Wall clock time and date at job start Tue Mar 31 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47217 * 2 1 4 4 C 1.52995 * 109.47173 * 120.00874 * 2 1 3 5 5 C 1.50702 * 109.47096 * 294.99791 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 C 1.50704 * 109.46978 * 240.00867 * 2 1 3 11 11 O 1.21280 * 119.99913 * 240.00183 * 10 2 1 12 12 N 1.34774 * 120.00056 * 59.99606 * 10 2 1 13 13 C 1.46504 * 119.99800 * 180.02562 * 12 10 2 14 14 C 1.53004 * 109.46783 * 180.02562 * 13 12 10 15 15 N 1.46504 * 109.46783 * 180.02562 * 14 13 12 16 16 C 1.36940 * 119.99691 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99450 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99133 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00398 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46991 * 89.99928 * 20 18 16 22 22 H 1.48493 * 109.47294 * 209.99848 * 20 18 16 23 23 H 1.48504 * 109.47087 * 330.00030 * 20 18 16 24 24 H 1.08999 * 109.46903 * 299.99633 * 1 2 3 25 25 H 1.09006 * 109.47368 * 59.98797 * 1 2 3 26 26 H 1.08996 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46856 * 174.99736 * 4 2 1 28 28 H 1.08996 * 109.47050 * 54.99879 * 4 2 1 29 29 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 30 30 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 31 31 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 32 32 H 0.97005 * 120.00126 * 0.02562 * 12 10 2 33 33 H 1.08997 * 109.47171 * 299.99941 * 13 12 10 34 34 H 1.08999 * 109.46815 * 60.00423 * 13 12 10 35 35 H 1.08997 * 109.46922 * 299.99731 * 14 13 12 36 36 H 1.08996 * 109.47318 * 59.99889 * 14 13 12 37 37 H 0.96992 * 119.99992 * 0.02562 * 15 14 13 38 38 H 0.97001 * 119.99106 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0567 2.4766 6 6 0.5067 -0.1097 3.1576 7 6 0.3578 0.7210 4.2549 8 6 1.3693 1.5656 4.4618 9 16 2.6015 1.3229 3.2305 10 6 2.0323 -0.7102 -1.2306 11 8 2.7295 -1.6964 -1.1195 12 7 1.7066 -0.2497 -2.4546 13 6 2.1945 -0.9405 -3.6509 14 6 1.6850 -0.2186 -4.9000 15 7 2.1724 -0.9098 -6.0963 16 6 1.8414 -0.4418 -7.3400 17 1 1.2207 0.4364 -7.4390 18 6 2.3028 -1.0971 -8.4735 19 7 1.9850 -0.6470 -9.6688 20 14 3.3745 -2.6174 -8.3023 21 1 2.5141 -3.8269 -8.2565 22 1 4.2943 -2.7081 -9.4646 23 1 4.1670 -2.5259 -7.0498 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1263 -0.7996 1.2053 28 1 1.6054 -1.7199 1.2948 29 1 -0.2396 -0.8371 2.8742 30 1 -0.5135 0.6907 4.8925 31 1 1.4241 2.2867 5.2640 32 1 1.1492 0.5392 -2.5435 33 1 3.2845 -0.9409 -3.6511 34 1 1.8307 -1.9680 -3.6508 35 1 0.5951 -0.2179 -4.9000 36 1 2.0491 0.8088 -4.8999 37 1 2.7289 -1.6992 -6.0074 38 1 2.3071 -1.1051 -10.4609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134554813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:52 Heat of formation + Delta-G solvation = -2.626355 kcal Electronic energy + Delta-G solvation = -18884.275532 eV Core-core repulsion = 15853.414212 eV Total energy + Delta-G solvation = -3030.861320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04281 -38.27318 -35.97785 -34.92793 -33.96373 -31.49566 -30.30675 -28.09443 -27.05643 -24.49453 -23.46578 -22.26105 -21.50561 -19.90325 -19.56034 -17.85417 -17.54731 -16.70863 -15.94300 -15.86090 -15.53609 -14.68040 -14.56442 -13.99922 -13.84372 -13.63136 -13.52603 -13.05283 -12.94957 -12.70378 -12.63404 -12.24879 -12.16646 -11.60146 -11.53400 -11.49013 -11.30534 -10.97190 -10.95299 -10.86515 -10.17860 -9.80137 -9.63636 -9.05690 -8.93806 -8.90566 -8.77840 -7.32333 -5.81775 -3.19244 0.68137 1.32793 1.70854 2.42485 2.62455 3.16773 3.37125 3.40788 3.44878 4.36859 4.50730 4.56019 4.66240 4.74738 4.82949 5.09518 5.16265 5.24505 5.32409 5.40772 5.42565 5.46868 5.55750 5.60380 5.63979 5.80078 5.84139 5.89563 5.94779 5.99543 6.19325 6.36730 6.56565 6.60230 7.51219 7.91632 8.21691 8.36345 9.13935 9.86256 10.04547 11.36044 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046862 B = 0.002544 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.353217 B =11005.192202 C =11154.574250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.032 4.032 5 C -0.165 4.165 6 C -0.141 4.141 7 C -0.133 4.133 8 C -0.219 4.219 9 S 0.096 5.904 10 C 0.516 3.484 11 O -0.543 6.543 12 N -0.721 5.721 13 C 0.107 3.893 14 C 0.149 3.851 15 N -0.753 5.753 16 C -0.249 4.249 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.276 1.276 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.363 0.637 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 4.496 29.887 30.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 H 0.117 0.883 4 C -0.071 4.071 5 C -0.282 4.282 6 C -0.171 4.171 7 C -0.163 4.163 8 C -0.354 4.354 9 S 0.359 5.641 10 C 0.301 3.699 11 O -0.420 6.420 12 N -0.372 5.372 13 C -0.017 4.017 14 C 0.021 3.979 15 N -0.399 5.399 16 C -0.379 4.379 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.579 5.579 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.202 1.202 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.236 0.764 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.196 0.804 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.567 4.593 29.468 29.865 hybrid contribution -0.892 -1.215 0.252 1.528 sum -2.460 3.378 29.720 30.012 Atomic orbital electron populations 1.21860 0.92495 1.03023 1.03084 1.21286 0.98122 1.00885 0.92385 0.88323 1.19961 1.02278 0.97593 0.87298 1.24523 0.98665 1.02599 1.02438 1.20167 0.98152 1.02389 0.96419 1.20183 1.00060 0.97023 0.99073 1.25612 0.98709 1.06427 1.04699 1.84424 1.22527 1.34397 1.22765 1.20505 0.80177 0.84638 0.84564 1.90709 1.38026 1.26403 1.86850 1.45905 1.53540 1.32090 1.05702 1.21607 0.99611 0.96773 0.83724 1.20731 0.97225 0.95149 0.84820 1.42537 1.62274 1.33207 1.01892 1.19008 1.27045 1.10472 0.81336 0.89091 1.24683 1.00290 0.98966 0.95035 1.69705 1.49554 1.41829 0.96794 0.86535 0.80819 0.84059 0.77075 1.20914 1.21574 1.20174 0.91008 0.91777 0.91872 0.89732 0.89108 0.84222 0.84404 0.82069 0.76444 0.91373 0.91349 0.94912 0.94957 0.80384 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.78 37.16 0.33 -0.79 16 2 C -0.10 -0.96 2.71 -91.77 -0.25 -1.21 16 3 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.03 -0.30 4.53 -27.88 -0.13 -0.42 16 5 C -0.16 -1.40 5.27 -36.00 -0.19 -1.59 16 6 C -0.14 -1.08 8.60 -41.21 -0.35 -1.44 16 7 C -0.13 -0.94 10.18 -41.21 -0.42 -1.35 16 8 C -0.22 -1.55 11.23 29.04 0.33 -1.22 16 9 S 0.10 0.77 23.33 -107.50 -2.51 -1.73 16 10 C 0.52 6.67 7.15 -10.98 -0.08 6.59 16 11 O -0.54 -9.17 15.92 5.56 0.09 -9.08 16 12 N -0.72 -9.04 5.45 -60.29 -0.33 -9.37 16 13 C 0.11 1.70 5.79 -4.04 -0.02 1.67 16 14 C 0.15 2.74 6.37 -4.04 -0.03 2.71 16 15 N -0.75 -17.85 5.41 -59.90 -0.32 -18.18 16 16 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 19 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 20 Si 0.89 22.19 27.74 -169.99 -4.71 17.48 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 24 H 0.07 0.49 6.40 -51.93 -0.33 0.16 16 25 H 0.06 0.44 7.57 -51.93 -0.39 0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 31 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.40 3.94 7.89 -40.82 -0.32 3.62 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.36 8.49 5.53 -40.82 -0.23 8.26 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -33.43 332.00 -8.58 -42.01 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.50 Total: 6.39 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.07 Total: -4.14 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.12 Total: -55.93 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.43 -8.58 -42.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134554813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.387 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds