Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 117.00083 * 2 1 4 4 C 1.39095 * 119.88658 * 0.02562 * 3 2 1 5 5 C 1.37611 * 120.15660 * 179.76731 * 4 3 2 6 6 C 1.39806 * 119.93659 * 0.46548 * 5 4 3 7 7 C 1.47452 * 120.11480 * 179.78974 * 6 5 4 8 8 O 1.21603 * 120.00270 * 179.72473 * 7 6 5 9 9 N 1.34777 * 119.99473 * 359.72163 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.36936 * 119.99757 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00476 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00323 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 90.00121 * 17 15 13 19 19 H 1.48506 * 109.46994 * 210.00426 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99871 * 17 15 13 21 21 C 1.39990 * 119.77984 * 359.51485 * 6 5 4 22 22 F 1.35102 * 120.08629 * 180.27262 * 21 6 5 23 23 C 1.38062 * 119.83594 * 0.25414 * 21 6 5 24 24 H 1.09005 * 109.47451 * 300.00440 * 1 2 3 25 25 H 1.09004 * 109.47402 * 59.99851 * 1 2 3 26 26 H 1.08997 * 109.47641 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.92497 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.02982 * 180.23381 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 30 30 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 32 32 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 33 33 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 34 34 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 35 35 H 0.96996 * 120.00458 * 179.97438 * 16 15 13 36 36 H 1.07998 * 119.96622 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3742 0.0005 5 6 1.9042 3.6033 0.0054 6 6 3.3001 3.6815 -0.0001 7 6 3.9674 4.9964 0.0004 8 8 5.1816 5.0620 0.0007 9 7 3.2314 6.1255 0.0004 10 6 3.8944 7.4319 0.0070 11 6 2.8388 8.5394 0.0126 12 7 3.5017 9.8458 0.0198 13 6 2.7540 10.9930 0.0252 14 1 1.6756 10.9347 0.0245 15 6 3.3821 12.2309 0.0325 16 7 4.6964 12.3020 0.0348 17 14 2.3621 13.7958 0.0406 18 1 2.0909 14.2027 1.4428 19 1 3.1081 14.8765 -0.6530 20 1 1.0765 13.5523 -0.6617 21 6 4.0623 2.5073 -0.0002 22 9 5.4116 2.5757 0.0001 23 6 3.4317 1.2791 -0.0002 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2069 2.3142 0.0014 28 1 1.3122 4.5066 0.0096 29 1 2.2628 6.0731 0.0005 30 1 4.5170 7.5189 0.8975 31 1 4.5170 7.5279 -0.8825 32 1 2.2162 8.4524 -0.8778 33 1 2.2161 8.4435 0.9022 34 1 4.4703 9.8983 0.0207 35 1 5.1353 13.1669 0.0396 36 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130920224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = -76.320268 kcal Electronic energy + Delta-G solvation = -20853.465075 eV Core-core repulsion = 17253.194971 eV Total energy + Delta-G solvation = -3600.270104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.04615 -40.69456 -39.52540 -37.33031 -35.68701 -33.89880 -31.85225 -31.08543 -30.46413 -28.20699 -27.37166 -24.22543 -23.56289 -22.64316 -21.47708 -20.58414 -19.00405 -17.82910 -17.43082 -17.02442 -16.42711 -16.33256 -15.76617 -15.53838 -15.14116 -15.13939 -14.82865 -14.51753 -13.82707 -13.73459 -13.29547 -13.18782 -12.97154 -12.81845 -12.80483 -12.60359 -11.57161 -11.53291 -11.33432 -11.10989 -10.83351 -10.81317 -10.13722 -9.93846 -9.72931 -9.34227 -9.03318 -8.90106 -8.67731 -7.00329 -5.80049 -3.11016 0.45124 0.73225 2.57360 2.64954 3.16480 3.41861 3.46609 3.47395 3.48772 3.95635 4.17094 4.41065 4.53060 4.58135 4.60771 4.63934 4.79432 4.89361 4.99202 5.36314 5.49528 5.52105 5.56839 5.67640 5.73723 5.77596 5.95079 6.13990 6.18059 6.45715 6.69006 6.71853 6.75220 7.55867 7.64923 8.27186 8.37464 9.48660 10.03423 10.38118 11.42509 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.031334 B = 0.002780 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.395980 B =10069.636733 C =10937.262249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.180 3.820 4 C -0.228 4.228 5 C -0.015 4.015 6 C -0.207 4.207 7 C 0.556 3.444 8 O -0.527 6.527 9 N -0.718 5.718 10 C 0.111 3.889 11 C 0.145 3.855 12 N -0.729 5.729 13 C -0.245 4.245 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.910 3.090 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.201 3.799 22 F -0.107 7.107 23 C -0.203 4.203 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.397 0.603 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -26.385 -0.101 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.134 3.866 4 C -0.247 4.247 5 C -0.034 4.034 6 C -0.211 4.211 7 C 0.343 3.657 8 O -0.405 6.405 9 N -0.370 5.370 10 C -0.012 4.012 11 C 0.017 3.983 12 N -0.375 5.375 13 C -0.376 4.376 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.181 3.819 22 F -0.085 7.085 23 C -0.223 4.223 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.232 0.768 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.697 -26.374 -0.110 28.100 hybrid contribution -0.748 1.036 0.019 1.278 sum -10.445 -25.338 -0.091 27.407 Atomic orbital electron populations 1.23195 0.77404 1.04549 1.01969 1.86053 1.22167 1.26416 1.87558 1.18817 0.91350 0.84553 0.91928 1.21222 1.00825 0.91673 1.10954 1.21013 0.92249 0.98092 0.92049 1.20028 0.94162 0.93220 1.13686 1.17832 0.86996 0.83546 0.77360 1.90861 1.13122 1.87249 1.49234 1.45792 1.10100 1.06011 1.75061 1.21618 0.96351 0.80410 1.02842 1.20754 0.93510 0.85672 0.98396 1.42189 1.06327 0.99253 1.89692 1.19182 0.90573 0.84289 1.43524 0.91032 1.24789 0.95682 0.97724 1.02646 1.69664 1.06926 1.24117 1.57101 0.86147 0.78972 0.83219 0.77548 1.21620 1.21676 1.20710 1.17229 0.77584 0.92095 0.95034 1.91631 1.27535 1.96966 1.92326 1.20198 0.92519 0.97622 1.11934 0.92030 0.92036 0.87770 0.84063 0.84029 0.76799 0.91048 0.91037 0.95779 0.95799 0.77952 0.93327 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.31 10.48 -18.84 -0.20 -2.51 16 3 C 0.18 1.53 6.69 -39.04 -0.26 1.27 16 4 C -0.23 -1.65 9.01 -39.49 -0.36 -2.00 16 5 C -0.02 -0.13 9.53 -39.22 -0.37 -0.50 16 6 C -0.21 -2.53 5.88 -104.90 -0.62 -3.15 16 7 C 0.56 8.67 7.76 -12.51 -0.10 8.57 16 8 O -0.53 -10.47 15.33 5.27 0.08 -10.39 16 9 N -0.72 -10.08 5.51 -61.37 -0.34 -10.42 16 10 C 0.11 1.94 5.79 -4.04 -0.02 1.91 16 11 C 0.14 2.82 6.37 -4.04 -0.03 2.79 16 12 N -0.73 -18.57 5.60 -59.91 -0.34 -18.90 16 13 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 17 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C 0.20 2.51 7.28 -38.99 -0.28 2.23 16 22 F -0.11 -1.60 15.54 2.25 0.03 -1.56 16 23 C -0.20 -2.00 9.95 -39.43 -0.39 -2.39 16 24 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 25 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 26 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.14 0.61 6.27 -52.49 -0.33 0.28 16 28 H 0.14 0.85 6.39 -52.48 -0.34 0.52 16 29 H 0.40 4.20 6.49 -40.82 -0.27 3.93 16 30 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.39 10.45 7.67 -40.82 -0.31 10.13 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -34.95 316.98 -6.08 -41.03 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.12 Total: 5.96 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.69 Total: 2.39 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.05 Total: -56.93 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.12 Total: -12.90 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.03 Total: -1.56 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.95 -6.08 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130920224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.287 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds