Wall clock time and date at job start Tue Mar 31 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09001 * 109.46555 * 305.00314 * 5 4 2 7 7 C 1.53000 * 109.47280 * 185.00345 * 5 4 2 8 8 N 1.46498 * 109.47042 * 65.00151 * 5 4 2 9 9 C 1.34775 * 120.00097 * 205.00659 * 8 5 4 10 10 O 1.21702 * 119.99739 * 359.97438 * 9 8 5 11 11 C 1.46584 * 120.00192 * 180.02562 * 9 8 5 12 12 C 1.36653 * 125.45754 * 179.97438 * 11 9 8 13 13 C 1.37471 * 113.29539 * 179.97438 * 12 11 9 14 14 C 1.33815 * 115.10124 * 359.97438 * 13 12 11 15 15 S 1.70624 * 110.95499 * 359.76535 * 14 13 12 16 16 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 17 17 C 1.36931 * 119.99788 * 274.99780 * 16 2 1 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 2 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 2 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 27 27 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 28 28 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 29 29 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 30 30 H 1.08991 * 109.47284 * 59.99353 * 7 5 4 31 31 H 1.09002 * 109.46964 * 180.02562 * 7 5 4 32 32 H 1.09005 * 109.46977 * 299.99864 * 7 5 4 33 33 H 0.96996 * 120.00030 * 25.00106 * 8 5 4 34 34 H 1.07993 * 123.34838 * 359.93693 * 12 11 9 35 35 H 1.07993 * 122.44966 * 180.02562 * 13 12 11 36 36 H 1.07996 * 124.52393 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99792 * 94.99575 * 16 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2676 7 6 4.0646 -1.2253 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3747 -0.9913 0.2736 10 8 5.9884 -0.0829 -0.2549 11 6 5.9640 -1.7130 1.4052 12 6 7.1890 -1.4600 1.9555 13 6 7.4933 -2.2887 3.0093 14 6 6.5515 -3.1893 3.3136 15 16 5.2045 -3.0374 2.2773 16 7 2.0183 -0.6906 1.1963 17 6 2.1491 -0.0075 2.3757 18 1 1.8919 1.0404 2.4243 19 6 2.6062 -0.6633 3.5106 20 7 2.9191 -1.9403 3.4515 21 14 2.7773 0.2668 5.1216 22 1 1.5060 0.1751 5.8835 23 1 3.8779 -0.3276 5.9219 24 1 3.0840 1.6923 4.8400 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5139 -0.8901 28 1 1.7516 -1.7716 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 3.6265 -0.6890 -3.4656 31 1 5.1510 -1.1488 -2.6695 32 1 3.7723 -2.2744 -2.6698 33 1 3.6646 -2.0586 0.2388 34 1 7.8523 -0.6866 1.5976 35 1 8.4239 -2.2175 3.5525 36 1 6.6313 -3.9127 4.1114 37 1 2.2489 -1.6318 1.1527 38 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133581981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:59 Heat of formation + Delta-G solvation = 5.311671 kcal Electronic energy + Delta-G solvation = -21061.118921 eV Core-core repulsion = 18030.601819 eV Total energy + Delta-G solvation = -3030.517102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.20051 -37.13847 -36.24002 -34.18219 -32.36944 -30.84874 -28.87607 -28.39937 -26.36105 -24.23874 -23.80781 -21.59075 -20.30400 -19.94755 -18.43518 -17.72014 -17.32178 -15.80385 -15.08583 -14.81273 -14.55794 -14.30076 -13.85789 -13.66715 -13.03992 -12.87732 -12.82512 -12.21270 -12.09251 -11.94260 -11.85962 -11.82271 -11.69235 -11.39683 -11.04621 -10.90309 -10.80251 -10.39446 -10.32727 -10.03651 -9.96278 -9.73792 -9.24302 -9.09840 -8.40620 -7.97379 -7.69943 -6.88656 -5.92575 -3.12715 1.36559 2.48132 2.83688 3.17782 3.37725 3.44620 3.45873 3.84806 4.12962 4.50025 5.07781 5.37290 5.42323 5.49640 5.65502 5.67135 5.70193 5.86507 5.96379 5.98553 6.07911 6.11408 6.19859 6.21731 6.34590 6.39885 6.50958 6.57265 6.72031 6.79495 6.99311 7.01793 7.14582 7.19808 7.55493 8.20800 8.26571 8.97721 9.34856 9.87563 10.22933 11.24036 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012284 B = 0.010297 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.822001 B = 2718.557543 C = 4322.679619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.166 3.834 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.084 0.916 7 C -0.162 4.162 8 N -0.699 5.699 9 C 0.603 3.397 10 O -0.561 6.561 11 C -0.290 4.290 12 C -0.093 4.093 13 C -0.165 4.165 14 C -0.301 4.301 15 S 0.366 5.634 16 N -0.715 5.715 17 C -0.202 4.202 18 H 0.071 0.929 19 C -0.021 4.021 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.399 0.601 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.378 0.622 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -3.882 -6.789 7.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 H 0.068 0.932 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.102 0.898 7 C -0.221 4.221 8 N -0.351 5.351 9 C 0.391 3.609 10 O -0.443 6.443 11 C -0.413 4.413 12 C -0.127 4.127 13 C -0.198 4.198 14 C -0.442 4.442 15 S 0.638 5.362 16 N -0.357 5.357 17 C -0.333 4.333 18 H 0.089 0.911 19 C -0.216 4.216 20 N -0.559 5.559 21 Si 0.735 3.265 22 H -0.219 1.219 23 H -0.216 1.216 24 H -0.210 1.210 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.237 0.763 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.168 0.832 37 H 0.213 0.787 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.093 -3.885 -7.147 8.135 hybrid contribution 1.321 0.745 1.740 2.308 sum 1.414 -3.140 -5.407 6.411 Atomic orbital electron populations 1.22396 0.98989 1.00817 1.00053 1.20344 0.91813 0.95866 0.86295 0.93177 1.22220 0.94083 1.01618 0.99359 1.20803 0.92364 0.97375 0.84926 0.89806 1.22211 1.01924 1.00793 0.97168 1.45843 1.17667 1.37725 1.33897 1.16859 0.80759 0.82012 0.81246 1.90703 1.62434 1.31085 1.60042 1.24545 1.01005 1.09871 1.05900 1.20328 0.95644 1.00520 0.96251 1.19606 1.00923 0.98770 1.00481 1.25405 1.00534 1.07560 1.10696 1.83682 1.09440 1.23694 1.19419 1.42562 1.77290 1.10278 1.05559 1.19380 1.33117 0.93864 0.86946 0.91131 1.24527 1.03041 0.96143 0.97862 1.69288 1.49527 1.08518 1.28543 0.86201 0.77208 0.79089 0.83983 1.21883 1.21631 1.20953 0.93522 0.92834 0.94421 0.91711 0.90617 0.92105 0.92285 0.92808 0.76327 0.84874 0.85920 0.83219 0.78699 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 2 C 0.17 2.99 2.89 -67.93 -0.20 2.80 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -1.98 4.43 -26.73 -0.12 -2.09 16 5 C 0.15 2.46 2.57 -67.93 -0.17 2.29 16 6 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 7 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 8 N -0.70 -13.11 3.80 -55.14 -0.21 -13.32 16 9 C 0.60 12.99 7.75 -12.90 -0.10 12.89 16 10 O -0.56 -13.37 16.50 5.19 0.09 -13.29 16 11 C -0.29 -6.03 6.45 -36.79 -0.24 -6.26 16 12 C -0.09 -1.84 10.01 -40.43 -0.40 -2.24 16 13 C -0.17 -2.97 10.15 -41.41 -0.42 -3.39 16 14 C -0.30 -5.31 10.92 29.18 0.32 -5.00 16 15 S 0.37 6.87 19.23 -107.50 -2.07 4.80 16 16 N -0.71 -15.50 3.84 -53.42 -0.21 -15.71 16 17 C -0.20 -5.05 9.93 -15.06 -0.15 -5.20 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 20 N -0.91 -22.56 10.15 55.49 0.56 -21.99 16 21 Si 0.90 21.55 29.55 -169.99 -5.02 16.53 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 7.42 5.62 -40.82 -0.23 7.20 16 34 H 0.13 2.55 8.06 -52.49 -0.42 2.12 16 35 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.38 8.33 5.70 -40.82 -0.23 8.09 16 38 H 0.26 6.39 8.23 -40.82 -0.34 6.05 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -27.68 326.32 -8.28 -35.96 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.47 Total: 13.12 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.87 Total: -11.02 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.15 Total: -51.02 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -2.07 Total: 4.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.68 -8.28 -35.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133581981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.276 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds