Wall clock time and date at job start Tue Mar 31 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.46956 * 2 1 4 4 C 1.52998 * 109.47446 * 239.99762 * 2 1 3 5 5 C 1.52998 * 109.47368 * 174.99860 * 4 2 1 6 6 H 1.09001 * 109.47035 * 54.99779 * 5 4 2 7 7 C 1.53000 * 109.47175 * 175.00221 * 5 4 2 8 8 N 1.46506 * 109.47201 * 295.00294 * 5 4 2 9 9 C 1.34773 * 119.99969 * 155.00267 * 8 5 4 10 10 O 1.21705 * 120.00134 * 359.71672 * 9 8 5 11 11 C 1.46586 * 119.99926 * 179.97438 * 9 8 5 12 12 C 1.36640 * 125.45776 * 179.72236 * 11 9 8 13 13 C 1.37474 * 113.29717 * 179.97438 * 12 11 9 14 14 C 1.33814 * 115.10090 * 0.02562 * 13 12 11 15 15 S 1.70619 * 110.95358 * 359.75975 * 14 13 12 16 16 N 1.46504 * 109.47018 * 119.99527 * 2 1 3 17 17 C 1.36935 * 120.00045 * 274.99779 * 16 2 1 18 18 H 1.07997 * 120.00056 * 0.02562 * 17 16 2 19 19 C 1.38813 * 119.99737 * 180.02562 * 17 16 2 20 20 N 1.31617 * 120.00341 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47246 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47067 * 120.00146 * 21 19 17 24 24 H 1.48507 * 109.47175 * 239.99779 * 21 19 17 25 25 H 1.09000 * 109.47091 * 300.00318 * 1 2 3 26 26 H 1.08998 * 109.47019 * 59.99974 * 1 2 3 27 27 H 1.08997 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46946 * 55.00024 * 4 2 1 29 29 H 1.08997 * 109.47163 * 295.00137 * 4 2 1 30 30 H 1.08995 * 109.47077 * 59.99710 * 7 5 4 31 31 H 1.09001 * 109.46907 * 180.02562 * 7 5 4 32 32 H 1.09002 * 109.46979 * 300.00080 * 7 5 4 33 33 H 0.96998 * 119.99501 * 334.99498 * 8 5 4 34 34 H 1.08004 * 123.35677 * 359.94041 * 12 11 9 35 35 H 1.07996 * 122.45118 * 180.02562 * 13 12 11 36 36 H 1.08002 * 124.52413 * 180.02562 * 14 13 12 37 37 H 0.96999 * 119.99467 * 95.00639 * 16 2 1 38 38 H 0.96993 * 120.00408 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.9954 -0.9921 -0.3867 7 6 4.0852 -1.4383 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1612 1.2136 -1.0867 10 8 5.9365 0.4325 -0.5672 11 6 5.5447 2.6170 -1.2661 12 6 6.7388 3.1663 -0.8928 13 6 6.8339 4.5073 -1.1801 14 6 5.7561 5.0397 -1.7678 15 16 4.5442 3.8617 -2.0018 16 7 2.0183 -0.6905 1.1963 17 6 2.1491 -0.0073 2.3758 18 1 1.8919 1.0405 2.4243 19 6 2.6123 -0.6615 3.5091 20 7 2.9262 -1.9383 3.4498 21 14 2.7900 0.2703 5.1183 22 1 2.3741 1.6821 4.9213 23 1 1.9298 -0.3590 6.1523 24 1 4.2071 0.2283 5.5607 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2618 -2.1370 29 1 1.7517 -1.7715 -1.2055 30 1 3.6546 -1.0594 -3.4192 31 1 5.1715 -1.3617 -2.5380 32 1 3.8001 -2.4819 -2.3594 33 1 3.3284 1.4128 -1.9028 34 1 7.5291 2.6032 -0.4186 35 1 7.7141 5.0886 -0.9485 36 1 5.6669 6.0758 -2.0593 37 1 2.2490 -1.6317 1.1527 38 1 3.2495 -2.3956 4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133581978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:54 Heat of formation + Delta-G solvation = -2.273839 kcal Electronic energy + Delta-G solvation = -20137.950957 eV Core-core repulsion = 17107.104922 eV Total energy + Delta-G solvation = -3030.846034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.61565 -37.69665 -36.59745 -34.41463 -32.17446 -31.06969 -29.33910 -28.54895 -26.30944 -25.01462 -23.57600 -22.04815 -20.56158 -19.74148 -19.19837 -18.51512 -17.13021 -16.08954 -15.75466 -15.13698 -14.87917 -14.47644 -13.92920 -13.66783 -13.56167 -13.12802 -12.89190 -12.75167 -12.61162 -12.37695 -12.11205 -11.93775 -11.70738 -11.56461 -11.06375 -11.01755 -10.80407 -10.58528 -10.40175 -10.17132 -9.85219 -9.72223 -9.57857 -8.96090 -8.84091 -8.70708 -8.63104 -6.87609 -5.68740 -2.96478 0.51370 1.42415 1.81699 2.41346 3.36801 3.48462 3.51671 3.53686 3.56006 4.66309 4.84180 4.96349 5.17557 5.26194 5.42299 5.43241 5.51194 5.65560 5.71648 5.89860 5.91117 5.96525 6.03848 6.11960 6.15926 6.27142 6.31492 6.38584 6.46969 6.59737 6.72742 6.82168 6.94549 7.10508 7.75357 7.77425 8.48330 8.49920 9.61156 10.18306 10.52627 11.54160 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013627 B = 0.005817 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.200278 B = 4811.962047 C = 5678.266496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.711 5.711 9 C 0.588 3.412 10 O -0.520 6.520 11 C -0.250 4.250 12 C -0.065 4.065 13 C -0.147 4.147 14 C -0.238 4.238 15 S 0.194 5.806 16 N -0.720 5.720 17 C -0.233 4.233 18 H 0.067 0.933 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.901 3.099 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.292 1.292 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.391 0.609 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.383 0.617 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 11.125 -15.914 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.362 5.362 9 C 0.373 3.627 10 O -0.398 6.398 11 C -0.371 4.371 12 C -0.097 4.097 13 C -0.178 4.178 14 C -0.376 4.376 15 S 0.460 5.540 16 N -0.362 5.362 17 C -0.364 4.364 18 H 0.085 0.915 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.733 3.267 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.219 1.219 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.224 0.776 34 H 0.171 0.829 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.217 0.783 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.525 10.700 -16.032 19.335 hybrid contribution 1.302 0.683 1.448 2.064 sum 2.827 11.383 -14.584 18.715 Atomic orbital electron populations 1.22451 0.99470 1.00817 0.99777 1.20232 0.91622 0.95546 0.86563 0.93687 1.22180 0.93591 1.02358 0.98876 1.21087 0.95256 0.79553 1.00088 0.87385 1.22189 1.01584 1.00227 0.97949 1.45847 1.15826 1.11957 1.62544 1.16877 0.82309 0.85225 0.78249 1.90856 1.51336 1.54922 1.42651 1.24818 1.00546 0.98424 1.13280 1.20823 0.96712 0.94281 0.97923 1.20038 1.00035 0.94893 1.02867 1.25259 0.99187 1.04957 1.08169 1.82934 1.17641 0.97916 1.55463 1.42398 1.77968 1.10554 1.05262 1.19199 1.36206 0.93685 0.87312 0.91471 1.24688 1.02244 0.95946 0.97939 1.69651 1.51060 1.08628 1.28644 0.86195 0.77325 0.78796 0.84374 1.20692 1.21984 1.21917 0.92895 0.94706 0.93501 0.92026 0.90419 0.93093 0.92461 0.91560 0.77565 0.82891 0.83892 0.81609 0.78328 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.15 0.35 -2.54 16 2 C 0.17 3.27 2.84 -67.93 -0.19 3.08 16 3 H 0.05 0.89 7.56 -51.92 -0.39 0.50 16 4 C -0.13 -2.03 4.29 -26.73 -0.11 -2.14 16 5 C 0.14 2.39 2.52 -67.93 -0.17 2.22 16 6 H 0.11 2.34 7.05 -51.93 -0.37 1.97 16 7 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 8 N -0.71 -11.08 4.44 -55.14 -0.25 -11.33 16 9 C 0.59 10.47 7.75 -12.90 -0.10 10.37 16 10 O -0.52 -11.43 16.50 5.18 0.09 -11.35 16 11 C -0.25 -3.66 6.45 -36.79 -0.24 -3.90 16 12 C -0.06 -0.87 10.01 -40.44 -0.40 -1.27 16 13 C -0.15 -1.56 10.15 -41.41 -0.42 -1.98 16 14 C -0.24 -2.29 10.92 29.18 0.32 -1.97 16 15 S 0.19 2.07 22.16 -107.50 -2.38 -0.31 16 16 N -0.72 -17.86 4.49 -53.43 -0.24 -18.10 16 17 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 21 Si 0.90 23.22 29.55 -169.99 -5.02 18.20 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.39 5.02 7.72 -40.82 -0.31 4.70 16 34 H 0.15 2.07 8.06 -52.48 -0.42 1.64 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 38 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -33.49 336.43 -8.46 -41.95 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.59 Total: 11.10 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.86 Total: -7.19 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.24 Total: -57.47 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.38 Total: -0.31 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.49 -8.46 -41.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133581978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.679 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds