14 5.3079 -5.1477 3.1585 17 1 6.0036 -4.8220 4.4294 18 1 6.2765 -5.7410 2.2020 19 1 4.7337 -3.9079 2.5767 20 6 1.4824 -4.2146 5.1939 21 6 1.8193 -3.9016 6.4580 22 6 0.6127 -3.7755 7.1841 23 6 -0.3890 -4.0272 6.3223 24 8 0.1438 -4.2926 5.1183 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.9491 -2.5916 0.4008 35 1 0.4957 -2.0778 1.2907 36 1 5.0220 -7.9738 3.0499 37 1 2.8193 -3.7694 6.8437 38 1 0.5143 -3.5282 8.2308 39 1 -1.4428 -4.0178 6.5585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123463409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -141.234241 kcal Electronic energy + Delta-G solvation = -22730.880434 eV Core-core repulsion = 19218.963002 eV Total energy + Delta-G solvation = -3511.917432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.43438 -41.40387 -39.91437 -37.53692 -35.23298 -34.49100 -33.92156 -32.44158 -29.79967 -28.86089 -28.31437 -27.95609 -24.84795 -22.76830 -22.31013 -21.17480 -20.95753 -19.61741 -18.84976 -18.44191 -17.69067 -17.35081 -17.21209 -16.81015 -16.47763 -16.01810 -15.47369 -15.16225 -14.78348 -14.52675 -14.26655 -14.05485 -13.70226 -13.69003 -13.45278 -13.23528 -13.14147 -12.97356 -12.88331 -12.79629 -12.67569 -12.27509 -12.09077 -11.90587 -11.73016 -11.60652 -11.30916 -11.08185 -10.80037 -10.67842 -9.35771 -8.65031 -6.80449 0.81795 1.14860 1.17930 1.22041 1.33658 1.49227 1.78069 2.07758 2.19872 2.70761 3.06926 3.66507 3.86218 3.90481 3.98852 4.04586 4.07381 4.13632 4.14641 4.21644 4.36325 4.64979 4.65744 4.80085 4.80241 4.90427 4.91947 4.92896 4.97925 5.03583 5.14631 5.19486 5.33201 5.34886 5.56578 5.68257 5.95727 6.11036 6.28461 6.33570 6.85402 6.89655 8.48402 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.006117 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.557951 B = 4576.617170 C = 5897.222735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.386 6.386 6 C 0.071 3.929 7 C 0.440 3.560 8 O -0.539 6.539 9 O -0.363 6.363 10 C 0.262 3.738 11 H 0.068 0.932 12 C -0.521 4.521 13 H 0.052 0.948 14 C 0.054 3.946 15 N -0.894 5.894 16 Si 0.926 3.074 17 H -0.254 1.254 18 H -0.256 1.256 19 H -0.271 1.271 20 C -0.019 4.019 21 C -0.231 4.231 22 C -0.214 4.214 23 C -0.056 4.056 24 O -0.190 6.190 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.284 0.716 37 H 0.147 0.853 38 H 0.181 0.819 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 14.575 -6.019 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.053 3.947 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.306 6.306 6 C -0.006 4.006 7 C 0.284 3.716 8 O -0.430 6.430 9 O -0.280 6.280 10 C 0.210 3.790 11 H 0.086 0.914 12 C -0.557 4.557 13 H 0.070 0.930 14 C -0.152 4.152 15 N -0.529 5.529 16 Si 0.748 3.252 17 H -0.178 1.178 18 H -0.180 1.180 19 H -0.196 1.196 20 C -0.070 4.070 21 C -0.250 4.250 22 C -0.233 4.233 23 C -0.122 4.122 24 O -0.087 6.087 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.094 0.906 37 H 0.165 0.835 38 H 0.199 0.801 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.369 14.589 -5.944 17.392 hybrid contribution 0.840 -0.149 0.209 0.879 sum -6.528 14.440 -5.735 16.853 Atomic orbital electron populations 1.22455 0.93991 1.03215 1.03916 1.22003 0.94717 0.93726 0.84253 1.21790 1.01569 0.92290 1.03541 1.22479 1.01887 1.01426 0.98028 1.88037 1.75177 1.21829 1.45592 1.21843 1.01088 0.84795 0.92843 1.24211 0.77861 0.81467 0.88049 1.90554 1.37406 1.62713 1.52291 1.86985 1.69869 1.26034 1.45139 1.19184 0.89284 0.93769 0.76772 0.91429 1.20780 0.98974 0.88195 1.47707 0.92961 1.25755 1.00434 0.96989 0.92019 1.69926 1.25348 1.14851 1.42811 0.86062 0.79591 0.79183 0.80398 1.17811 1.17956 1.19601 1.23020 0.81578 1.04062 0.98315 1.21769 1.01218 1.08928 0.93114 1.22102 0.90757 1.08119 1.02328 1.24968 1.01319 1.04396 0.81556 1.84023 1.20020 1.69416 1.35208 0.92268 0.88668 0.91834 0.92695 0.87953 0.92457 0.91890 0.88582 0.92567 0.87309 0.86731 0.90584 0.83542 0.80145 0.73700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.25 71.98 0.59 -2.50 16 2 C 0.09 1.99 1.14 -10.79 -0.01 1.98 16 3 C -0.13 -2.50 8.84 71.98 0.64 -1.87 16 4 C -0.18 -3.31 8.25 71.98 0.59 -2.72 16 5 O -0.39 -12.59 9.52 -129.90 -1.24 -13.82 16 6 C 0.07 2.34 5.73 71.24 0.41 2.75 16 7 C 0.44 19.87 7.93 71.24 0.56 20.44 16 8 O -0.54 -27.49 15.72 28.40 0.45 -27.05 16 9 O -0.36 -18.15 9.84 -48.90 -0.48 -18.63 16 10 C 0.26 13.90 1.96 29.10 0.06 13.96 16 11 H 0.07 3.68 4.56 -2.39 -0.01 3.67 16 12 C -0.52 -30.60 9.23 25.60 0.24 -30.36 16 13 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 14 C 0.05 3.08 5.47 84.65 0.46 3.54 16 15 N -0.89 -52.46 13.96 21.45 0.30 -52.17 16 16 Si 0.93 44.33 26.90 68.60 1.85 46.18 16 17 H -0.25 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.27 -13.50 6.91 99.48 0.69 -12.81 16 20 C -0.02 -0.93 6.17 24.83 0.15 -0.78 16 21 C -0.23 -9.90 10.81 22.19 0.24 -9.66 16 22 C -0.21 -7.23 10.91 22.19 0.24 -6.99 16 23 C -0.06 -1.84 12.09 66.97 0.81 -1.03 16 24 O -0.19 -8.42 10.64 0.19 0.00 -8.42 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.09 6.54 -2.39 -0.02 1.07 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.15 6.54 -2.39 -0.02 1.13 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.11 3.10 6.42 -2.39 -0.02 3.09 16 35 H 0.12 3.11 6.42 -2.38 -0.02 3.10 16 36 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.15 5.94 8.06 -2.91 -0.02 5.91 16 38 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.25 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -75.19 332.49 6.89 -68.30 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.03 Total: 18.86 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.99 Total: -13.25 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.30 Total: -52.17 kcal Atomic # 8 Polarization: -66.65 SS G_CDS: -1.27 Total: -67.92 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.85 Total: 46.18 kcal Total: -75.19 6.89 -68.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.934 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds