Wall clock time and date at job start Tue Mar 31 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47411 * 2 1 4 4 C 1.52998 * 109.47238 * 239.99714 * 2 1 3 5 5 O 1.42903 * 109.47190 * 119.99707 * 2 1 3 6 6 C 1.42899 * 113.99902 * 59.99851 * 5 2 1 7 7 C 1.50696 * 109.47473 * 180.02562 * 6 5 2 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00432 * 180.27701 * 7 6 5 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08993 * 109.47491 * 330.00073 * 10 9 7 12 12 C 1.50706 * 109.46887 * 90.00045 * 10 9 7 13 13 H 1.08001 * 119.99914 * 239.99856 * 12 10 9 14 14 C 1.37878 * 119.99966 * 60.00384 * 12 10 9 15 15 N 1.31515 * 119.99763 * 179.97438 * 14 12 10 16 16 Si 1.86801 * 120.00110 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.47161 * 90.00506 * 16 14 12 18 18 H 1.48502 * 109.47174 * 210.00360 * 16 14 12 19 19 H 1.48499 * 109.47270 * 330.00657 * 16 14 12 20 20 C 1.50704 * 109.46907 * 209.99697 * 10 9 7 21 21 C 1.34516 * 125.78433 * 145.00355 * 20 10 9 22 22 C 1.41385 * 106.84086 * 179.97438 * 21 20 10 23 23 C 1.34521 * 106.83744 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.79250 * 324.69650 * 20 10 9 25 25 H 1.09005 * 109.47409 * 300.00408 * 1 2 3 26 26 H 1.09003 * 109.47099 * 59.99982 * 1 2 3 27 27 H 1.08994 * 109.47505 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47203 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47004 * 300.00076 * 3 2 1 30 30 H 1.08997 * 109.47325 * 59.99721 * 3 2 1 31 31 H 1.09001 * 109.47351 * 300.00351 * 4 2 1 32 32 H 1.08994 * 109.46948 * 59.99926 * 4 2 1 33 33 H 1.08995 * 109.47384 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47391 * 60.00043 * 6 5 2 35 35 H 1.09006 * 109.47136 * 299.99928 * 6 5 2 36 36 H 0.97002 * 119.99321 * 179.97438 * 15 14 12 37 37 H 1.07996 * 126.58313 * 0.03006 * 21 20 10 38 38 H 1.07992 * 126.58013 * 179.97438 * 22 21 20 39 39 H 1.07996 * 125.78786 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0354 1.2646 7 6 2.1409 -2.6443 2.5259 8 8 2.8285 -1.9802 3.2650 9 8 1.8778 -3.9260 2.8252 10 6 2.4516 -4.4475 4.0528 11 1 3.3897 -3.9336 4.2624 12 6 1.4904 -4.2230 5.1916 13 1 1.7889 -3.6255 6.0403 14 6 0.2301 -4.7805 5.1500 15 7 -0.6085 -4.5850 6.1441 16 14 -0.2864 -5.8135 3.6818 17 1 0.0635 -7.2353 3.9292 18 1 -1.7529 -5.6921 3.4824 19 1 0.4198 -5.3343 2.4665 20 6 2.7113 -5.9239 3.8982 21 6 3.7414 -6.6019 4.4356 22 6 3.5953 -7.9511 4.0390 23 6 2.4849 -8.0167 3.2825 24 8 1.9505 -6.7870 3.2055 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1391 33 1 3.1299 -0.7217 -1.2490 34 1 1.9491 -2.5916 0.4009 35 1 0.4957 -2.0776 1.2909 36 1 -1.4953 -4.9769 6.1146 37 1 4.5285 -6.1941 5.0525 38 1 4.2499 -8.7713 4.2938 39 1 2.0876 -8.9081 2.8200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123463410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:40 Heat of formation + Delta-G solvation = -126.283317 kcal Electronic energy + Delta-G solvation = -22944.485681 eV Core-core repulsion = 19433.216570 eV Total energy + Delta-G solvation = -3511.269111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.54820 -41.34752 -39.88807 -37.54139 -35.10682 -34.45739 -33.96316 -32.44361 -29.76707 -28.64058 -28.29557 -27.91680 -24.91374 -22.96693 -22.07801 -21.47048 -20.92983 -19.55726 -18.83611 -18.43118 -17.70937 -17.35040 -17.23755 -16.93827 -16.36829 -15.79001 -15.63139 -15.09737 -14.75403 -14.63617 -14.28506 -13.97742 -13.78143 -13.46175 -13.41764 -13.17869 -13.11219 -12.85671 -12.78529 -12.68987 -12.65610 -12.24456 -12.14487 -11.79127 -11.50257 -11.25434 -11.09845 -10.91902 -10.64547 -10.54384 -9.31819 -8.55428 -6.75674 0.78089 1.19401 1.32240 1.37922 1.47520 1.69270 1.82787 2.30938 2.44725 2.81143 3.02279 3.64265 3.88645 3.93075 4.03385 4.09284 4.17153 4.18263 4.20187 4.30592 4.47954 4.66535 4.67757 4.82059 4.82237 4.92567 4.93927 4.94719 5.04083 5.09849 5.16408 5.25763 5.35152 5.37173 5.58786 5.72102 5.96715 6.14776 6.26766 6.34667 6.89226 7.04155 8.56090 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.005293 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.394524 B = 5289.003134 C = 5686.723120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.092 3.908 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.386 6.386 6 C 0.073 3.927 7 C 0.449 3.551 8 O -0.536 6.536 9 O -0.358 6.358 10 C 0.261 3.739 11 H 0.081 0.919 12 C -0.553 4.553 13 H 0.043 0.957 14 C 0.039 3.961 15 N -0.915 5.915 16 Si 0.951 3.049 17 H -0.262 1.262 18 H -0.297 1.297 19 H -0.207 1.207 20 C -0.010 4.010 21 C -0.221 4.221 22 C -0.204 4.204 23 C -0.070 4.070 24 O -0.185 6.185 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.276 0.724 37 H 0.154 0.846 38 H 0.182 0.818 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 0.523 -17.779 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.054 3.946 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.306 6.306 6 C -0.004 4.004 7 C 0.294 3.706 8 O -0.426 6.426 9 O -0.276 6.276 10 C 0.208 3.792 11 H 0.099 0.901 12 C -0.589 4.589 13 H 0.061 0.939 14 C -0.164 4.164 15 N -0.551 5.551 16 Si 0.780 3.220 17 H -0.189 1.189 18 H -0.226 1.226 19 H -0.132 1.132 20 C -0.060 4.060 21 C -0.240 4.240 22 C -0.222 4.222 23 C -0.135 4.135 24 O -0.084 6.084 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.172 0.828 38 H 0.199 0.801 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.125 0.852 -17.448 17.746 hybrid contribution -0.360 -0.371 0.606 0.796 sum 2.765 0.481 -16.842 17.074 Atomic orbital electron populations 1.22487 0.94595 1.03129 1.03710 1.21987 0.94297 0.93830 0.84528 1.21794 1.01754 0.92358 1.03351 1.22447 1.02103 1.01364 0.97564 1.88044 1.74882 1.22006 1.45679 1.21822 1.00715 0.84908 0.92942 1.23936 0.77694 0.81425 0.87592 1.90571 1.37751 1.62561 1.51717 1.86868 1.69058 1.26965 1.44685 1.18854 0.96172 0.83491 0.80648 0.90084 1.21178 0.99350 1.34209 1.04192 0.93877 1.26043 0.95647 0.95657 0.99092 1.70041 1.07827 1.43795 1.33428 0.85600 0.75643 0.79201 0.81592 1.18932 1.22637 1.13174 1.22613 0.92633 0.91969 0.98745 1.21669 1.00869 0.94939 1.06535 1.22071 1.00591 0.97019 1.02555 1.24837 0.96416 0.87491 1.04769 1.84359 1.45617 1.18797 1.59633 0.92840 0.88581 0.91910 0.92289 0.87994 0.92898 0.91699 0.88755 0.92043 0.86272 0.87850 0.91549 0.82793 0.80102 0.74819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 8.25 71.98 0.59 -2.94 16 2 C 0.09 2.04 1.14 -10.79 -0.01 2.03 16 3 C -0.14 -2.61 8.84 71.98 0.64 -1.98 16 4 C -0.18 -3.01 8.25 71.98 0.59 -2.41 16 5 O -0.39 -12.74 9.52 -129.90 -1.24 -13.98 16 6 C 0.07 2.38 5.73 71.23 0.41 2.79 16 7 C 0.45 20.15 8.00 71.23 0.57 20.72 16 8 O -0.54 -27.94 15.72 28.37 0.45 -27.49 16 9 O -0.36 -17.06 6.69 -48.71 -0.33 -17.38 16 10 C 0.26 13.39 2.55 29.10 0.07 13.47 16 11 H 0.08 4.18 7.15 -2.39 -0.02 4.16 16 12 C -0.55 -33.46 9.51 25.60 0.24 -33.22 16 13 H 0.04 2.91 8.06 -2.91 -0.02 2.88 16 14 C 0.04 2.33 5.45 84.65 0.46 2.79 16 15 N -0.91 -57.43 13.96 21.45 0.30 -57.13 16 16 Si 0.95 46.13 22.92 68.60 1.57 47.71 16 17 H -0.26 -12.09 6.01 99.48 0.60 -11.49 16 18 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.21 -9.44 4.92 99.48 0.49 -8.95 16 20 C -0.01 -0.46 5.34 24.83 0.13 -0.32 16 21 C -0.22 -8.63 10.81 22.19 0.24 -8.39 16 22 C -0.20 -6.42 10.91 22.19 0.24 -6.18 16 23 C -0.07 -2.26 11.72 66.97 0.79 -1.47 16 24 O -0.19 -7.84 4.85 0.89 0.00 -7.84 16 25 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.20 6.54 -2.39 -0.02 1.19 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.06 6.54 -2.39 -0.02 1.04 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.12 3.04 6.42 -2.39 -0.02 3.03 16 35 H 0.10 3.04 6.42 -2.38 -0.02 3.03 16 36 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 37 H 0.15 5.49 8.06 -2.91 -0.02 5.47 16 38 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.24 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -78.19 318.80 6.44 -71.75 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.71 Total: 19.48 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.97 Total: -15.12 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.30 Total: -57.13 kcal Atomic # 8 Polarization: -65.58 SS G_CDS: -1.11 Total: -66.69 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.57 Total: 47.71 kcal Total: -78.19 6.44 -71.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.537 kcal (2) G-P(sol) polarization free energy of solvation -78.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds