Wall clock time and date at job start Tue Mar 31 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47476 * 2 1 4 4 C 1.52992 * 109.47198 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46973 * 179.27670 * 4 3 2 6 6 C 1.46897 * 111.00127 * 287.83146 * 5 4 3 7 7 C 1.50699 * 109.47270 * 298.73487 * 6 5 4 8 8 H 1.07999 * 120.00080 * 4.70131 * 7 6 5 9 9 C 1.37880 * 119.99887 * 184.69315 * 7 6 5 10 10 N 1.31516 * 119.99930 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00061 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47420 * 89.99724 * 11 9 7 13 13 H 1.48497 * 109.46833 * 210.00009 * 11 9 7 14 14 H 1.48502 * 109.47027 * 329.99195 * 11 9 7 15 15 C 1.46907 * 110.99881 * 163.87772 * 5 4 3 16 16 C 1.50698 * 109.47051 * 190.00047 * 15 5 4 17 17 C 1.38228 * 119.60176 * 95.00206 * 16 15 5 18 18 C 1.38610 * 119.17654 * 180.02562 * 17 16 15 19 19 C 1.38779 * 118.40839 * 0.25496 * 18 17 16 20 20 Cl 1.73602 * 120.43263 * 179.72769 * 19 18 17 21 21 C 1.38307 * 119.13564 * 359.49668 * 19 18 17 22 22 N 1.31850 * 119.60487 * 275.02391 * 16 15 5 23 23 H 1.09003 * 109.47335 * 300.00628 * 1 2 3 24 24 H 1.09002 * 109.46573 * 60.00263 * 1 2 3 25 25 H 1.09003 * 109.47337 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47335 * 239.99372 * 2 1 3 27 27 H 1.09007 * 109.46996 * 119.99967 * 2 1 3 28 28 H 1.08995 * 109.47162 * 59.99098 * 3 2 1 29 29 H 1.09002 * 109.47005 * 299.99472 * 3 2 1 30 30 H 1.08999 * 109.47382 * 59.28270 * 4 3 2 31 31 H 1.09000 * 109.47321 * 299.27692 * 4 3 2 32 32 H 1.08999 * 109.46959 * 58.73705 * 6 5 4 33 33 H 1.09004 * 109.47284 * 178.73241 * 6 5 4 34 34 H 0.96998 * 119.99892 * 179.97438 * 10 9 7 35 35 H 1.08996 * 109.46922 * 70.00232 * 15 5 4 36 36 H 1.08995 * 109.47332 * 310.00229 * 15 5 4 37 37 H 1.08002 * 120.41572 * 0.04100 * 17 16 15 38 38 H 1.07999 * 120.80038 * 179.97438 * 18 17 16 39 39 H 1.08002 * 119.62692 * 180.23169 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8273 -0.0168 6 6 3.8398 3.4469 -1.3305 7 6 4.5998 2.6795 -2.3814 8 1 5.1253 1.7744 -2.1148 9 6 4.6239 3.1327 -3.6834 10 7 5.2876 2.4632 -4.6005 11 14 3.7153 4.6983 -4.1444 12 1 4.6228 5.8628 -3.9843 13 1 3.2655 4.6118 -5.5570 14 1 2.5352 4.8648 -3.2585 15 6 5.4772 2.8893 0.3638 16 6 5.8786 4.3266 0.5737 17 6 5.8514 4.8642 1.8469 18 6 6.2219 6.1873 2.0297 19 6 6.6028 6.9259 0.9183 20 17 7.0700 8.5895 1.0859 21 6 6.6100 6.3181 -0.3241 22 7 6.2510 5.0563 -0.4594 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.9337 0.9173 -0.8826 31 1 3.9329 0.9400 0.8973 32 1 2.7758 3.4301 -1.5666 33 1 4.1909 4.4786 -1.3089 34 1 5.3043 2.7818 -5.5165 35 1 6.0856 2.4542 -0.4290 36 1 5.6302 2.3308 1.2873 37 1 5.5456 4.2608 2.6888 38 1 6.2100 6.6341 3.0129 39 1 6.9087 6.8844 -1.1938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136929784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:56 Heat of formation + Delta-G solvation = 3.551765 kcal Electronic energy + Delta-G solvation = -20044.256511 eV Core-core repulsion = 17011.619388 eV Total energy + Delta-G solvation = -3032.637123 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.31479 -38.85202 -37.58712 -35.60533 -34.46981 -33.40167 -32.61504 -30.18400 -29.18275 -26.47140 -24.81002 -24.56539 -23.21463 -21.86875 -21.14429 -19.04025 -17.96457 -17.61708 -16.90090 -16.69551 -16.25971 -16.18389 -15.62022 -14.95501 -14.87952 -14.46287 -14.41327 -13.97576 -13.74885 -13.63494 -13.20989 -13.07603 -12.91627 -12.86078 -12.54250 -12.32478 -12.22056 -12.06353 -11.88460 -11.75605 -11.60589 -11.52685 -11.24139 -10.79907 -10.68049 -10.30256 -9.81999 -8.96468 -8.25336 -6.23853 -0.05172 0.27732 1.01827 1.30743 1.32808 1.41487 2.35713 2.63694 3.12868 3.30608 3.56497 3.75873 3.80396 4.01848 4.12866 4.24581 4.32226 4.38017 4.55007 4.56621 4.72806 4.81462 4.89241 4.92135 4.98036 5.01747 5.07108 5.10030 5.19355 5.21270 5.23590 5.38881 5.46806 5.57138 5.60017 5.63437 6.11474 6.36350 6.43433 6.77995 7.07821 7.40349 8.91495 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.005647 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.096966 B = 4956.871181 C = 6328.302763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.102 4.102 4 C 0.058 3.942 5 N -0.521 5.521 6 C 0.165 3.835 7 C -0.514 4.514 8 H 0.038 0.962 9 C 0.019 3.981 10 N -0.950 5.950 11 Si 0.932 3.068 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.255 1.255 15 C 0.103 3.897 16 C 0.132 3.868 17 C -0.134 4.134 18 C -0.062 4.062 19 C -0.095 4.095 20 Cl -0.052 7.052 21 C 0.092 3.908 22 N -0.487 5.487 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.017 0.983 31 H 0.085 0.915 32 H 0.018 0.982 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.113 0.887 37 H 0.176 0.824 38 H 0.179 0.821 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 5.265 17.234 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.140 4.140 4 C -0.070 4.070 5 N -0.244 5.244 6 C 0.038 3.962 7 C -0.553 4.553 8 H 0.056 0.944 9 C -0.178 4.178 10 N -0.591 5.591 11 Si 0.757 3.243 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.179 1.179 15 C -0.025 4.025 16 C -0.005 4.005 17 C -0.154 4.154 18 C -0.088 4.088 19 C -0.124 4.124 20 Cl -0.024 7.024 21 C -0.067 4.067 22 N -0.196 5.196 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.131 0.869 37 H 0.194 0.806 38 H 0.196 0.804 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.322 5.287 16.598 17.574 hybrid contribution 0.546 0.684 -1.171 1.462 sum -1.776 5.971 15.428 16.638 Atomic orbital electron populations 1.21731 0.94905 1.02030 1.01738 1.21455 0.96616 0.95824 1.01805 1.21454 0.94073 0.97151 1.01364 1.22084 0.96100 0.88662 1.00128 1.62536 1.15349 1.18016 1.28510 1.19968 0.95049 0.95102 0.86124 1.21655 1.30641 1.09339 0.93712 0.94430 1.25615 0.95898 0.99577 0.96698 1.70056 1.44690 1.41686 1.02707 0.85942 0.80002 0.81030 0.77313 1.19772 1.21223 1.17924 1.20959 0.89977 0.90631 1.00970 1.21455 0.93299 0.96381 0.89377 1.22242 0.99413 0.95624 0.98130 1.21846 0.94585 0.93223 0.99154 1.22137 1.05961 0.87931 0.96405 1.98359 1.90580 1.15504 1.97942 1.22923 0.96383 0.90902 0.96443 1.67794 1.10175 1.06414 1.35224 0.91766 0.93903 0.91697 0.93739 0.90522 0.90754 0.94600 0.96498 0.89688 0.96433 0.95424 0.92997 0.95366 0.86938 0.80618 0.80415 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.91 71.98 0.71 -2.57 16 2 C -0.12 -3.13 5.93 30.59 0.18 -2.95 16 3 C -0.10 -3.25 5.28 30.59 0.16 -3.09 16 4 C 0.06 2.08 4.81 86.30 0.41 2.49 16 5 N -0.52 -20.49 4.66 -905.37 -4.22 -24.71 16 6 C 0.17 8.01 3.77 85.56 0.32 8.33 16 7 C -0.51 -29.42 7.89 25.60 0.20 -29.22 16 8 H 0.04 2.37 6.20 -2.91 -0.02 2.35 16 9 C 0.02 1.15 5.47 84.66 0.46 1.61 16 10 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 11 Si 0.93 46.83 27.38 68.60 1.88 48.70 16 12 H -0.27 -13.46 7.11 99.48 0.71 -12.76 16 13 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 14 H -0.26 -12.16 6.68 99.48 0.66 -11.49 16 15 C 0.10 3.74 5.09 85.55 0.44 4.18 16 16 C 0.13 4.57 5.70 42.55 0.24 4.81 16 17 C -0.13 -3.28 9.72 22.36 0.22 -3.06 16 18 C -0.06 -1.35 9.98 22.49 0.22 -1.13 16 19 C -0.10 -2.49 6.34 22.42 0.14 -2.35 16 20 Cl -0.05 -1.16 28.99 -2.72 -0.08 -1.24 16 21 C 0.09 3.06 10.99 84.70 0.93 3.99 16 22 N -0.49 -19.53 8.78 -183.80 -1.61 -21.14 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.34 6.72 -2.39 -0.02 1.32 16 30 H 0.02 0.73 6.17 -2.39 -0.01 0.72 16 31 H 0.08 2.46 7.81 -2.39 -0.02 2.45 16 32 H 0.02 0.88 6.04 -2.39 -0.01 0.87 16 33 H 0.03 1.40 5.36 -2.38 -0.01 1.39 16 34 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.03 1.28 6.57 -2.39 -0.02 1.26 16 36 H 0.11 3.09 7.76 -2.39 -0.02 3.07 16 37 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.16 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -69.95 329.49 1.91 -68.04 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.99 Total: 9.75 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 4.65 Total: -18.95 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -5.53 Total: -106.30 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.88 Total: 48.70 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -69.95 1.91 -68.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136929784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.587 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds