Wall clock time and date at job start Tue Mar 31 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47217 * 2 1 4 4 C 1.52995 * 109.47173 * 120.00874 * 2 1 3 5 5 C 1.50702 * 109.47096 * 294.99791 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 C 1.50704 * 109.46978 * 240.00867 * 2 1 3 11 11 O 1.21280 * 119.99913 * 240.00183 * 10 2 1 12 12 N 1.34774 * 120.00056 * 59.99606 * 10 2 1 13 13 C 1.46504 * 119.99800 * 180.02562 * 12 10 2 14 14 C 1.53004 * 109.46783 * 180.02562 * 13 12 10 15 15 N 1.46504 * 109.46783 * 180.02562 * 14 13 12 16 16 C 1.36940 * 119.99691 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99450 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99133 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00398 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46991 * 89.99928 * 20 18 16 22 22 H 1.48493 * 109.47294 * 209.99848 * 20 18 16 23 23 H 1.48504 * 109.47087 * 330.00030 * 20 18 16 24 24 H 1.08999 * 109.46903 * 299.99633 * 1 2 3 25 25 H 1.09006 * 109.47368 * 59.98797 * 1 2 3 26 26 H 1.08996 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46856 * 174.99736 * 4 2 1 28 28 H 1.08996 * 109.47050 * 54.99879 * 4 2 1 29 29 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 30 30 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 31 31 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 32 32 H 0.97005 * 120.00126 * 0.02562 * 12 10 2 33 33 H 1.08997 * 109.47171 * 299.99941 * 13 12 10 34 34 H 1.08999 * 109.46815 * 60.00423 * 13 12 10 35 35 H 1.08997 * 109.46922 * 299.99731 * 14 13 12 36 36 H 1.08996 * 109.47318 * 59.99889 * 14 13 12 37 37 H 0.96992 * 119.99992 * 0.02562 * 15 14 13 38 38 H 0.97001 * 119.99106 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0567 2.4766 6 6 0.5067 -0.1097 3.1576 7 6 0.3578 0.7210 4.2549 8 6 1.3693 1.5656 4.4618 9 16 2.6015 1.3229 3.2305 10 6 2.0323 -0.7102 -1.2306 11 8 2.7295 -1.6964 -1.1195 12 7 1.7066 -0.2497 -2.4546 13 6 2.1945 -0.9405 -3.6509 14 6 1.6850 -0.2186 -4.9000 15 7 2.1724 -0.9098 -6.0963 16 6 1.8414 -0.4418 -7.3400 17 1 1.2207 0.4364 -7.4390 18 6 2.3028 -1.0971 -8.4735 19 7 1.9850 -0.6470 -9.6688 20 14 3.3745 -2.6174 -8.3023 21 1 2.5141 -3.8269 -8.2565 22 1 4.2943 -2.7081 -9.4646 23 1 4.1670 -2.5259 -7.0498 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1263 -0.7996 1.2053 28 1 1.6054 -1.7199 1.2948 29 1 -0.2396 -0.8371 2.8742 30 1 -0.5135 0.6907 4.8925 31 1 1.4241 2.2867 5.2640 32 1 1.1492 0.5392 -2.5435 33 1 3.2845 -0.9409 -3.6511 34 1 1.8307 -1.9680 -3.6508 35 1 0.5951 -0.2179 -4.9000 36 1 2.0491 0.8088 -4.8999 37 1 2.7289 -1.6992 -6.0074 38 1 2.3071 -1.1051 -10.4609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134554813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:52 Heat of formation + Delta-G solvation = -25.208896 kcal Electronic energy + Delta-G solvation = -18885.254784 eV Core-core repulsion = 15853.414212 eV Total energy + Delta-G solvation = -3031.840573 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07590 -38.90718 -37.50333 -35.73397 -35.54216 -33.45737 -31.13292 -29.56772 -27.67744 -25.75783 -24.58974 -23.39329 -22.95145 -20.93163 -20.12057 -19.82700 -18.38027 -17.54603 -17.17591 -16.81519 -16.41474 -16.31524 -15.69395 -15.64444 -15.15829 -14.70387 -14.62307 -14.31151 -13.69767 -13.52328 -13.47289 -13.31997 -13.17936 -12.89602 -12.85151 -12.69103 -12.61188 -12.14910 -12.08378 -11.99539 -11.83518 -11.57227 -11.04307 -10.86559 -10.15473 -9.52517 -9.37212 -9.37109 -8.05933 -5.41279 0.10888 0.74709 1.14970 1.38735 1.40440 1.47722 1.59206 1.85891 2.11982 2.46158 3.25789 3.50713 3.78547 3.81287 3.93791 3.96070 4.15796 4.19407 4.30274 4.38698 4.54065 4.56422 4.71349 4.80656 4.85955 4.94778 5.01384 5.08654 5.10582 5.25973 5.30955 5.37139 5.44103 5.64393 5.71805 6.17126 6.51045 7.02486 7.20019 7.77089 7.94637 9.14813 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046862 B = 0.002544 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.353217 B =11005.192202 C =11154.574250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.114 0.886 4 C -0.027 4.027 5 C -0.179 4.179 6 C -0.138 4.138 7 C -0.140 4.140 8 C -0.215 4.215 9 S 0.073 5.927 10 C 0.515 3.485 11 O -0.584 6.584 12 N -0.711 5.711 13 C 0.122 3.878 14 C 0.150 3.850 15 N -0.759 5.759 16 C -0.238 4.238 17 H 0.064 0.936 18 C -0.061 4.061 19 N -0.980 5.980 20 Si 0.953 3.047 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.254 1.254 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.417 0.583 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.366 0.634 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 4.556 32.229 32.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.132 0.868 4 C -0.066 4.066 5 C -0.296 4.296 6 C -0.168 4.168 7 C -0.170 4.170 8 C -0.350 4.350 9 S 0.336 5.664 10 C 0.303 3.697 11 O -0.464 6.464 12 N -0.364 5.364 13 C -0.003 4.003 14 C 0.024 3.976 15 N -0.406 5.406 16 C -0.368 4.368 17 H 0.082 0.918 18 C -0.253 4.253 19 N -0.630 5.630 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.179 1.179 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.169 0.831 30 H 0.177 0.823 31 H 0.199 0.801 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.199 0.801 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.098 4.686 31.869 32.280 hybrid contribution -0.807 -1.142 -0.386 1.451 sum -2.906 3.544 31.484 31.816 Atomic orbital electron populations 1.21859 0.90826 1.03140 1.04205 1.21266 0.99283 1.00871 0.90143 0.86834 1.19833 1.01174 0.97593 0.88044 1.24398 0.99302 1.03250 1.02621 1.20401 0.97909 1.02287 0.96220 1.20452 1.00801 0.96662 0.99109 1.25915 0.97925 1.06652 1.04553 1.84503 1.23491 1.34661 1.23756 1.21168 0.79180 0.84063 0.85326 1.90694 1.39922 1.28411 1.87414 1.45761 1.53516 1.32355 1.04723 1.21227 0.98902 0.96330 0.83859 1.20837 0.97601 0.95217 0.83992 1.42564 1.62441 1.33638 1.01933 1.19009 1.25434 1.09123 0.83262 0.91829 1.25502 1.02476 1.02620 0.94696 1.69873 1.51609 1.43785 0.97694 0.85440 0.79014 0.79929 0.77613 1.20326 1.22024 1.17898 0.89825 0.90712 0.92269 0.91415 0.89745 0.83074 0.82290 0.80079 0.74615 0.92342 0.92078 0.93965 0.94185 0.80054 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.78 71.98 0.63 -1.18 16 2 C -0.09 -1.57 2.71 -11.54 -0.03 -1.60 16 3 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.03 -0.48 4.53 29.85 0.14 -0.35 16 5 C -0.18 -2.79 5.27 24.59 0.13 -2.66 16 6 C -0.14 -1.82 8.60 21.22 0.18 -1.63 16 7 C -0.14 -1.60 10.18 21.22 0.22 -1.39 16 8 C -0.22 -2.54 11.23 66.72 0.75 -1.79 16 9 S 0.07 1.09 23.33 -56.49 -1.32 -0.23 16 10 C 0.52 12.70 7.15 87.66 0.63 13.32 16 11 O -0.58 -19.54 15.92 -3.03 -0.05 -19.59 16 12 N -0.71 -16.54 5.45 -463.05 -2.52 -19.06 16 13 C 0.12 3.69 5.79 86.38 0.50 4.19 16 14 C 0.15 5.30 6.37 86.38 0.55 5.85 16 15 N -0.76 -35.12 5.41 -343.44 -1.86 -36.98 16 16 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 17 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 18 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 19 N -0.98 -62.40 13.97 21.65 0.30 -62.10 16 20 Si 0.95 45.65 27.74 68.60 1.90 47.55 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.25 -11.14 6.52 99.48 0.65 -10.49 16 24 H 0.08 0.90 6.40 -2.39 -0.02 0.88 16 25 H 0.07 0.80 7.57 -2.38 -0.02 0.78 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 1.44 7.95 -2.39 -0.02 1.42 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 31 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.42 7.14 7.89 -92.70 -0.73 6.41 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.37 16.44 5.53 -92.71 -0.51 15.93 16 38 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -72.07 332.00 1.26 -70.81 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.24 Total: 22.50 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.04 Total: -2.89 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -4.08 Total: -118.14 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.32 Total: -0.23 kcal Total: -72.07 1.26 -70.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134554813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.600 kcal (2) G-P(sol) polarization free energy of solvation -72.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds