Wall clock time and date at job start Tue Mar 31 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47476 * 2 1 4 4 C 1.52992 * 109.47198 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46973 * 179.27670 * 4 3 2 6 6 C 1.46897 * 111.00127 * 287.83146 * 5 4 3 7 7 C 1.50699 * 109.47270 * 298.73487 * 6 5 4 8 8 H 1.07999 * 120.00080 * 4.70131 * 7 6 5 9 9 C 1.37880 * 119.99887 * 184.69315 * 7 6 5 10 10 N 1.31516 * 119.99930 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00061 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47420 * 89.99724 * 11 9 7 13 13 H 1.48497 * 109.46833 * 210.00009 * 11 9 7 14 14 H 1.48502 * 109.47027 * 329.99195 * 11 9 7 15 15 C 1.46907 * 110.99881 * 163.87772 * 5 4 3 16 16 C 1.50698 * 109.47051 * 190.00047 * 15 5 4 17 17 C 1.38228 * 119.60176 * 95.00206 * 16 15 5 18 18 C 1.38610 * 119.17654 * 180.02562 * 17 16 15 19 19 C 1.38779 * 118.40839 * 0.25496 * 18 17 16 20 20 Cl 1.73602 * 120.43263 * 179.72769 * 19 18 17 21 21 C 1.38307 * 119.13564 * 359.49668 * 19 18 17 22 22 N 1.31850 * 119.60487 * 275.02391 * 16 15 5 23 23 H 1.09003 * 109.47335 * 300.00628 * 1 2 3 24 24 H 1.09002 * 109.46573 * 60.00263 * 1 2 3 25 25 H 1.09003 * 109.47337 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47335 * 239.99372 * 2 1 3 27 27 H 1.09007 * 109.46996 * 119.99967 * 2 1 3 28 28 H 1.08995 * 109.47162 * 59.99098 * 3 2 1 29 29 H 1.09002 * 109.47005 * 299.99472 * 3 2 1 30 30 H 1.08999 * 109.47382 * 59.28270 * 4 3 2 31 31 H 1.09000 * 109.47321 * 299.27692 * 4 3 2 32 32 H 1.08999 * 109.46959 * 58.73705 * 6 5 4 33 33 H 1.09004 * 109.47284 * 178.73241 * 6 5 4 34 34 H 0.96998 * 119.99892 * 179.97438 * 10 9 7 35 35 H 1.08996 * 109.46922 * 70.00232 * 15 5 4 36 36 H 1.08995 * 109.47332 * 310.00229 * 15 5 4 37 37 H 1.08002 * 120.41572 * 0.04100 * 17 16 15 38 38 H 1.07999 * 120.80038 * 179.97438 * 18 17 16 39 39 H 1.08002 * 119.62692 * 180.23169 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8273 -0.0168 6 6 3.8398 3.4469 -1.3305 7 6 4.5998 2.6795 -2.3814 8 1 5.1253 1.7744 -2.1148 9 6 4.6239 3.1327 -3.6834 10 7 5.2876 2.4632 -4.6005 11 14 3.7153 4.6983 -4.1444 12 1 4.6228 5.8628 -3.9843 13 1 3.2655 4.6118 -5.5570 14 1 2.5352 4.8648 -3.2585 15 6 5.4772 2.8893 0.3638 16 6 5.8786 4.3266 0.5737 17 6 5.8514 4.8642 1.8469 18 6 6.2219 6.1873 2.0297 19 6 6.6028 6.9259 0.9183 20 17 7.0700 8.5895 1.0859 21 6 6.6100 6.3181 -0.3241 22 7 6.2510 5.0563 -0.4594 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.9337 0.9173 -0.8826 31 1 3.9329 0.9400 0.8973 32 1 2.7758 3.4301 -1.5666 33 1 4.1909 4.4786 -1.3089 34 1 5.3043 2.7818 -5.5165 35 1 6.0856 2.4542 -0.4290 36 1 5.6302 2.3308 1.2873 37 1 5.5456 4.2608 2.6888 38 1 6.2100 6.6341 3.0129 39 1 6.9087 6.8844 -1.1938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136929784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:57 Heat of formation + Delta-G solvation = 22.544912 kcal Electronic energy + Delta-G solvation = -20043.432907 eV Core-core repulsion = 17011.619388 eV Total energy + Delta-G solvation = -3031.813519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.08398 -37.32730 -36.49750 -34.32478 -32.37667 -32.23696 -31.29511 -28.58911 -27.60976 -24.99658 -23.50828 -22.95842 -21.99087 -20.63343 -19.42522 -17.04818 -16.77338 -16.34714 -15.50726 -15.26031 -14.85279 -14.36517 -14.02405 -13.69107 -13.57651 -13.32993 -12.85895 -12.46353 -12.35788 -12.30505 -11.90676 -11.73527 -11.34827 -11.23963 -11.15933 -10.84949 -10.78162 -10.52608 -10.45259 -10.22790 -10.08804 -9.73270 -9.63711 -9.44372 -9.05774 -8.63248 -8.46258 -7.23619 -6.00400 -3.96884 1.13463 1.39023 2.10508 3.35633 3.41702 3.45493 3.88177 4.49937 4.59398 4.81102 4.85499 5.04301 5.13083 5.32523 5.35859 5.47178 5.49879 5.52498 5.78728 5.80536 5.84093 6.05275 6.07514 6.11973 6.15978 6.21859 6.29936 6.43896 6.51460 6.58913 6.76595 6.80351 6.90632 7.01477 7.22437 7.63538 8.01261 8.05698 8.30018 8.52152 8.99719 9.64551 11.13027 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.005647 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.096966 B = 4956.871181 C = 6328.302763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.058 3.942 5 N -0.531 5.531 6 C 0.151 3.849 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.078 3.922 10 N -0.902 5.902 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.291 1.291 14 H -0.268 1.268 15 C 0.100 3.900 16 C 0.162 3.838 17 C -0.151 4.151 18 C -0.073 4.073 19 C -0.102 4.102 20 Cl -0.072 7.072 21 C 0.114 3.886 22 N -0.433 5.433 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 4.025 13.867 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.070 4.070 5 N -0.254 5.254 6 C 0.024 3.976 7 C -0.570 4.570 8 H 0.091 0.909 9 C -0.124 4.124 10 N -0.541 5.541 11 Si 0.702 3.298 12 H -0.201 1.201 13 H -0.217 1.217 14 H -0.193 1.193 15 C -0.028 4.028 16 C 0.024 3.976 17 C -0.171 4.171 18 C -0.099 4.099 19 C -0.131 4.131 20 Cl -0.044 7.044 21 C -0.045 4.045 22 N -0.141 5.141 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.175 4.043 13.209 13.863 hybrid contribution 0.098 1.081 -0.230 1.110 sum -1.077 5.124 12.978 13.995 Atomic orbital electron populations 1.21752 0.96449 1.00867 1.01611 1.21480 0.95273 0.97645 1.01641 1.21500 0.95552 0.95519 1.02114 1.21997 0.94785 0.89825 1.00411 1.62526 1.14040 1.17277 1.31580 1.20265 0.96481 0.95700 0.85123 1.21451 1.31978 1.10685 0.92874 0.90948 1.24822 0.94686 0.96385 0.96485 1.69918 1.42309 1.39614 1.02290 0.86878 0.80784 0.84818 0.77344 1.20076 1.21687 1.19319 1.20906 0.92011 0.89083 1.00827 1.21464 0.91312 0.96841 0.87969 1.21981 1.01230 0.94935 0.98981 1.21410 0.96588 0.93887 0.98062 1.22107 1.07143 0.86971 0.96846 1.98349 1.90839 1.17112 1.98066 1.22906 0.95144 0.91388 0.95046 1.67978 1.08367 1.04753 1.33049 0.93126 0.92788 0.93336 0.91933 0.92651 0.92470 0.91581 0.92544 0.93032 0.95715 0.94830 0.92936 0.90853 0.90946 0.84161 0.84358 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.15 0.37 -1.45 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.11 -1.78 5.28 -26.73 -0.14 -1.92 16 4 C 0.06 1.04 4.81 -3.83 -0.02 1.02 16 5 N -0.53 -10.52 4.66 -237.52 -1.11 -11.63 16 6 C 0.15 3.59 3.77 -4.98 -0.02 3.57 16 7 C -0.53 -14.49 7.89 -34.44 -0.27 -14.77 16 8 H 0.07 2.13 6.20 -52.49 -0.33 1.81 16 9 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 10 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 11 Si 0.87 22.14 27.38 -169.99 -4.65 17.49 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.27 -6.61 6.68 56.52 0.38 -6.23 16 15 C 0.10 1.84 5.09 -4.97 -0.03 1.81 16 16 C 0.16 2.87 5.70 -82.59 -0.47 2.40 16 17 C -0.15 -2.10 9.72 -39.45 -0.38 -2.49 16 18 C -0.07 -0.94 9.98 -39.24 -0.39 -1.33 16 19 C -0.10 -1.44 6.34 -39.36 -0.25 -1.69 16 20 Cl -0.07 -0.89 28.99 -51.86 -1.50 -2.39 16 21 C 0.11 1.91 10.99 -17.51 -0.19 1.72 16 22 N -0.43 -8.57 8.78 -9.45 -0.08 -8.66 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.23 6.72 -51.93 -0.35 0.88 16 30 H 0.06 1.18 6.17 -51.93 -0.32 0.86 16 31 H 0.05 0.80 7.81 -51.93 -0.41 0.40 16 32 H 0.02 0.61 6.04 -51.93 -0.31 0.30 16 33 H 0.03 0.84 5.36 -51.93 -0.28 0.56 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 1.58 6.57 -51.93 -0.34 1.24 16 36 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 37 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.16 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -30.38 329.49 -9.36 -39.74 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.70 Total: 0.12 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.05 Total: -12.82 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.42 Total: -47.10 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.65 Total: 17.49 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.38 -9.36 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136929784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.281 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds